RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 FAM161AQ3B820 660 aa16.73■□□□□ 0.27
CCDC88A-214ENST00000621814 RUNDC1Q96C34 613 aa16.73■□□□□ 0.27
CCDC88A-214ENST00000621814 CGNL1Q0VF96 1302 aa16.73■□□□□ 0.27
CCDC88A-214ENST00000621814 KIF1BO60333 1816 aa16.72■□□□□ 0.27
CCDC88A-214ENST00000621814 U2SURPO15042 1029 aaKnown RBP16.72■□□□□ 0.27
CCDC88A-214ENST00000621814 TNNQ9UQP3 1299 aa16.72■□□□□ 0.27
CCDC88A-214ENST00000621814 MROH2AA6NES4 1674 aa16.72■□□□□ 0.27
CCDC88A-214ENST00000621814 KIDINS220Q9ULH0 1771 aa16.72■□□□□ 0.27
CCDC88A-214ENST00000621814 CFAP53Q96M91 514 aa16.72■□□□□ 0.27
CCDC88A-214ENST00000621814 VGFO15240 615 aaPredicted RBP16.71■□□□□ 0.26
CCDC88A-214ENST00000621814 IDI1Q13907 227 aa16.71■□□□□ 0.26
CCDC88A-214ENST00000621814 C8orf34Q49A92 452 aa16.71■□□□□ 0.26
CCDC88A-214ENST00000621814 DDRGK1Q96HY6 314 aa16.71■□□□□ 0.26
CCDC88A-214ENST00000621814 EVC2Q86UK5 1308 aa16.7■□□□□ 0.26
CCDC88A-214ENST00000621814 GGNBP2Q9H3C7 697 aa16.7■□□□□ 0.26
CCDC88A-214ENST00000621814 POLR3AO14802 1390 aaPredicted RBP16.69■□□□□ 0.26
CCDC88A-214ENST00000621814 MINK1Q8N4C8 1332 aaPredicted RBP16.69■□□□□ 0.26
CCDC88A-214ENST00000621814 POGZQ7Z3K3 1410 aa16.67■□□□□ 0.26
CCDC88A-214ENST00000621814 POGKQ9P215 609 aa16.66■□□□□ 0.26
CCDC88A-214ENST00000621814 RARSP54136 660 aaKnown RBP16.66■□□□□ 0.26
CCDC88A-214ENST00000621814 STAG3Q9UJ98 1225 aa16.66■□□□□ 0.26
CCDC88A-214ENST00000621814 KIAA1210Q9ULL0 1709 aa16.66■□□□□ 0.26
CCDC88A-214ENST00000621814 PPM1GO15355 546 aaPredicted RBP16.66■□□□□ 0.26
CCDC88A-214ENST00000621814 TSR2Q969E8 191 aaKnown RBP16.66■□□□□ 0.26
CCDC88A-214ENST00000621814 RLBP1P12271 317 aa16.65■□□□□ 0.26
CCDC88A-214ENST00000621814 SBNO2Q9Y2G9 1366 aa16.65■□□□□ 0.26
CCDC88A-214ENST00000621814 RPGRIP1LQ68CZ1 1315 aa16.65■□□□□ 0.26
CCDC88A-214ENST00000621814 PDE3AQ14432 1141 aa16.64■□□□□ 0.25
CCDC88A-214ENST00000621814 ADGRB3O60242 1522 aa16.64■□□□□ 0.25
CCDC88A-214ENST00000621814 NRXN1Q9ULB1 1477 aa16.64■□□□□ 0.25
CCDC88A-214ENST00000621814 FBXO31Q5XUX0 539 aaPredicted RBP16.64■□□□□ 0.25
CCDC88A-214ENST00000621814 PRAM1Q96QH2 718 aa16.64■□□□□ 0.25
CCDC88A-214ENST00000621814 NGEFQ8N5V2 710 aa16.62■□□□□ 0.25
CCDC88A-214ENST00000621814 FBLN1P23142 703 aa16.62■□□□□ 0.25
CCDC88A-214ENST00000621814 PCDHB15Q9Y5E8 787 aa16.61■□□□□ 0.25
CCDC88A-214ENST00000621814 SEC24BO95487 1268 aa16.61■□□□□ 0.25
CCDC88A-214ENST00000621814 FRMPD1Q5SYB0 1578 aa16.6■□□□□ 0.25
CCDC88A-214ENST00000621814 CYB5RLQ6IPT4 315 aa16.6■□□□□ 0.25
CCDC88A-214ENST00000621814 LMTK2Q8IWU2 1503 aa16.6■□□□□ 0.25
CCDC88A-214ENST00000621814 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.6■□□□□ 0.25
CCDC88A-214ENST00000621814 MLECQ14165 292 aa16.59■□□□□ 0.25
CCDC88A-214ENST00000621814 WDR63Q8IWG1 891 aa16.59■□□□□ 0.25
CCDC88A-214ENST00000621814 FTSJ3Q8IY81 847 aaKnown RBP16.59■□□□□ 0.25
CCDC88A-214ENST00000621814 ADGRB1O14514 1584 aa16.59■□□□□ 0.25
CCDC88A-214ENST00000621814 MLH3Q9UHC1 1453 aa16.59■□□□□ 0.25
CCDC88A-214ENST00000621814 MYH16Q9H6N6 1097 aa16.59■□□□□ 0.25
CCDC88A-214ENST00000621814 QRICH2Q9H0J4 1663 aa16.59■□□□□ 0.25
CCDC88A-214ENST00000621814 ABCC3O15438 1527 aa16.58■□□□□ 0.25
CCDC88A-214ENST00000621814 ANKRD36BQ8N2N9 1353 aa16.58■□□□□ 0.25
CCDC88A-214ENST00000621814 NFKBIBQ15653 356 aa16.58■□□□□ 0.24
CCDC88A-214ENST00000621814 MAPK8IP3Q9UPT6 1336 aa16.58■□□□□ 0.24
CCDC88A-214ENST00000621814 IFT172Q9UG01 1749 aa16.58■□□□□ 0.24
CCDC88A-214ENST00000621814 A0A1W2PP64 1363 aa16.57■□□□□ 0.24
CCDC88A-214ENST00000621814 NEURL4Q96JN8 1562 aa16.57■□□□□ 0.24
CCDC88A-214ENST00000621814 EXOSC9Q06265 439 aaKnown RBP16.57■□□□□ 0.24
CCDC88A-214ENST00000621814 SMC4Q9NTJ3 1288 aa16.57■□□□□ 0.24
CCDC88A-214ENST00000621814 CABP1Q9NZU7 370 aa16.56■□□□□ 0.24
CCDC88A-214ENST00000621814 HECW2Q9P2P5 1572 aa16.56■□□□□ 0.24
CCDC88A-214ENST00000621814 SETBP1Q9Y6X0 1596 aa16.56■□□□□ 0.24
CCDC88A-214ENST00000621814 YEATS2Q9ULM3 1422 aa16.56■□□□□ 0.24
CCDC88A-214ENST00000621814 FYB1O15117 783 aa16.55■□□□□ 0.24
CCDC88A-214ENST00000621814 TERF2IPQ9NYB0 399 aa16.55■□□□□ 0.24
CCDC88A-214ENST00000621814 SLC52A1Q9NWF4 448 aa16.54■□□□□ 0.24
CCDC88A-214ENST00000621814 RIPK4P57078 832 aa16.54■□□□□ 0.24
CCDC88A-214ENST00000621814 WAPLQ7Z5K2 1190 aa16.54■□□□□ 0.24
CCDC88A-214ENST00000621814 PMFBP1Q8TBY8 1022 aa16.54■□□□□ 0.24
CCDC88A-214ENST00000621814 CDK19Q9BWU1 502 aa16.54■□□□□ 0.24
CCDC88A-214ENST00000621814 USP35Q9P2H5 1018 aa16.54■□□□□ 0.24
CCDC88A-214ENST00000621814 PDZRN3Q9UPQ7 1066 aa16.54■□□□□ 0.24
CCDC88A-214ENST00000621814 PPLO60437 1756 aa16.54■□□□□ 0.24
CCDC88A-214ENST00000621814 TMPOP42166 694 aaKnown RBP16.54■□□□□ 0.24
CCDC88A-214ENST00000621814 GLI2P10070 1586 aa16.53■□□□□ 0.24
CCDC88A-214ENST00000621814 TULP4Q9NRJ4 1543 aa16.53■□□□□ 0.24
CCDC88A-214ENST00000621814 ITPRIPQ8IWB1 547 aa16.53■□□□□ 0.24
CCDC88A-214ENST00000621814 PHF23Q9BUL5 403 aaPredicted RBP16.53■□□□□ 0.24
CCDC88A-214ENST00000621814 RTN4Q9NQC3 1192 aaKnown RBP16.53■□□□□ 0.24
CCDC88A-214ENST00000621814 MYO3AQ8NEV4 1616 aa16.53■□□□□ 0.24
CCDC88A-214ENST00000621814 ZKSCAN2Q63HK3 967 aa16.53■□□□□ 0.24
CCDC88A-214ENST00000621814 DZIP1LQ8IYY4 767 aaKnown RBP16.52■□□□□ 0.24
CCDC88A-214ENST00000621814 HDGFL2Q7Z4V5 671 aaPredicted RBP16.51■□□□□ 0.23
CCDC88A-214ENST00000621814 SLKQ9H2G2 1235 aaPredicted RBP16.51■□□□□ 0.23
CCDC88A-214ENST00000621814 RWDD1Q9H446 243 aaPredicted RBP16.51■□□□□ 0.23
CCDC88A-214ENST00000621814 FRAT2O75474 233 aaPredicted RBP16.51■□□□□ 0.23
CCDC88A-214ENST00000621814 CCDC27Q2M243 656 aa16.51■□□□□ 0.23
CCDC88A-214ENST00000621814 SSH1Q8WYL5 1049 aa16.51■□□□□ 0.23
CCDC88A-214ENST00000621814 SHPRHQ149N8 1683 aa16.5■□□□□ 0.23
CCDC88A-214ENST00000621814 DIAPH1O60610 1272 aaKnown RBP16.5■□□□□ 0.23
CCDC88A-214ENST00000621814 MVPQ14764 893 aaKnown RBP16.5■□□□□ 0.23
CCDC88A-214ENST00000621814 TRIM35Q9UPQ4 493 aa16.5■□□□□ 0.23
CCDC88A-214ENST00000621814 SIGLEC1Q9BZZ2 1709 aa16.5■□□□□ 0.23
CCDC88A-214ENST00000621814 HMOX1P09601 288 aa16.5■□□□□ 0.23
CCDC88A-214ENST00000621814 SPRYD3Q8NCJ5 442 aa16.5■□□□□ 0.23
CCDC88A-214ENST00000621814 FAM69CQ0P6D2 419 aa16.49■□□□□ 0.23
CCDC88A-214ENST00000621814 NOB1Q9ULX3 412 aaKnown RBP16.49■□□□□ 0.23
CCDC88A-214ENST00000621814 NINLQ9Y2I6 1382 aa16.49■□□□□ 0.23
CCDC88A-214ENST00000621814 IL27Q8NEV9 243 aa16.49■□□□□ 0.23
CCDC88A-214ENST00000621814 PLEKHF1Q96S99 279 aa16.49■□□□□ 0.23
CCDC88A-214ENST00000621814 TRIM27P14373 513 aa16.49■□□□□ 0.23
CCDC88A-214ENST00000621814 CAMSAP1Q5T5Y3 1602 aa16.48■□□□□ 0.23
CCDC88A-214ENST00000621814 NEXMIFQ5QGS0 1516 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms