RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 DDRGK1Q96HY6 314 aa13.65□□□□□ -0.22
CDH1-214ENST00000621016 FANCAO15360 1455 aa13.65□□□□□ -0.22
CDH1-214ENST00000621016 GZF1Q9H116 711 aaPredicted RBP13.64□□□□□ -0.23
CDH1-214ENST00000621016 KDM2BQ8NHM5 1336 aa13.64□□□□□ -0.23
CDH1-214ENST00000621016 SEC24BO95487 1268 aa13.64□□□□□ -0.23
CDH1-214ENST00000621016 C8orf34Q49A92 452 aa13.64□□□□□ -0.23
CDH1-214ENST00000621016 NOS1P29475 1434 aa13.63□□□□□ -0.23
CDH1-214ENST00000621016 ZNF521Q96K83 1311 aa13.63□□□□□ -0.23
CDH1-214ENST00000621016 MAST1Q9Y2H9 1570 aa13.63□□□□□ -0.23
CDH1-214ENST00000621016 NSD3Q9BZ95 1437 aa13.63□□□□□ -0.23
CDH1-214ENST00000621016 MINK1Q8N4C8 1332 aaPredicted RBP13.63□□□□□ -0.23
CDH1-214ENST00000621016 ZMYM4Q5VZL5 1548 aa13.63□□□□□ -0.23
CDH1-214ENST00000621016 RLBP1P12271 317 aa13.62□□□□□ -0.23
CDH1-214ENST00000621016 ADGRL1O94910 1474 aa13.62□□□□□ -0.23
CDH1-214ENST00000621016 MYO5CQ9NQX4 1742 aa13.62□□□□□ -0.23
CDH1-214ENST00000621016 ASXL1Q8IXJ9 1541 aa13.62□□□□□ -0.23
CDH1-214ENST00000621016 PANK2Q9BZ23 570 aa13.61□□□□□ -0.23
CDH1-214ENST00000621016 STAG3Q9UJ98 1225 aa13.61□□□□□ -0.23
CDH1-214ENST00000621016 E9PCH4 1651 aa13.61□□□□□ -0.23
CDH1-214ENST00000621016 CFAP53Q96M91 514 aa13.61□□□□□ -0.23
CDH1-214ENST00000621016 STAC3Q96MF2 364 aa13.61□□□□□ -0.23
CDH1-214ENST00000621016 FTSJ3Q8IY81 847 aaKnown RBP13.6□□□□□ -0.23
CDH1-214ENST00000621016 FAM13BQ9NYF5 915 aa13.6□□□□□ -0.23
CDH1-214ENST00000621016 UNC13BO14795 1591 aa13.6□□□□□ -0.23
CDH1-214ENST00000621016 IQGAP3Q86VI3 1631 aa13.6□□□□□ -0.23
CDH1-214ENST00000621016 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.59□□□□□ -0.23
CDH1-214ENST00000621016 MLECQ14165 292 aa13.59□□□□□ -0.23
CDH1-214ENST00000621016 RUNDC1Q96C34 613 aa13.59□□□□□ -0.23
CDH1-214ENST00000621016 PCDHB15Q9Y5E8 787 aa13.59□□□□□ -0.23
CDH1-214ENST00000621016 NKTRP30414 1462 aaKnown RBP13.58□□□□□ -0.24
CDH1-214ENST00000621016 ELL2O00472 640 aaPredicted RBP13.58□□□□□ -0.24
CDH1-214ENST00000621016 CALD1Q05682 793 aaKnown RBP13.57□□□□□ -0.24
CDH1-214ENST00000621016 EIF2AK4Q9P2K8 1649 aaKnown RBP13.57□□□□□ -0.24
CDH1-214ENST00000621016 CGNL1Q0VF96 1302 aa13.57□□□□□ -0.24
CDH1-214ENST00000621016 RARSP54136 660 aaKnown RBP13.57□□□□□ -0.24
CDH1-214ENST00000621016 ZCCHC11Q5TAX3 1644 aaKnown RBP13.57□□□□□ -0.24
CDH1-214ENST00000621016 ABCC1P33527 1531 aa13.56□□□□□ -0.24
CDH1-214ENST00000621016 PLPPR3Q6T4P5 718 aa13.56□□□□□ -0.24
CDH1-214ENST00000621016 SMC4Q9NTJ3 1288 aa13.56□□□□□ -0.24
CDH1-214ENST00000621016 CLTCL1P53675 1640 aa13.56□□□□□ -0.24
CDH1-214ENST00000621016 ITPRIPQ8IWB1 547 aa13.56□□□□□ -0.24
CDH1-214ENST00000621016 ERVK-7P63135 1459 aa13.55□□□□□ -0.24
CDH1-214ENST00000621016 TRMT2AQ8IZ69 625 aaKnown RBP13.55□□□□□ -0.24
CDH1-214ENST00000621016 PDCL3Q9H2J4 239 aa13.55□□□□□ -0.24
CDH1-214ENST00000621016 EXOSC9Q06265 439 aaKnown RBP13.54□□□□□ -0.24
CDH1-214ENST00000621016 IDI1Q13907 227 aa13.54□□□□□ -0.24
CDH1-214ENST00000621016 C14orf93Q9H972 538 aaKnown RBP13.54□□□□□ -0.24
CDH1-214ENST00000621016 PIK3C2GO75747 1445 aa13.54□□□□□ -0.24
CDH1-214ENST00000621016 PLXNC1O60486 1568 aa13.54□□□□□ -0.24
CDH1-214ENST00000621016 PDZRN3Q9UPQ7 1066 aa13.54□□□□□ -0.24
CDH1-214ENST00000621016 ASXL2Q76L83 1435 aa13.54□□□□□ -0.24
CDH1-214ENST00000621016 MAPK8IP3Q9UPT6 1336 aa13.53□□□□□ -0.24
CDH1-214ENST00000621016 FBXO31Q5XUX0 539 aaPredicted RBP13.53□□□□□ -0.24
CDH1-214ENST00000621016 MADDQ8WXG6 1647 aa13.53□□□□□ -0.24
CDH1-214ENST00000621016 PRAM1Q96QH2 718 aa13.53□□□□□ -0.24
CDH1-214ENST00000621016 CHMP4AQ9BY43 222 aa13.53□□□□□ -0.24
CDH1-214ENST00000621016 EVC2Q86UK5 1308 aa13.53□□□□□ -0.24
CDH1-214ENST00000621016 PTPRTO14522 1441 aa13.52□□□□□ -0.24
CDH1-214ENST00000621016 PDE3AQ14432 1141 aa13.52□□□□□ -0.24
CDH1-214ENST00000621016 THUMPD2Q9BTF0 503 aaKnown RBP13.52□□□□□ -0.24
CDH1-214ENST00000621016 ATP7AQ04656 1500 aa13.52□□□□□ -0.25
CDH1-214ENST00000621016 HMOX1P09601 288 aa13.52□□□□□ -0.25
CDH1-214ENST00000621016 MFAP1P55081 439 aaKnown RBP13.52□□□□□ -0.25
CDH1-214ENST00000621016 ZNF830Q96NB3 372 aaPredicted RBP13.52□□□□□ -0.25
CDH1-214ENST00000621016 ZFYVE16Q7Z3T8 1539 aa13.52□□□□□ -0.25
CDH1-214ENST00000621016 NUTM2FA1L443 756 aa13.51□□□□□ -0.25
CDH1-214ENST00000621016 VGFO15240 615 aaPredicted RBP13.51□□□□□ -0.25
CDH1-214ENST00000621016 SOX12O15370 315 aa13.51□□□□□ -0.25
CDH1-214ENST00000621016 TRPM2O94759 1503 aa13.51□□□□□ -0.25
CDH1-214ENST00000621016 UPF2Q9HAU5 1272 aaKnown RBP13.51□□□□□ -0.25
CDH1-214ENST00000621016 ZBTB7CA1YPR0 619 aa13.51□□□□□ -0.25
CDH1-214ENST00000621016 CLCN1P35523 988 aa13.51□□□□□ -0.25
CDH1-214ENST00000621016 RIPK4P57078 832 aa13.51□□□□□ -0.25
CDH1-214ENST00000621016 MYH16Q9H6N6 1097 aa13.5□□□□□ -0.25
CDH1-214ENST00000621016 ZBTB22O15209 634 aa13.5□□□□□ -0.25
CDH1-214ENST00000621016 RTEL1-TNFRSF6BF6WH68 1400 aa13.5□□□□□ -0.25
CDH1-214ENST00000621016 ZFP91Q96JP5 570 aaPredicted RBP13.49□□□□□ -0.25
CDH1-214ENST00000621016 CABP1Q9NZU7 370 aa13.49□□□□□ -0.25
CDH1-214ENST00000621016 CYB5RLQ6IPT4 315 aa13.49□□□□□ -0.25
CDH1-214ENST00000621016 WAPLQ7Z5K2 1190 aa13.49□□□□□ -0.25
CDH1-214ENST00000621016 XRCC6P12956 609 aaKnown RBP eCLIP13.48□□□□□ -0.25
CDH1-214ENST00000621016 DZIP1LQ8IYY4 767 aaKnown RBP13.48□□□□□ -0.25
CDH1-214ENST00000621016 ANP32BQ92688 251 aaKnown RBP13.48□□□□□ -0.25
CDH1-214ENST00000621016 ZKSCAN2Q63HK3 967 aa13.48□□□□□ -0.25
CDH1-214ENST00000621016 SSH1Q8WYL5 1049 aa13.48□□□□□ -0.25
CDH1-214ENST00000621016 RWDD1Q9H446 243 aaPredicted RBP13.48□□□□□ -0.25
CDH1-214ENST00000621016 KIAA1211Q6ZU35 1233 aa13.47□□□□□ -0.25
CDH1-214ENST00000621016 C1orf115Q9H7X2 142 aa13.47□□□□□ -0.25
CDH1-214ENST00000621016 NOB1Q9ULX3 412 aaKnown RBP13.47□□□□□ -0.25
CDH1-214ENST00000621016 CD109Q6YHK3 1445 aa13.47□□□□□ -0.25
CDH1-214ENST00000621016 PMFBP1Q8TBY8 1022 aa13.47□□□□□ -0.25
CDH1-214ENST00000621016 OSCARQ8IYS5 282 aa13.47□□□□□ -0.25
CDH1-214ENST00000621016 NPATQ14207 1427 aa13.47□□□□□ -0.25
CDH1-214ENST00000621016 INSRP06213 1382 aa13.46□□□□□ -0.25
CDH1-214ENST00000621016 CERS3Q8IU89 383 aa13.46□□□□□ -0.25
CDH1-214ENST00000621016 POLR3AO14802 1390 aaPredicted RBP13.46□□□□□ -0.25
CDH1-214ENST00000621016 SYNMO15061 1565 aa13.46□□□□□ -0.26
CDH1-214ENST00000621016 TMPOP42166 694 aaKnown RBP13.46□□□□□ -0.26
CDH1-214ENST00000621016 TRIM27P14373 513 aa13.45□□□□□ -0.26
CDH1-214ENST00000621016 BECN1Q14457 450 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms