RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 GFRA3O60609 400 aa12.38□□□□□ -0.43
VPS29-212ENST00000621131 PCDHGC3Q9UN70 934 aa12.38□□□□□ -0.43
VPS29-212ENST00000621131 MMP16P51512 607 aa12.37□□□□□ -0.43
VPS29-212ENST00000621131 SYMPKQ92797 1274 aaKnown RBP12.37□□□□□ -0.43
VPS29-212ENST00000621131 FCF1Q9Y324 198 aaKnown RBP12.37□□□□□ -0.43
VPS29-212ENST00000621131 MOXD2PA6NHM9 499 aa12.36□□□□□ -0.43
VPS29-212ENST00000621131 FDX1P10109 184 aa12.36□□□□□ -0.43
VPS29-212ENST00000621131 NDUFV2P19404 249 aa12.36□□□□□ -0.43
VPS29-212ENST00000621131 ZNF598Q86UK7 904 aaKnown RBP12.36□□□□□ -0.43
VPS29-212ENST00000621131 LAPTM4AQ15012 233 aa12.35□□□□□ -0.43
VPS29-212ENST00000621131 TBC1D2Q9BYX2 928 aa12.34□□□□□ -0.43
VPS29-212ENST00000621131 DXOO77932 396 aaKnown RBP12.33□□□□□ -0.44
VPS29-212ENST00000621131 TRIM67Q6ZTA4 783 aa12.33□□□□□ -0.44
VPS29-212ENST00000621131 RPIAP49247 311 aa12.32□□□□□ -0.44
VPS29-212ENST00000621131 NRG2O14511 850 aaPredicted RBP12.31□□□□□ -0.44
VPS29-212ENST00000621131 PDZRN3Q9UPQ7 1066 aa12.31□□□□□ -0.44
VPS29-212ENST00000621131 DIXDC1Q155Q3 683 aa12.3□□□□□ -0.44
VPS29-212ENST00000621131 ZNF697Q5TEC3 545 aa12.3□□□□□ -0.44
VPS29-212ENST00000621131 RETREG3Q86VR2 466 aa12.3□□□□□ -0.44
VPS29-212ENST00000621131 GJA5P36382 358 aa12.29□□□□□ -0.44
VPS29-212ENST00000621131 C6orf229H3BNL8 230 aa12.27□□□□□ -0.45
VPS29-212ENST00000621131 GDF9O60383 454 aa12.27□□□□□ -0.45
VPS29-212ENST00000621131 RSBN1LQ6PCB5 846 aaPredicted RBP12.27□□□□□ -0.45
VPS29-212ENST00000621131 Q6ZNB5 142 aa12.27□□□□□ -0.45
VPS29-212ENST00000621131 SPTLC1O15269 473 aa12.26□□□□□ -0.45
VPS29-212ENST00000621131 CD2BP2O95400 341 aaKnown RBP12.26□□□□□ -0.45
VPS29-212ENST00000621131 JUNDP17535 347 aa12.26□□□□□ -0.45
VPS29-212ENST00000621131 PCDHB15Q9Y5E8 787 aa12.26□□□□□ -0.45
VPS29-212ENST00000621131 PRR20EP86478 221 aa12.25□□□□□ -0.45
VPS29-212ENST00000621131 PRR20CP86479 221 aa12.25□□□□□ -0.45
VPS29-212ENST00000621131 PRR20DP86480 221 aa12.25□□□□□ -0.45
VPS29-212ENST00000621131 PRR20BP86481 221 aa12.25□□□□□ -0.45
VPS29-212ENST00000621131 PRR20AP86496 221 aa12.25□□□□□ -0.45
VPS29-212ENST00000621131 LCE2BO14633 110 aa12.23□□□□□ -0.45
VPS29-212ENST00000621131 ZBTB24O43167 697 aaPredicted RBP12.23□□□□□ -0.45
VPS29-212ENST00000621131 RIC3Q7Z5B4 369 aa12.23□□□□□ -0.45
VPS29-212ENST00000621131 PKD2L1Q9P0L9 805 aa12.23□□□□□ -0.45
VPS29-212ENST00000621131 MTMR2Q13614 643 aa12.22□□□□□ -0.45
VPS29-212ENST00000621131 MYSM1Q5VVJ2 828 aa12.22□□□□□ -0.45
VPS29-212ENST00000621131 SPDYE5A6NIY4 337 aa12.21□□□□□ -0.45
VPS29-212ENST00000621131 CCDC24Q8N4L8 307 aa12.21□□□□□ -0.45
VPS29-212ENST00000621131 PRR7Q8TB68 274 aa12.21□□□□□ -0.45
VPS29-212ENST00000621131 TNFRSF10AO00220 468 aa12.19□□□□□ -0.46
VPS29-212ENST00000621131 TRAF7Q6Q0C0 670 aa12.19□□□□□ -0.46
VPS29-212ENST00000621131 GPBP1L1Q9HC44 474 aaPredicted RBP12.19□□□□□ -0.46
VPS29-212ENST00000621131 HRCP23327 699 aa12.18□□□□□ -0.46
VPS29-212ENST00000621131 FOXC1Q12948 553 aa12.18□□□□□ -0.46
VPS29-212ENST00000621131 NUDT12Q9BQG2 462 aa12.18□□□□□ -0.46
VPS29-212ENST00000621131 KDM4CQ9H3R0 1056 aa12.18□□□□□ -0.46
VPS29-212ENST00000621131 LIMD1Q9UGP4 676 aa12.18□□□□□ -0.46
VPS29-212ENST00000621131 TRIM32Q13049 653 aa12.17□□□□□ -0.46
VPS29-212ENST00000621131 TUSC1Q2TAM9 212 aa12.17□□□□□ -0.46
VPS29-212ENST00000621131 PRPF38BQ5VTL8 546 aaKnown RBP12.17□□□□□ -0.46
VPS29-212ENST00000621131 DESI1Q6ICB0 168 aa12.17□□□□□ -0.46
VPS29-212ENST00000621131 PTCRAQ6ISU1 281 aaPredicted RBP12.17□□□□□ -0.46
VPS29-212ENST00000621131 CABLES1Q8TDN4 633 aa12.15□□□□□ -0.46
VPS29-212ENST00000621131 ZBTB3Q9H5J0 574 aa12.15□□□□□ -0.46
VPS29-212ENST00000621131 CFAP99D6REC4 459 aa12.14□□□□□ -0.47
VPS29-212ENST00000621131 PTPRNQ16849 979 aa12.14□□□□□ -0.47
VPS29-212ENST00000621131 RSPH6AQ9H0K4 717 aa12.14□□□□□ -0.47
VPS29-212ENST00000621131 EVA1BQ9NVM1 165 aa12.14□□□□□ -0.47
VPS29-212ENST00000621131 DGAT1O75907 488 aa12.13□□□□□ -0.47
VPS29-212ENST00000621131 CCNYL3P0C7X3 344 aa12.13□□□□□ -0.47
VPS29-212ENST00000621131 CSPP1Q1MSJ5 1256 aa12.13□□□□□ -0.47
VPS29-212ENST00000621131 FAM117AQ9C073 453 aa12.13□□□□□ -0.47
VPS29-212ENST00000621131 TOR4AQ9NXH8 423 aa12.13□□□□□ -0.47
VPS29-212ENST00000621131 LILRB3O75022 631 aa12.12□□□□□ -0.47
VPS29-212ENST00000621131 SKOR1P84550 965 aa12.12□□□□□ -0.47
VPS29-212ENST00000621131 QPCTQ16769 361 aa12.12□□□□□ -0.47
VPS29-212ENST00000621131 WNT7AO00755 349 aa12.11□□□□□ -0.47
VPS29-212ENST00000621131 LYPD8Q6UX82 237 aa12.11□□□□□ -0.47
VPS29-212ENST00000621131 CLK2P49760 499 aaKnown RBP12.1□□□□□ -0.47
VPS29-212ENST00000621131 POLR3EQ9NVU0 708 aa12.1□□□□□ -0.47
VPS29-212ENST00000621131 KCNH2Q12809 1159 aa12.09□□□□□ -0.47
VPS29-212ENST00000621131 PKDCCQ504Y2 493 aa12.09□□□□□ -0.47
VPS29-212ENST00000621131 WNT7BP56706 349 aa12.08□□□□□ -0.48
VPS29-212ENST00000621131 DDRGK1Q96HY6 314 aa12.08□□□□□ -0.48
VPS29-212ENST00000621131 PLEKHG3A1L390 1219 aa12.07□□□□□ -0.48
VPS29-212ENST00000621131 FAM187AA6NFU0 413 aa12.07□□□□□ -0.48
VPS29-212ENST00000621131 NUTM2BA6NNL0 878 aaPredicted RBP12.07□□□□□ -0.48
VPS29-212ENST00000621131 NUTM2EB1AL46 878 aaPredicted RBP12.07□□□□□ -0.48
VPS29-212ENST00000621131 MYT1Q01538 1121 aa12.07□□□□□ -0.48
VPS29-212ENST00000621131 RTL5Q5HYW3 569 aaPredicted RBP12.07□□□□□ -0.48
VPS29-212ENST00000621131 RC3H1Q5TC82 1133 aaKnown RBP12.07□□□□□ -0.48
VPS29-212ENST00000621131 NUTM2DQ5VT03 806 aaPredicted RBP12.07□□□□□ -0.48
VPS29-212ENST00000621131 NUTM2AQ8IVF1 878 aaPredicted RBP12.07□□□□□ -0.48
VPS29-212ENST00000621131 CYP4X1Q8N118 509 aa12.07□□□□□ -0.48
VPS29-212ENST00000621131 SKIV2LQ15477 1246 aaKnown RBP12.06□□□□□ -0.48
VPS29-212ENST00000621131 MRGPRX2Q96LB1 330 aa12.06□□□□□ -0.48
VPS29-212ENST00000621131 UNC93B1Q9H1C4 597 aa12.06□□□□□ -0.48
VPS29-212ENST00000621131 SH3D19Q5HYK7 790 aa12.04□□□□□ -0.48
VPS29-212ENST00000621131 SNIP1Q8TAD8 396 aaKnown RBP12.04□□□□□ -0.48
VPS29-212ENST00000621131 PER1O15534 1290 aaPredicted RBP12.03□□□□□ -0.48
VPS29-212ENST00000621131 SH3BP2P78314 561 aa12.03□□□□□ -0.48
VPS29-212ENST00000621131 F12P00748 615 aaPredicted RBP12.02□□□□□ -0.49
VPS29-212ENST00000621131 PROCA1Q8NCQ7 364 aaPredicted RBP12.02□□□□□ -0.49
VPS29-212ENST00000621131 BAP1Q92560 729 aa12.02□□□□□ -0.49
VPS29-212ENST00000621131 TTC24A2A3L6 582 aaPredicted RBP12.01□□□□□ -0.49
VPS29-212ENST00000621131 TPRNQ4KMQ1 711 aa12.01□□□□□ -0.49
VPS29-212ENST00000621131 FBXO31Q5XUX0 539 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms