RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 SLC52A1Q9NWF4 448 aa16.91■□□□□ 0.3
GGA3-220ENST00000613421 MAPKBP1O60336 1514 aa16.91■□□□□ 0.3
GGA3-220ENST00000613421 PSME1Q06323 249 aa16.91■□□□□ 0.3
GGA3-220ENST00000613421 DNAJC5BQ9UF47 199 aa16.91■□□□□ 0.3
GGA3-220ENST00000613421 KIF3AQ9Y496 699 aa16.91■□□□□ 0.3
GGA3-220ENST00000613421 WDR63Q8IWG1 891 aa16.9■□□□□ 0.3
GGA3-220ENST00000613421 RUFY2Q8WXA3 655 aa16.9■□□□□ 0.3
GGA3-220ENST00000613421 PDZRN3Q9UPQ7 1066 aa16.9■□□□□ 0.3
GGA3-220ENST00000613421 ATP6V1DQ9Y5K8 247 aa16.9■□□□□ 0.3
GGA3-220ENST00000613421 BACH2Q9BYV9 841 aa16.9■□□□□ 0.3
GGA3-220ENST00000613421 THOC2Q8NI27 1593 aaKnown RBP16.9■□□□□ 0.3
GGA3-220ENST00000613421 TSR2Q969E8 191 aaKnown RBP16.89■□□□□ 0.3
GGA3-220ENST00000613421 TULP1O00294 542 aaPredicted RBP16.89■□□□□ 0.29
GGA3-220ENST00000613421 TTC5Q8N0Z6 440 aa16.89■□□□□ 0.29
GGA3-220ENST00000613421 CDC45O75419 566 aa16.88■□□□□ 0.29
GGA3-220ENST00000613421 ANO2Q9NQ90 1003 aa16.88■□□□□ 0.29
GGA3-220ENST00000613421 CDK19Q9BWU1 502 aa16.88■□□□□ 0.29
GGA3-220ENST00000613421 TPM4P67936 248 aa16.87■□□□□ 0.29
GGA3-220ENST00000613421 IFIT2P09913 472 aaKnown RBP16.87■□□□□ 0.29
GGA3-220ENST00000613421 DDX58O95786 925 aaKnown RBP16.87■□□□□ 0.29
GGA3-220ENST00000613421 CT47B1P0C2W7 299 aaPredicted RBP16.87■□□□□ 0.29
GGA3-220ENST00000613421 FOXD4L6Q3SYB3 417 aaPredicted RBP16.87■□□□□ 0.29
GGA3-220ENST00000613421 FOXD4L3Q6VB84 417 aaPredicted RBP16.87■□□□□ 0.29
GGA3-220ENST00000613421 CABP1Q9NZU7 370 aa16.87■□□□□ 0.29
GGA3-220ENST00000613421 CCDC9Q9Y3X0 531 aaKnown RBP16.86■□□□□ 0.29
GGA3-220ENST00000613421 ZKSCAN1P17029 563 aaPredicted RBP16.86■□□□□ 0.29
GGA3-220ENST00000613421 NOB1Q9ULX3 412 aaKnown RBP16.86■□□□□ 0.29
GGA3-220ENST00000613421 NLRP6P59044 892 aa16.85■□□□□ 0.29
GGA3-220ENST00000613421 TWISTNBQ3B726 338 aaPredicted RBP16.85■□□□□ 0.29
GGA3-220ENST00000613421 PTPRKQ15262 1439 aa16.85■□□□□ 0.29
GGA3-220ENST00000613421 NSD3Q9BZ95 1437 aa16.85■□□□□ 0.29
GGA3-220ENST00000613421 ZNF608Q9ULD9 1512 aaPredicted RBP16.85■□□□□ 0.29
GGA3-220ENST00000613421 UGGT2Q9NYU1 1516 aa16.85■□□□□ 0.29
GGA3-220ENST00000613421 SLFN5Q08AF3 891 aa16.85■□□□□ 0.29
GGA3-220ENST00000613421 H3BQV1 296 aa16.84■□□□□ 0.29
GGA3-220ENST00000613421 RAPGEF3O95398 923 aa16.84■□□□□ 0.29
GGA3-220ENST00000613421 IFFO2Q5TF58 517 aa16.84■□□□□ 0.29
GGA3-220ENST00000613421 ISY1Q9ULR0 285 aaKnown RBP16.84■□□□□ 0.29
GGA3-220ENST00000613421 HSP90AB4PQ58FF6 505 aa16.84■□□□□ 0.29
GGA3-220ENST00000613421 NUCB2P80303 420 aa16.84■□□□□ 0.29
GGA3-220ENST00000613421 ATAD2Q6PL18 1390 aa16.84■□□□□ 0.29
GGA3-220ENST00000613421 TXNDC2Q86VQ3 553 aa16.84■□□□□ 0.29
GGA3-220ENST00000613421 FAM184AQ8NB25 1140 aa16.83■□□□□ 0.29
GGA3-220ENST00000613421 NUTM2GQ5VZR2 741 aa16.83■□□□□ 0.28
GGA3-220ENST00000613421 CCDC34Q96HJ3 373 aa16.83■□□□□ 0.28
GGA3-220ENST00000613421 GAS2L2Q8NHY3 880 aa16.83■□□□□ 0.28
GGA3-220ENST00000613421 G3BP1Q13283 466 aaKnown RBP eCLIP16.83■□□□□ 0.28
GGA3-220ENST00000613421 CHMP4CQ96CF2 233 aa16.82■□□□□ 0.28
GGA3-220ENST00000613421 GCC1Q96CN9 775 aa16.82■□□□□ 0.28
GGA3-220ENST00000613421 UBTFL1P0CB47 393 aaPredicted RBP16.82■□□□□ 0.28
GGA3-220ENST00000613421 MVPQ14764 893 aaKnown RBP16.82■□□□□ 0.28
GGA3-220ENST00000613421 SF3A1Q15459 793 aaKnown RBP16.82■□□□□ 0.28
GGA3-220ENST00000613421 ATF7IPQ6VMQ6 1270 aa16.81■□□□□ 0.28
GGA3-220ENST00000613421 WWC1Q8IX03 1113 aa16.81■□□□□ 0.28
GGA3-220ENST00000613421 TOMM22Q9NS69 142 aa16.81■□□□□ 0.28
GGA3-220ENST00000613421 GPATCH8Q9UKJ3 1502 aaKnown RBP16.8■□□□□ 0.28
GGA3-220ENST00000613421 RTEL1-TNFRSF6BF6WH68 1400 aa16.8■□□□□ 0.28
GGA3-220ENST00000613421 C1orf115Q9H7X2 142 aa16.8■□□□□ 0.28
GGA3-220ENST00000613421 GNAI3P08754 354 aa16.8■□□□□ 0.28
GGA3-220ENST00000613421 ZNF692Q9BU19 519 aaPredicted RBP16.8■□□□□ 0.28
GGA3-220ENST00000613421 ERC2O15083 957 aa16.8■□□□□ 0.28
GGA3-220ENST00000613421 CCDC30Q5VVM6 783 aa16.8■□□□□ 0.28
GGA3-220ENST00000613421 LRRFIP1Q32MZ4 808 aaKnown RBP16.79■□□□□ 0.28
GGA3-220ENST00000613421 RNF20Q5VTR2 975 aa16.79■□□□□ 0.28
GGA3-220ENST00000613421 RAPGEF4Q8WZA2 1011 aa16.79■□□□□ 0.28
GGA3-220ENST00000613421 CTTNBP2Q8WZ74 1663 aa16.78■□□□□ 0.28
GGA3-220ENST00000613421 EVA1CP58658 441 aa16.78■□□□□ 0.28
GGA3-220ENST00000613421 SULT6B1Q6IMI4 303 aa16.78■□□□□ 0.28
GGA3-220ENST00000613421 RAPGEF6Q8TEU7 1601 aa16.78■□□□□ 0.28
GGA3-220ENST00000613421 RSPH6AQ9H0K4 717 aa16.77■□□□□ 0.28
GGA3-220ENST00000613421 FAM135AQ9P2D6 1515 aa16.77■□□□□ 0.28
GGA3-220ENST00000613421 ADGRL1O94910 1474 aa16.77■□□□□ 0.28
GGA3-220ENST00000613421 MCTP1Q6DN14 999 aa16.77■□□□□ 0.27
GGA3-220ENST00000613421 ABTB2Q8N961 1025 aa16.77■□□□□ 0.27
GGA3-220ENST00000613421 ARID3AQ99856 593 aa16.76■□□□□ 0.27
GGA3-220ENST00000613421 GTF2E1P29083 439 aaPredicted RBP16.76■□□□□ 0.27
GGA3-220ENST00000613421 CFAP43Q8NDM7 1665 aa16.75■□□□□ 0.27
GGA3-220ENST00000613421 FCHSD2O94868 740 aa16.75■□□□□ 0.27
GGA3-220ENST00000613421 SMC3Q9UQE7 1217 aa16.75■□□□□ 0.27
GGA3-220ENST00000613421 FRAT2O75474 233 aaPredicted RBP16.75■□□□□ 0.27
GGA3-220ENST00000613421 TMPOP42166 694 aaKnown RBP16.74■□□□□ 0.27
GGA3-220ENST00000613421 RIC3Q7Z5B4 369 aa16.74■□□□□ 0.27
GGA3-220ENST00000613421 SCAF11Q99590 1463 aaKnown RBP16.74■□□□□ 0.27
GGA3-220ENST00000613421 GPRASP1Q5JY77 1395 aa16.74■□□□□ 0.27
GGA3-220ENST00000613421 AIMP1Q12904 312 aaKnown RBP16.74■□□□□ 0.27
GGA3-220ENST00000613421 ADGRF5Q8IZF2 1346 aa16.74■□□□□ 0.27
GGA3-220ENST00000613421 SLC4A2P04920 1241 aa16.73■□□□□ 0.27
GGA3-220ENST00000613421 NLRP2Q9NX02 1062 aa16.73■□□□□ 0.27
GGA3-220ENST00000613421 GOLGA6L19H0YKK7 550 aa16.73■□□□□ 0.27
GGA3-220ENST00000613421 ZNF428Q96B54 188 aa16.73■□□□□ 0.27
GGA3-220ENST00000613421 DISP3Q9P2K9 1392 aa16.73■□□□□ 0.27
GGA3-220ENST00000613421 NKTRP30414 1462 aaKnown RBP16.72■□□□□ 0.27
GGA3-220ENST00000613421 SURF6O75683 361 aaKnown RBP16.72■□□□□ 0.27
GGA3-220ENST00000613421 GNAI2P04899 355 aa16.72■□□□□ 0.27
GGA3-220ENST00000613421 VPS37CA5D8V6 355 aaPredicted RBP16.72■□□□□ 0.27
GGA3-220ENST00000613421 CD109Q6YHK3 1445 aa16.72■□□□□ 0.27
GGA3-220ENST00000613421 RABEP1Q15276 862 aa16.72■□□□□ 0.27
GGA3-220ENST00000613421 C20orf194Q5TEA3 1177 aa16.72■□□□□ 0.27
GGA3-220ENST00000613421 ITSN2Q9NZM3 1697 aa16.72■□□□□ 0.27
GGA3-220ENST00000613421 RASSF8Q8NHQ8 419 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms