RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 RCAN3Q9UKA8 241 aa19.52■□□□□ 0.72
CDH1-213ENST00000612417 SBNO2Q9Y2G9 1366 aa19.52■□□□□ 0.72
CDH1-213ENST00000612417 ARHGEF28Q8N1W1 1705 aaKnown RBP19.51■□□□□ 0.71
CDH1-213ENST00000612417 UBR1Q8IWV7 1749 aa19.51■□□□□ 0.71
CDH1-213ENST00000612417 SAFB2Q14151 953 aaKnown RBP eCLIP19.5■□□□□ 0.71
CDH1-213ENST00000612417 ASXL1Q8IXJ9 1541 aa19.5■□□□□ 0.71
CDH1-213ENST00000612417 NLRP1Q9C000 1473 aa19.49■□□□□ 0.71
CDH1-213ENST00000612417 NPC1L1Q9UHC9 1359 aa19.49■□□□□ 0.71
CDH1-213ENST00000612417 YTHDC2Q9H6S0 1430 aaKnown RBP19.48■□□□□ 0.71
CDH1-213ENST00000612417 KNSTRNQ9Y448 316 aa19.48■□□□□ 0.71
CDH1-213ENST00000612417 POGKQ9P215 609 aa19.47■□□□□ 0.71
CDH1-213ENST00000612417 TMEM2Q9UHN6 1383 aa19.47■□□□□ 0.71
CDH1-213ENST00000612417 AMER1Q5JTC6 1135 aaPredicted RBP19.47■□□□□ 0.71
CDH1-213ENST00000612417 PRAM1Q96QH2 718 aa19.45■□□□□ 0.7
CDH1-213ENST00000612417 EVC2Q86UK5 1308 aa19.45■□□□□ 0.7
CDH1-213ENST00000612417 RIMS1Q86UR5 1692 aaKnown RBP19.44■□□□□ 0.7
CDH1-213ENST00000612417 PPP2R1AP30153 589 aa19.43■□□□□ 0.7
CDH1-213ENST00000612417 PTPRMP28827 1452 aa19.42■□□□□ 0.7
CDH1-213ENST00000612417 CDCA7LQ96GN5 454 aa19.42■□□□□ 0.7
CDH1-213ENST00000612417 SALL2Q9Y467 1007 aaPredicted RBP19.42■□□□□ 0.7
CDH1-213ENST00000612417 TXNDC2Q86VQ3 553 aa19.42■□□□□ 0.7
CDH1-213ENST00000612417 EID1Q9Y6B2 187 aa19.42■□□□□ 0.7
CDH1-213ENST00000612417 MINK1Q8N4C8 1332 aaPredicted RBP19.41■□□□□ 0.7
CDH1-213ENST00000612417 SETD1AO15047 1707 aaKnown RBP19.41■□□□□ 0.7
CDH1-213ENST00000612417 NRXN3Q9Y4C0 1643 aa19.41■□□□□ 0.7
CDH1-213ENST00000612417 EXOC6Q8TAG9 804 aa19.4■□□□□ 0.7
CDH1-213ENST00000612417 LTKP29376 864 aa19.4■□□□□ 0.7
CDH1-213ENST00000612417 CABP2Q9NPB3 220 aa19.39■□□□□ 0.69
CDH1-213ENST00000612417 ADAMTS8Q9UP79 889 aa19.39■□□□□ 0.69
CDH1-213ENST00000612417 THEMISQ8N1K5 641 aaPredicted RBP19.39■□□□□ 0.69
CDH1-213ENST00000612417 TULP4Q9NRJ4 1543 aa19.38■□□□□ 0.69
CDH1-213ENST00000612417 SRPK2P78362 688 aaKnown RBP19.38■□□□□ 0.69
CDH1-213ENST00000612417 SLC12A5Q9H2X9 1139 aa19.38■□□□□ 0.69
CDH1-213ENST00000612417 METP08581 1390 aa19.38■□□□□ 0.69
CDH1-213ENST00000612417 WAPLQ7Z5K2 1190 aa19.37■□□□□ 0.69
CDH1-213ENST00000612417 PUS7Q96PZ0 661 aaKnown RBP19.36■□□□□ 0.69
CDH1-213ENST00000612417 ABCC11Q96J66 1382 aa19.36■□□□□ 0.69
CDH1-213ENST00000612417 ADAMTSL3P82987 1691 aa19.35■□□□□ 0.69
CDH1-213ENST00000612417 ZNF521Q96K83 1311 aa19.35■□□□□ 0.69
CDH1-213ENST00000612417 PLEKHG1Q9ULL1 1385 aa19.35■□□□□ 0.69
CDH1-213ENST00000612417 WDR43Q15061 677 aaKnown RBP eCLIP19.35■□□□□ 0.69
CDH1-213ENST00000612417 CARD14Q9BXL6 1004 aa19.35■□□□□ 0.69
CDH1-213ENST00000612417 DLC1Q96QB1 1528 aa19.34■□□□□ 0.69
CDH1-213ENST00000612417 PLEKHH1Q9ULM0 1364 aa19.33■□□□□ 0.69
CDH1-213ENST00000612417 TCERG1O14776 1098 aaKnown RBP19.32■□□□□ 0.68
CDH1-213ENST00000612417 SLIT1O75093 1534 aa19.32■□□□□ 0.68
CDH1-213ENST00000612417 SLC26A8Q96RN1 970 aa19.32■□□□□ 0.68
CDH1-213ENST00000612417 CDK19Q9BWU1 502 aa19.32■□□□□ 0.68
CDH1-213ENST00000612417 ADAMTS13Q76LX8 1427 aa19.31■□□□□ 0.68
CDH1-213ENST00000612417 ARHGAP23Q9P227 1491 aa19.31■□□□□ 0.68
CDH1-213ENST00000612417 NOP58Q9Y2X3 529 aaKnown RBP19.3■□□□□ 0.68
CDH1-213ENST00000612417 CEP170BQ9Y4F5 1589 aaPredicted RBP19.3■□□□□ 0.68
CDH1-213ENST00000612417 SETD1BQ9UPS6 1966 aaKnown RBP19.3■□□□□ 0.68
CDH1-213ENST00000612417 DUSP27Q5VZP5 1158 aa19.29■□□□□ 0.68
CDH1-213ENST00000612417 NSD3Q9BZ95 1437 aa19.29■□□□□ 0.68
CDH1-213ENST00000612417 ANP32AP39687 249 aaKnown RBP19.29■□□□□ 0.68
CDH1-213ENST00000612417 MS4A1P11836 297 aa19.28■□□□□ 0.68
CDH1-213ENST00000612417 ATAD2Q6PL18 1390 aa19.28■□□□□ 0.68
CDH1-213ENST00000612417 KNDC1Q76NI1 1749 aa19.27■□□□□ 0.68
CDH1-213ENST00000612417 ANKRD36BQ8N2N9 1353 aa19.26■□□□□ 0.67
CDH1-213ENST00000612417 PLIN1O60240 522 aa19.26■□□□□ 0.67
CDH1-213ENST00000612417 GOLGA2Q08379 1002 aa19.26■□□□□ 0.67
CDH1-213ENST00000612417 SIRT1Q96EB6 747 aa19.26■□□□□ 0.67
CDH1-213ENST00000612417 IPO9Q96P70 1041 aaKnown RBP19.26■□□□□ 0.67
CDH1-213ENST00000612417 NINLQ9Y2I6 1382 aa19.25■□□□□ 0.67
CDH1-213ENST00000612417 TECPR2O15040 1411 aa19.25■□□□□ 0.67
CDH1-213ENST00000612417 FAM135BQ49AJ0 1406 aa19.25■□□□□ 0.67
CDH1-213ENST00000612417 CRBNQ96SW2 442 aa19.24■□□□□ 0.67
CDH1-213ENST00000612417 USP32Q8NFA0 1604 aa19.24■□□□□ 0.67
CDH1-213ENST00000612417 CGNL1Q0VF96 1302 aa19.24■□□□□ 0.67
CDH1-213ENST00000612417 TRMT2AQ8IZ69 625 aaKnown RBP19.24■□□□□ 0.67
CDH1-213ENST00000612417 NGEFQ8N5V2 710 aa19.24■□□□□ 0.67
CDH1-213ENST00000612417 TERF2IPQ9NYB0 399 aa19.24■□□□□ 0.67
CDH1-213ENST00000612417 TBX22Q9Y458 520 aa19.24■□□□□ 0.67
CDH1-213ENST00000612417 CPS1P31327 1500 aa19.23■□□□□ 0.67
CDH1-213ENST00000612417 MED14O60244 1454 aa19.23■□□□□ 0.67
CDH1-213ENST00000612417 MORC1Q86VD1 984 aa19.23■□□□□ 0.67
CDH1-213ENST00000612417 ROBO2Q9HCK4 1378 aa19.22■□□□□ 0.67
CDH1-213ENST00000612417 WASLO00401 505 aaPredicted RBP19.22■□□□□ 0.67
CDH1-213ENST00000612417 SLFN5Q08AF3 891 aa19.22■□□□□ 0.67
CDH1-213ENST00000612417 ANKLE2Q86XL3 938 aa19.21■□□□□ 0.67
CDH1-213ENST00000612417 CABP1Q9NZU7 370 aa19.21■□□□□ 0.67
CDH1-213ENST00000612417 AMOTL2Q9Y2J4 779 aa19.21■□□□□ 0.67
CDH1-213ENST00000612417 POLR3AO14802 1390 aaPredicted RBP19.21■□□□□ 0.67
CDH1-213ENST00000612417 HDGFL2Q7Z4V5 671 aaPredicted RBP19.21■□□□□ 0.67
CDH1-213ENST00000612417 A0A1W2PP64 1363 aa19.21■□□□□ 0.67
CDH1-213ENST00000612417 ZNF142P52746 1687 aaPredicted RBP19.2■□□□□ 0.66
CDH1-213ENST00000612417 TNNT2P45379 298 aaPredicted RBP19.2■□□□□ 0.66
CDH1-213ENST00000612417 PTPRUQ92729 1446 aa19.19■□□□□ 0.66
CDH1-213ENST00000612417 SHPRHQ149N8 1683 aa19.19■□□□□ 0.66
CDH1-213ENST00000612417 NKTRP30414 1462 aaKnown RBP19.19■□□□□ 0.66
CDH1-213ENST00000612417 PAK3O75914 559 aaPredicted RBP19.19■□□□□ 0.66
CDH1-213ENST00000612417 BACH2Q9BYV9 841 aa19.19■□□□□ 0.66
CDH1-213ENST00000612417 PDE4AP27815 886 aa19.18■□□□□ 0.66
CDH1-213ENST00000612417 KDM2BQ8NHM5 1336 aa19.18■□□□□ 0.66
CDH1-213ENST00000612417 DIP2AQ14689 1571 aa19.18■□□□□ 0.66
CDH1-213ENST00000612417 C20orf194Q5TEA3 1177 aa19.18■□□□□ 0.66
CDH1-213ENST00000612417 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.18■□□□□ 0.66
CDH1-213ENST00000612417 NUDT16Q96DE0 195 aaKnown RBP19.16■□□□□ 0.66
CDH1-213ENST00000612417 APAF1O14727 1248 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms