RNA–Protein interactions for RNA: ENST00000612369.4

VCX3A-203, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 812 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-203ENST00000612369 DHX57Q6P158 1386 aaKnown RBP26.64■■□□□ 1.86
VCX3A-203ENST00000612369 CFAP70Q5T0N1 1121 aa26.64■■□□□ 1.86
VCX3A-203ENST00000612369 LRRC59Q96AG4 307 aaKnown RBP26.64■■□□□ 1.86
VCX3A-203ENST00000612369 WAPLQ7Z5K2 1190 aa26.63■■□□□ 1.85
VCX3A-203ENST00000612369 DCAF11Q8TEB1 546 aa26.6■■□□□ 1.85
VCX3A-203ENST00000612369 ORAI2Q96SN7 254 aa26.59■■□□□ 1.85
VCX3A-203ENST00000612369 PLEKHH1Q9ULM0 1364 aa26.57■■□□□ 1.84
VCX3A-203ENST00000612369 DDX17Q92841 729 aaKnown RBP26.56■■□□□ 1.84
VCX3A-203ENST00000612369 KDM2AQ9Y2K7 1162 aa26.56■■□□□ 1.84
VCX3A-203ENST00000612369 LRP6O75581 1613 aa26.55■■□□□ 1.84
VCX3A-203ENST00000612369 MEX3CQ5U5Q3 659 aaKnown RBP26.54■■□□□ 1.84
VCX3A-203ENST00000612369 SOS2Q07890 1332 aaPredicted RBP26.54■■□□□ 1.84
VCX3A-203ENST00000612369 ESCO1Q5FWF5 840 aa26.53■■□□□ 1.84
VCX3A-203ENST00000612369 DLC1Q96QB1 1528 aa26.53■■□□□ 1.84
VCX3A-203ENST00000612369 ADGRB1O14514 1584 aa26.51■■□□□ 1.83
VCX3A-203ENST00000612369 POTEAQ6S8J7 498 aa26.51■■□□□ 1.83
VCX3A-203ENST00000612369 PNPLA6Q8IY17 1366 aa26.5■■□□□ 1.83
VCX3A-203ENST00000612369 NPHP3Q7Z494 1330 aa26.5■■□□□ 1.83
VCX3A-203ENST00000612369 PRAM1Q96QH2 718 aa26.49■■□□□ 1.83
VCX3A-203ENST00000612369 FMN2Q9NZ56 1722 aa26.48■■□□□ 1.83
VCX3A-203ENST00000612369 NUTM2BA6NNL0 878 aaPredicted RBP26.48■■□□□ 1.83
VCX3A-203ENST00000612369 NUTM2EB1AL46 878 aaPredicted RBP26.48■■□□□ 1.83
VCX3A-203ENST00000612369 NUTM2AQ8IVF1 878 aaPredicted RBP26.48■■□□□ 1.83
VCX3A-203ENST00000612369 POGKQ9P215 609 aa26.48■■□□□ 1.83
VCX3A-203ENST00000612369 ZNF772Q68DY9 489 aaPredicted RBP26.47■■□□□ 1.83
VCX3A-203ENST00000612369 NUTM2FA1L443 756 aa26.45■■□□□ 1.82
VCX3A-203ENST00000612369 TRAK1Q9UPV9 953 aa26.44■■□□□ 1.82
VCX3A-203ENST00000612369 FOXO3O43524 673 aa26.43■■□□□ 1.82
VCX3A-203ENST00000612369 SAFB2Q14151 953 aaKnown RBP eCLIP26.42■■□□□ 1.82
VCX3A-203ENST00000612369 PXDNQ92626 1479 aa26.41■■□□□ 1.82
VCX3A-203ENST00000612369 KIF1AQ12756 1690 aa26.41■■□□□ 1.82
VCX3A-203ENST00000612369 ADGRB2O60241 1585 aa26.39■■□□□ 1.82
VCX3A-203ENST00000612369 KIAA1210Q9ULL0 1709 aa26.37■■□□□ 1.81
VCX3A-203ENST00000612369 COL22A1Q8NFW1 1626 aaPredicted RBP26.37■■□□□ 1.81
VCX3A-203ENST00000612369 PHF8Q9UPP1 1060 aa26.36■■□□□ 1.81
VCX3A-203ENST00000612369 ANKARQ7Z5J8 1434 aa26.36■■□□□ 1.81
VCX3A-203ENST00000612369 EIF3AQ14152 1382 aaKnown RBP26.35■■□□□ 1.81
VCX3A-203ENST00000612369 AFF2P51816 1311 aa26.35■■□□□ 1.81
VCX3A-203ENST00000612369 RGPD8O14715 1765 aaPredicted RBP26.33■■□□□ 1.81
VCX3A-203ENST00000612369 XPCQ01831 940 aaPredicted RBP26.33■■□□□ 1.81
VCX3A-203ENST00000612369 C8orf37Q96NL8 207 aa26.33■■□□□ 1.81
VCX3A-203ENST00000612369 KRT28Q7Z3Y7 464 aa26.32■■□□□ 1.8
VCX3A-203ENST00000612369 MINK1Q8N4C8 1332 aaPredicted RBP26.32■■□□□ 1.8
VCX3A-203ENST00000612369 ADAMTS2O95450 1211 aa26.31■■□□□ 1.8
VCX3A-203ENST00000612369 PSME1Q06323 249 aa26.31■■□□□ 1.8
VCX3A-203ENST00000612369 WASLO00401 505 aaPredicted RBP26.3■■□□□ 1.8
VCX3A-203ENST00000612369 NGLY1Q96IV0 654 aa26.3■■□□□ 1.8
VCX3A-203ENST00000612369 HIRIP3Q9BW71 556 aaPredicted RBP26.3■■□□□ 1.8
VCX3A-203ENST00000612369 SPATA31A3Q5VYP0 1347 aa26.3■■□□□ 1.8
VCX3A-203ENST00000612369 ARHGEF28Q8N1W1 1705 aaKnown RBP26.3■■□□□ 1.8
VCX3A-203ENST00000612369 RXRBP28702 533 aa26.29■■□□□ 1.8
VCX3A-203ENST00000612369 USP32Q8NFA0 1604 aa26.28■■□□□ 1.8
VCX3A-203ENST00000612369 L3MBTL2Q969R5 705 aa26.27■■□□□ 1.8
VCX3A-203ENST00000612369 TULP4Q9NRJ4 1543 aa26.26■■□□□ 1.79
VCX3A-203ENST00000612369 SIN3AQ96ST3 1273 aa26.26■■□□□ 1.79
VCX3A-203ENST00000612369 SBNO1A3KN83 1393 aa26.24■■□□□ 1.79
VCX3A-203ENST00000612369 TRIM26Q12899 539 aaPredicted RBP26.24■■□□□ 1.79
VCX3A-203ENST00000612369 NBPF1Q3BBV0 1214 aa26.24■■□□□ 1.79
VCX3A-203ENST00000612369 FNBP4Q8N3X1 1017 aaPredicted RBP26.24■■□□□ 1.79
VCX3A-203ENST00000612369 QTRT2Q9H974 415 aaKnown RBP26.24■■□□□ 1.79
VCX3A-203ENST00000612369 CDK12Q9NYV4 1490 aaPredicted RBP26.23■■□□□ 1.79
VCX3A-203ENST00000612369 TNS3Q68CZ2 1445 aa26.23■■□□□ 1.79
VCX3A-203ENST00000612369 PMFBP1Q8TBY8 1022 aa26.23■■□□□ 1.79
VCX3A-203ENST00000612369 PRR36Q9H6K5 1346 aa26.22■■□□□ 1.79
VCX3A-203ENST00000612369 RBM6P78332 1123 aaKnown RBP26.21■■□□□ 1.79
VCX3A-203ENST00000612369 NEUROD1Q13562 356 aa26.21■■□□□ 1.79
VCX3A-203ENST00000612369 USP21Q9UK80 565 aa26.21■■□□□ 1.79
VCX3A-203ENST00000612369 ARHGEF10O15013 1369 aa26.2■■□□□ 1.78
VCX3A-203ENST00000612369 MARF1Q9Y4F3 1742 aaKnown RBP26.19■■□□□ 1.78
VCX3A-203ENST00000612369 GPRASP1Q5JY77 1395 aa26.19■■□□□ 1.78
VCX3A-203ENST00000612369 NUDT16Q96DE0 195 aaKnown RBP26.17■■□□□ 1.78
VCX3A-203ENST00000612369 CDK19Q9BWU1 502 aa26.17■■□□□ 1.78
VCX3A-203ENST00000612369 TRPC5Q9UL62 973 aaPredicted RBP26.17■■□□□ 1.78
VCX3A-203ENST00000612369 ITSN1Q15811 1721 aa26.16■■□□□ 1.78
VCX3A-203ENST00000612369 NGDNQ8NEJ9 315 aaKnown RBP26.15■■□□□ 1.78
VCX3A-203ENST00000612369 ATP7BP35670 1465 aa26.15■■□□□ 1.78
VCX3A-203ENST00000612369 CENPJQ9HC77 1338 aaPredicted RBP26.14■■□□□ 1.78
VCX3A-203ENST00000612369 HAP1P54257 671 aaPredicted RBP26.13■■□□□ 1.77
VCX3A-203ENST00000612369 LMOD2Q6P5Q4 547 aa26.13■■□□□ 1.77
VCX3A-203ENST00000612369 TRPM3Q9HCF6 1732 aaPredicted RBP26.11■■□□□ 1.77
VCX3A-203ENST00000612369 TRPM1Q7Z4N2 1603 aa26.11■■□□□ 1.77
VCX3A-203ENST00000612369 CCDC61Q9Y6R9 512 aa26.11■■□□□ 1.77
VCX3A-203ENST00000612369 ATRNO75882 1429 aa26.11■■□□□ 1.77
VCX3A-203ENST00000612369 BCL9LQ86UU0 1499 aa26.11■■□□□ 1.77
VCX3A-203ENST00000612369 CABLES1Q8TDN4 633 aa26.08■■□□□ 1.77
VCX3A-203ENST00000612369 SLIT2O94813 1529 aa26.08■■□□□ 1.77
VCX3A-203ENST00000612369 RGS12O14924 1447 aa26.07■■□□□ 1.76
VCX3A-203ENST00000612369 ALS2Q96Q42 1657 aa26.07■■□□□ 1.76
VCX3A-203ENST00000612369 ROCK2O75116 1388 aaKnown RBP26.07■■□□□ 1.76
VCX3A-203ENST00000612369 PLEKHG3A1L390 1219 aa26.06■■□□□ 1.76
VCX3A-203ENST00000612369 UNC5CLQ8IV45 518 aa26.06■■□□□ 1.76
VCX3A-203ENST00000612369 POLR3AO14802 1390 aaPredicted RBP26.06■■□□□ 1.76
VCX3A-203ENST00000612369 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.05■■□□□ 1.76
VCX3A-203ENST00000612369 TOPAZ1Q8N9V7 1692 aa26.05■■□□□ 1.76
VCX3A-203ENST00000612369 ABCA3Q99758 1704 aa26.05■■□□□ 1.76
VCX3A-203ENST00000612369 QRICH2Q9H0J4 1663 aa26.04■■□□□ 1.76
VCX3A-203ENST00000612369 SRPK2P78362 688 aaKnown RBP26.04■■□□□ 1.76
VCX3A-203ENST00000612369 PAK3O75914 559 aaPredicted RBP26.03■■□□□ 1.76
VCX3A-203ENST00000612369 NBPF8Q3BBV2 869 aa26.02■■□□□ 1.76
VCX3A-203ENST00000612369 UPF1Q92900 1129 aaKnown RBP eCLIP26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms