RNA–Protein interactions for RNA: ENST00000613459.4

HMGXB3-206, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-206ENST00000613459 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.03■□□□□ 0.96
HMGXB3-206ENST00000613459 CTDP1Q9Y5B0 961 aaPredicted RBP21.03■□□□□ 0.96
HMGXB3-206ENST00000613459 NUTM2FA1L443 756 aa21.02■□□□□ 0.96
HMGXB3-206ENST00000613459 APPP05067 770 aa21.02■□□□□ 0.96
HMGXB3-206ENST00000613459 MCM2P49736 904 aa21.02■□□□□ 0.96
HMGXB3-206ENST00000613459 CALRP27797 417 aaKnown RBP21.02■□□□□ 0.96
HMGXB3-206ENST00000613459 MNS1Q8NEH6 495 aa21.02■□□□□ 0.96
HMGXB3-206ENST00000613459 RUFY1Q96T51 708 aa21.02■□□□□ 0.96
HMGXB3-206ENST00000613459 NFKBIBQ15653 356 aa21.02■□□□□ 0.95
HMGXB3-206ENST00000613459 NFXL1Q6ZNB6 911 aa21.02■□□□□ 0.95
HMGXB3-206ENST00000613459 MSH5O43196 834 aa21.01■□□□□ 0.95
HMGXB3-206ENST00000613459 WASHC2AQ641Q2 1341 aa21.01■□□□□ 0.95
HMGXB3-206ENST00000613459 TSPYL4Q9UJ04 414 aa21.01■□□□□ 0.95
HMGXB3-206ENST00000613459 VPS37CA5D8V6 355 aaPredicted RBP21■□□□□ 0.95
HMGXB3-206ENST00000613459 DHX8Q14562 1220 aaKnown RBP21■□□□□ 0.95
HMGXB3-206ENST00000613459 BRMS1Q9HCU9 246 aa21■□□□□ 0.95
HMGXB3-206ENST00000613459 IFT57Q9NWB7 429 aa21■□□□□ 0.95
HMGXB3-206ENST00000613459 FYCO1Q9BQS8 1478 aa21■□□□□ 0.95
HMGXB3-206ENST00000613459 KIF7Q2M1P5 1343 aa21■□□□□ 0.95
HMGXB3-206ENST00000613459 IGF1RP08069 1367 aa21■□□□□ 0.95
HMGXB3-206ENST00000613459 VPS37DQ86XT2 251 aa20.99■□□□□ 0.95
HMGXB3-206ENST00000613459 MBD3O95983 291 aa20.99■□□□□ 0.95
HMGXB3-206ENST00000613459 RALYLQ86SE5 291 aaKnown RBP20.99■□□□□ 0.95
HMGXB3-206ENST00000613459 RRBP1Q9P2E9 1410 aaKnown RBP20.99■□□□□ 0.95
HMGXB3-206ENST00000613459 PATL2C9JE40 543 aaKnown RBP20.99■□□□□ 0.95
HMGXB3-206ENST00000613459 HIP1O00291 1037 aa20.99■□□□□ 0.95
HMGXB3-206ENST00000613459 XBP1P17861 261 aa20.99■□□□□ 0.95
HMGXB3-206ENST00000613459 OLFM4Q6UX06 510 aa20.98■□□□□ 0.95
HMGXB3-206ENST00000613459 GNAI3P08754 354 aa20.97■□□□□ 0.95
HMGXB3-206ENST00000613459 CWC15Q9P013 229 aaKnown RBP20.97■□□□□ 0.95
HMGXB3-206ENST00000613459 HSP90B2PQ58FF3 399 aa20.97■□□□□ 0.95
HMGXB3-206ENST00000613459 NASPP49321 788 aaPredicted RBP20.96■□□□□ 0.95
HMGXB3-206ENST00000613459 CNTROBQ8N137 903 aa20.96■□□□□ 0.95
HMGXB3-206ENST00000613459 CCP110O43303 1012 aa20.96■□□□□ 0.95
HMGXB3-206ENST00000613459 GAPVD1Q14C86 1478 aa20.96■□□□□ 0.95
HMGXB3-206ENST00000613459 PSME1Q06323 249 aa20.96■□□□□ 0.95
HMGXB3-206ENST00000613459 UBTFL1P0CB47 393 aaPredicted RBP20.95■□□□□ 0.94
HMGXB3-206ENST00000613459 RRP12Q5JTH9 1297 aaKnown RBP20.95■□□□□ 0.94
HMGXB3-206ENST00000613459 ERCC4Q92889 916 aaPredicted RBP20.94■□□□□ 0.94
HMGXB3-206ENST00000613459 PDCP20941 246 aa20.94■□□□□ 0.94
HMGXB3-206ENST00000613459 FGD5Q6ZNL6 1462 aa20.94■□□□□ 0.94
HMGXB3-206ENST00000613459 RAPGEF4Q8WZA2 1011 aa20.94■□□□□ 0.94
HMGXB3-206ENST00000613459 ANKRD50Q9ULJ7 1429 aa20.94■□□□□ 0.94
HMGXB3-206ENST00000613459 DHX16O60231 1041 aaKnown RBP20.94■□□□□ 0.94
HMGXB3-206ENST00000613459 R3HCC1Q9Y3T6 440 aaKnown RBP20.93■□□□□ 0.94
HMGXB3-206ENST00000613459 LNPKQ9C0E8 428 aa20.93■□□□□ 0.94
HMGXB3-206ENST00000613459 CCDC43Q96MW1 224 aaKnown RBP20.92■□□□□ 0.94
HMGXB3-206ENST00000613459 CCDC66A2RUB6 948 aa20.92■□□□□ 0.94
HMGXB3-206ENST00000613459 LRRC9Q6ZRR7 1453 aa20.92■□□□□ 0.94
HMGXB3-206ENST00000613459 GAS2L2Q8NHY3 880 aa20.91■□□□□ 0.94
HMGXB3-206ENST00000613459 GCC1Q96CN9 775 aa20.91■□□□□ 0.94
HMGXB3-206ENST00000613459 CASKIN1Q8WXD9 1431 aa20.91■□□□□ 0.94
HMGXB3-206ENST00000613459 CT47B1P0C2W7 299 aaPredicted RBP20.91■□□□□ 0.94
HMGXB3-206ENST00000613459 RABEP1Q15276 862 aa20.91■□□□□ 0.94
HMGXB3-206ENST00000613459 ERC1Q8IUD2 1116 aa20.91■□□□□ 0.94
HMGXB3-206ENST00000613459 RIC3Q7Z5B4 369 aa20.91■□□□□ 0.94
HMGXB3-206ENST00000613459 CCDC173Q0VFZ6 552 aa20.9■□□□□ 0.94
HMGXB3-206ENST00000613459 CCDC30Q5VVM6 783 aa20.9■□□□□ 0.94
HMGXB3-206ENST00000613459 PIP4K2AP48426 406 aaPredicted RBP20.9■□□□□ 0.94
HMGXB3-206ENST00000613459 PDE3AQ14432 1141 aa20.9■□□□□ 0.94
HMGXB3-206ENST00000613459 SART3Q15020 963 aaKnown RBP20.89■□□□□ 0.94
HMGXB3-206ENST00000613459 MYO6Q9UM54 1294 aa20.89■□□□□ 0.94
HMGXB3-206ENST00000613459 HFM1A2PYH4 1435 aa20.89■□□□□ 0.93
HMGXB3-206ENST00000613459 CLASRPQ8N2M8 674 aaKnown RBP20.88■□□□□ 0.93
HMGXB3-206ENST00000613459 KIF21BO75037 1637 aa20.88■□□□□ 0.93
HMGXB3-206ENST00000613459 RDXP35241 583 aaKnown RBP20.88■□□□□ 0.93
HMGXB3-206ENST00000613459 DCTN1Q14203 1278 aa20.88■□□□□ 0.93
HMGXB3-206ENST00000613459 PODXL2Q9NZ53 605 aa20.88■□□□□ 0.93
HMGXB3-206ENST00000613459 TRAK2O60296 914 aa20.86■□□□□ 0.93
HMGXB3-206ENST00000613459 HMGN5P82970 282 aaKnown RBP20.86■□□□□ 0.93
HMGXB3-206ENST00000613459 ZNF396Q96N95 335 aaPredicted RBP20.86■□□□□ 0.93
HMGXB3-206ENST00000613459 TBC1D2BQ9UPU7 963 aa20.86■□□□□ 0.93
HMGXB3-206ENST00000613459 RBM33Q96EV2 1170 aaKnown RBP20.85■□□□□ 0.93
HMGXB3-206ENST00000613459 TSPY26PQ9H489 355 aa20.85■□□□□ 0.93
HMGXB3-206ENST00000613459 CWC22Q9HCG8 908 aaKnown RBP20.85■□□□□ 0.93
HMGXB3-206ENST00000613459 SDF4Q9BRK5 362 aa20.85■□□□□ 0.93
HMGXB3-206ENST00000613459 WASHC4Q2M389 1173 aa20.85■□□□□ 0.93
HMGXB3-206ENST00000613459 NAP1L1P55209 391 aaKnown RBP20.84■□□□□ 0.93
HMGXB3-206ENST00000613459 SMARCE1Q969G3 411 aa20.84■□□□□ 0.93
HMGXB3-206ENST00000613459 UBE2Q2Q8WVN8 375 aa20.84■□□□□ 0.93
HMGXB3-206ENST00000613459 NECTIN2Q92692 538 aa20.84■□□□□ 0.93
HMGXB3-206ENST00000613459 RAD54L2Q9Y4B4 1467 aa20.84■□□□□ 0.93
HMGXB3-206ENST00000613459 CT47A1Q5JQC4 288 aaPredicted RBP20.83■□□□□ 0.93
HMGXB3-206ENST00000613459 FSD1Q9BTV5 496 aa20.83■□□□□ 0.93
HMGXB3-206ENST00000613459 NCOA2Q15596 1464 aa20.83■□□□□ 0.93
HMGXB3-206ENST00000613459 PANK1Q8TE04 598 aa20.83■□□□□ 0.93
HMGXB3-206ENST00000613459 RAD21O60216 631 aa20.83■□□□□ 0.93
HMGXB3-206ENST00000613459 FILIP1LQ4L180 1135 aa20.83■□□□□ 0.92
HMGXB3-206ENST00000613459 NEUROD6Q96NK8 337 aa20.83■□□□□ 0.92
HMGXB3-206ENST00000613459 ZNF644Q9H582 1327 aaPredicted RBP20.83■□□□□ 0.92
HMGXB3-206ENST00000613459 KINO60870 393 aaKnown RBP20.83■□□□□ 0.92
HMGXB3-206ENST00000613459 EPS15P42566 896 aa20.82■□□□□ 0.92
HMGXB3-206ENST00000613459 AEBP1Q8IUX7 1158 aa20.82■□□□□ 0.92
HMGXB3-206ENST00000613459 OFD1O75665 1012 aa20.81■□□□□ 0.92
HMGXB3-206ENST00000613459 SLC3A2P08195 630 aaKnown RBP20.81■□□□□ 0.92
HMGXB3-206ENST00000613459 CCDC191Q8NCU4 936 aa20.81■□□□□ 0.92
HMGXB3-206ENST00000613459 PDIA4P13667 645 aaKnown RBP20.81■□□□□ 0.92
HMGXB3-206ENST00000613459 CAGE1Q8TC20 777 aa20.81■□□□□ 0.92
HMGXB3-206ENST00000613459 ODF2Q5BJF6 829 aa20.81■□□□□ 0.92
HMGXB3-206ENST00000613459 ERICH3Q5RHP9 1530 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms