RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 BLMP54132 1417 aaPredicted RBP15.71■□□□□ 0.11
MSH6-213ENST00000614496 RLBP1P12271 317 aa15.71■□□□□ 0.11
MSH6-213ENST00000614496 TBC1D2Q9BYX2 928 aa15.7■□□□□ 0.1
MSH6-213ENST00000614496 ZMYM4Q5VZL5 1548 aa15.69■□□□□ 0.1
MSH6-213ENST00000614496 ASXL1Q8IXJ9 1541 aa15.69■□□□□ 0.1
MSH6-213ENST00000614496 CASC1Q6TDU7 716 aa15.69■□□□□ 0.1
MSH6-213ENST00000614496 TRAK2O60296 914 aa15.69■□□□□ 0.1
MSH6-213ENST00000614496 GPRASP1Q5JY77 1395 aa15.69■□□□□ 0.1
MSH6-213ENST00000614496 NUTM2FA1L443 756 aa15.68■□□□□ 0.1
MSH6-213ENST00000614496 CEP170Q5SW79 1584 aa15.68■□□□□ 0.1
MSH6-213ENST00000614496 TRAPPC8Q9Y2L5 1435 aa15.68■□□□□ 0.1
MSH6-213ENST00000614496 ABCC10Q5T3U5 1492 aa15.67■□□□□ 0.1
MSH6-213ENST00000614496 MAGI2Q86UL8 1455 aa15.67■□□□□ 0.1
MSH6-213ENST00000614496 FOXD4L5Q5VV16 416 aaPredicted RBP15.67■□□□□ 0.1
MSH6-213ENST00000614496 FOXD4L4Q8WXT5 416 aaPredicted RBP15.67■□□□□ 0.1
MSH6-213ENST00000614496 SSH1Q8WYL5 1049 aa15.67■□□□□ 0.1
MSH6-213ENST00000614496 ATF7IPQ6VMQ6 1270 aa15.67■□□□□ 0.1
MSH6-213ENST00000614496 RSPH6AQ9H0K4 717 aa15.67■□□□□ 0.1
MSH6-213ENST00000614496 DDX11L8A8MPP1 907 aa15.66■□□□□ 0.1
MSH6-213ENST00000614496 AAMPQ13685 434 aa15.66■□□□□ 0.1
MSH6-213ENST00000614496 TMEM57Q8N5G2 664 aa15.66■□□□□ 0.1
MSH6-213ENST00000614496 NUP160Q12769 1436 aa15.65■□□□□ 0.1
MSH6-213ENST00000614496 ZBTB7CA1YPR0 619 aa15.65■□□□□ 0.1
MSH6-213ENST00000614496 MCM4P33991 863 aa15.65■□□□□ 0.1
MSH6-213ENST00000614496 PRKAR2BP31323 418 aa15.65■□□□□ 0.1
MSH6-213ENST00000614496 NINLQ9Y2I6 1382 aa15.65■□□□□ 0.1
MSH6-213ENST00000614496 TMPOP42166 694 aaKnown RBP15.65■□□□□ 0.1
MSH6-213ENST00000614496 SLC4A10Q6U841 1118 aa15.64■□□□□ 0.09
MSH6-213ENST00000614496 NOL8Q76FK4 1167 aaKnown RBP15.64■□□□□ 0.09
MSH6-213ENST00000614496 KIF16BQ96L93 1317 aa15.64■□□□□ 0.09
MSH6-213ENST00000614496 C14orf37Q86TY3 774 aa15.64■□□□□ 0.09
MSH6-213ENST00000614496 THUMPD2Q9BTF0 503 aaKnown RBP15.64■□□□□ 0.09
MSH6-213ENST00000614496 CALD1Q05682 793 aaKnown RBP15.64■□□□□ 0.09
MSH6-213ENST00000614496 PLA2R1Q13018 1463 aa15.63■□□□□ 0.09
MSH6-213ENST00000614496 PRAM1Q96QH2 718 aa15.63■□□□□ 0.09
MSH6-213ENST00000614496 DDX49Q9Y6V7 483 aaKnown RBP15.63■□□□□ 0.09
MSH6-213ENST00000614496 TRIM27P14373 513 aa15.63■□□□□ 0.09
MSH6-213ENST00000614496 PTMAP06454 111 aaKnown RBP15.62■□□□□ 0.09
MSH6-213ENST00000614496 NOS1P29475 1434 aa15.62■□□□□ 0.09
MSH6-213ENST00000614496 DUOX2Q9NRD8 1548 aa15.62■□□□□ 0.09
MSH6-213ENST00000614496 FAM43AQ8N2R8 423 aa15.62■□□□□ 0.09
MSH6-213ENST00000614496 PIK3C2GO75747 1445 aa15.62■□□□□ 0.09
MSH6-213ENST00000614496 TBC1D32Q96NH3 1257 aa15.62■□□□□ 0.09
MSH6-213ENST00000614496 FBLN1P23142 703 aa15.61■□□□□ 0.09
MSH6-213ENST00000614496 MSNP26038 577 aaKnown RBP15.6■□□□□ 0.09
MSH6-213ENST00000614496 CABP1Q9NZU7 370 aa15.6■□□□□ 0.09
MSH6-213ENST00000614496 ZNF521Q96K83 1311 aa15.6■□□□□ 0.09
MSH6-213ENST00000614496 KDM5DQ9BY66 1539 aa15.6■□□□□ 0.09
MSH6-213ENST00000614496 RAPGEF3O95398 923 aa15.59■□□□□ 0.09
MSH6-213ENST00000614496 PLCH2O75038 1416 aa15.59■□□□□ 0.09
MSH6-213ENST00000614496 FOXD4L6Q3SYB3 417 aaPredicted RBP15.59■□□□□ 0.09
MSH6-213ENST00000614496 FOXD4L3Q6VB84 417 aaPredicted RBP15.59■□□□□ 0.09
MSH6-213ENST00000614496 EIF2AK4Q9P2K8 1649 aaKnown RBP15.59■□□□□ 0.09
MSH6-213ENST00000614496 PLCB2Q00722 1185 aa15.58■□□□□ 0.08
MSH6-213ENST00000614496 CHD1LQ86WJ1 897 aa15.57■□□□□ 0.08
MSH6-213ENST00000614496 PRKCSHP14314 528 aaPredicted RBP15.57■□□□□ 0.08
MSH6-213ENST00000614496 ARID3AQ99856 593 aa15.57■□□□□ 0.08
MSH6-213ENST00000614496 MRE11P49959 708 aa15.56■□□□□ 0.08
MSH6-213ENST00000614496 WDR7Q9Y4E6 1490 aa15.56■□□□□ 0.08
MSH6-213ENST00000614496 SAMD9LQ8IVG5 1584 aa15.56■□□□□ 0.08
MSH6-213ENST00000614496 DNTTIP2Q5QJE6 756 aaKnown RBP15.56■□□□□ 0.08
MSH6-213ENST00000614496 RTF1Q92541 710 aaKnown RBP15.55■□□□□ 0.08
MSH6-213ENST00000614496 CDC42BPAQ5VT25 1732 aa15.55■□□□□ 0.08
MSH6-213ENST00000614496 C14orf93Q9H972 538 aaKnown RBP15.55■□□□□ 0.08
MSH6-213ENST00000614496 POLR3AO14802 1390 aaPredicted RBP15.55■□□□□ 0.08
MSH6-213ENST00000614496 CDK19Q9BWU1 502 aa15.54■□□□□ 0.08
MSH6-213ENST00000614496 PANK2Q9BZ23 570 aa15.54■□□□□ 0.08
MSH6-213ENST00000614496 TRIM6-TRIM34B2RNG4 842 aa15.54■□□□□ 0.08
MSH6-213ENST00000614496 GNAI1P63096 354 aa15.54■□□□□ 0.08
MSH6-213ENST00000614496 TRMT2AQ8IZ69 625 aaKnown RBP15.54■□□□□ 0.08
MSH6-213ENST00000614496 INSRP06213 1382 aa15.54■□□□□ 0.08
MSH6-213ENST00000614496 COG3Q96JB2 828 aa15.54■□□□□ 0.08
MSH6-213ENST00000614496 ABCA8O94911 1581 aa15.54■□□□□ 0.08
MSH6-213ENST00000614496 MCTP1Q6DN14 999 aa15.54■□□□□ 0.08
MSH6-213ENST00000614496 LMOD3Q0VAK6 560 aa15.53■□□□□ 0.08
MSH6-213ENST00000614496 TWISTNBQ3B726 338 aaPredicted RBP15.53■□□□□ 0.08
MSH6-213ENST00000614496 ADGRL1O94910 1474 aa15.53■□□□□ 0.08
MSH6-213ENST00000614496 NECTIN2Q92692 538 aa15.53■□□□□ 0.08
MSH6-213ENST00000614496 ARHGEF5Q12774 1597 aa15.53■□□□□ 0.08
MSH6-213ENST00000614496 POLR1AO95602 1720 aaPredicted RBP15.52■□□□□ 0.08
MSH6-213ENST00000614496 CT47B1P0C2W7 299 aaPredicted RBP15.52■□□□□ 0.08
MSH6-213ENST00000614496 API5Q9BZZ5 524 aaKnown RBP15.52■□□□□ 0.08
MSH6-213ENST00000614496 SKOR2Q2VWA4 1001 aaPredicted RBP15.52■□□□□ 0.08
MSH6-213ENST00000614496 GRPEL1Q9HAV7 217 aa15.52■□□□□ 0.08
MSH6-213ENST00000614496 PTMSP20962 102 aa15.52■□□□□ 0.07
MSH6-213ENST00000614496 FANCAO15360 1455 aa15.51■□□□□ 0.07
MSH6-213ENST00000614496 ST18O60284 1047 aa15.51■□□□□ 0.07
MSH6-213ENST00000614496 CDC45O75419 566 aa15.51■□□□□ 0.07
MSH6-213ENST00000614496 DCTN1Q14203 1278 aa15.51■□□□□ 0.07
MSH6-213ENST00000614496 HSP90AA2PQ14568 343 aaPredicted RBP15.5■□□□□ 0.07
MSH6-213ENST00000614496 XRCC6P12956 609 aaKnown RBP eCLIP15.5■□□□□ 0.072e-10■■□□□ 12.2
MSH6-213ENST00000614496 HAP1P54257 671 aaPredicted RBP15.5■□□□□ 0.07
MSH6-213ENST00000614496 RILPL2Q969X0 211 aa15.5■□□□□ 0.07
MSH6-213ENST00000614496 PRDM15P57071 1507 aaPredicted RBP15.5■□□□□ 0.07
MSH6-213ENST00000614496 MAST1Q9Y2H9 1570 aa15.5■□□□□ 0.07
MSH6-213ENST00000614496 TRPM1Q7Z4N2 1603 aa15.5■□□□□ 0.07
MSH6-213ENST00000614496 NPC1L1Q9UHC9 1359 aa15.5■□□□□ 0.07
MSH6-213ENST00000614496 IDI1Q13907 227 aa15.5■□□□□ 0.07
MSH6-213ENST00000614496 MCCP23508 829 aa15.49■□□□□ 0.07
MSH6-213ENST00000614496 OS9Q13438 667 aaPredicted RBP15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms