RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 ROBO1Q9Y6N7 1651 aa28.83■■■□□ 2.21
SSBP4-210ENST00000601444 KIAA1210Q9ULL0 1709 aa28.83■■■□□ 2.21
SSBP4-210ENST00000601444 CCER1Q8TC90 406 aaPredicted RBP28.82■■■□□ 2.2
SSBP4-210ENST00000601444 MST1RQ04912 1400 aa28.82■■■□□ 2.2
SSBP4-210ENST00000601444 DLC1Q96QB1 1528 aa28.82■■■□□ 2.2
SSBP4-210ENST00000601444 POGKQ9P215 609 aa28.81■■■□□ 2.2
SSBP4-210ENST00000601444 CLSPNQ9HAW4 1339 aa28.77■■■□□ 2.2
SSBP4-210ENST00000601444 BRINP3Q76B58 766 aa28.76■■■□□ 2.19
SSBP4-210ENST00000601444 TRPM1Q7Z4N2 1603 aa28.76■■■□□ 2.19
SSBP4-210ENST00000601444 C1orf167Q5SNV9 1468 aa28.74■■■□□ 2.19
SSBP4-210ENST00000601444 NUTM2FA1L443 756 aa28.74■■■□□ 2.19
SSBP4-210ENST00000601444 CDC42BPGQ6DT37 1551 aa28.73■■■□□ 2.19
SSBP4-210ENST00000601444 HIRIP3Q9BW71 556 aaPredicted RBP28.73■■■□□ 2.19
SSBP4-210ENST00000601444 MINK1Q8N4C8 1332 aaPredicted RBP28.72■■■□□ 2.19
SSBP4-210ENST00000601444 ORAI2Q96SN7 254 aa28.72■■■□□ 2.19
SSBP4-210ENST00000601444 ARHGEF28Q8N1W1 1705 aaKnown RBP28.72■■■□□ 2.19
SSBP4-210ENST00000601444 ROCK2O75116 1388 aaKnown RBP28.71■■■□□ 2.19
SSBP4-210ENST00000601444 DDX17Q92841 729 aaKnown RBP28.68■■■□□ 2.18
SSBP4-210ENST00000601444 ESCO1Q5FWF5 840 aa28.64■■■□□ 2.18
SSBP4-210ENST00000601444 FMN2Q9NZ56 1722 aa28.63■■■□□ 2.17
SSBP4-210ENST00000601444 PHLPP1O60346 1717 aa28.63■■■□□ 2.17
SSBP4-210ENST00000601444 GPRASP1Q5JY77 1395 aa28.62■■■□□ 2.17
SSBP4-210ENST00000601444 ADGRB2O60241 1585 aa28.62■■■□□ 2.17
SSBP4-210ENST00000601444 RALGAPBQ86X10 1494 aa28.61■■■□□ 2.17
SSBP4-210ENST00000601444 TIMELESSQ9UNS1 1208 aa28.61■■■□□ 2.17
SSBP4-210ENST00000601444 AHDC1Q5TGY3 1603 aaPredicted RBP28.61■■■□□ 2.17
SSBP4-210ENST00000601444 WASLO00401 505 aaPredicted RBP28.6■■■□□ 2.17
SSBP4-210ENST00000601444 CARD11Q9BXL7 1154 aa28.6■■■□□ 2.17
SSBP4-210ENST00000601444 CENPJQ9HC77 1338 aaPredicted RBP28.6■■■□□ 2.17
SSBP4-210ENST00000601444 COL16A1Q07092 1604 aaPredicted RBP28.58■■■□□ 2.17
SSBP4-210ENST00000601444 NHSL1Q5SYE7 1610 aa28.56■■■□□ 2.16
SSBP4-210ENST00000601444 PRR36Q9H6K5 1346 aa28.56■■■□□ 2.16
SSBP4-210ENST00000601444 CDK19Q9BWU1 502 aa28.55■■■□□ 2.16
SSBP4-210ENST00000601444 USP32Q8NFA0 1604 aa28.54■■■□□ 2.16
SSBP4-210ENST00000601444 FOXO3O43524 673 aa28.54■■■□□ 2.16
SSBP4-210ENST00000601444 RGPD8O14715 1765 aaPredicted RBP28.53■■■□□ 2.16
SSBP4-210ENST00000601444 XPCQ01831 940 aaPredicted RBP28.51■■■□□ 2.15
SSBP4-210ENST00000601444 QRICH2Q9H0J4 1663 aa28.51■■■□□ 2.15
SSBP4-210ENST00000601444 ANKARQ7Z5J8 1434 aa28.51■■■□□ 2.15
SSBP4-210ENST00000601444 TULP4Q9NRJ4 1543 aa28.5■■■□□ 2.15
SSBP4-210ENST00000601444 PMFBP1Q8TBY8 1022 aa28.5■■■□□ 2.15
SSBP4-210ENST00000601444 PHF8Q9UPP1 1060 aa28.5■■■□□ 2.15
SSBP4-210ENST00000601444 SOS2Q07890 1332 aaPredicted RBP28.49■■■□□ 2.15
SSBP4-210ENST00000601444 EIF3AQ14152 1382 aaKnown RBP28.49■■■□□ 2.15
SSBP4-210ENST00000601444 NUDT16Q96DE0 195 aaKnown RBP28.48■■■□□ 2.15
SSBP4-210ENST00000601444 JCADQ9P266 1359 aa28.48■■■□□ 2.15
SSBP4-210ENST00000601444 NPHP3Q7Z494 1330 aa28.46■■■□□ 2.15
SSBP4-210ENST00000601444 LRRC59Q96AG4 307 aaKnown RBP28.46■■■□□ 2.15
SSBP4-210ENST00000601444 CABP2Q9NPB3 220 aa28.46■■■□□ 2.15
SSBP4-210ENST00000601444 ATP7BP35670 1465 aa28.45■■■□□ 2.14
SSBP4-210ENST00000601444 SRPK2P78362 688 aaKnown RBP28.44■■■□□ 2.14
SSBP4-210ENST00000601444 PXDNQ92626 1479 aa28.44■■■□□ 2.14
SSBP4-210ENST00000601444 KIF1AQ12756 1690 aa28.42■■■□□ 2.14
SSBP4-210ENST00000601444 KRT28Q7Z3Y7 464 aa28.42■■■□□ 2.14
SSBP4-210ENST00000601444 MED1Q15648 1581 aaPredicted RBP28.41■■■□□ 2.14
SSBP4-210ENST00000601444 ST20-MTHFSA0A0A6YYL1 179 aa28.39■■■□□ 2.14
SSBP4-210ENST00000601444 EVC2Q86UK5 1308 aa28.39■■■□□ 2.13
SSBP4-210ENST00000601444 CCDC61Q9Y6R9 512 aa28.38■■■□□ 2.13
SSBP4-210ENST00000601444 PNPLA6Q8IY17 1366 aa28.37■■■□□ 2.13
SSBP4-210ENST00000601444 PSME1Q06323 249 aa28.37■■■□□ 2.13
SSBP4-210ENST00000601444 SHPRHQ149N8 1683 aa28.37■■■□□ 2.13
SSBP4-210ENST00000601444 DISP3Q9P2K9 1392 aa28.36■■■□□ 2.13
SSBP4-210ENST00000601444 NGDNQ8NEJ9 315 aaKnown RBP28.35■■■□□ 2.13
SSBP4-210ENST00000601444 SPATA31A6Q5VVP1 1343 aa28.35■■■□□ 2.13
SSBP4-210ENST00000601444 USP47Q96K76 1375 aa28.35■■■□□ 2.13
SSBP4-210ENST00000601444 SBNO2Q9Y2G9 1366 aa28.35■■■□□ 2.13
SSBP4-210ENST00000601444 NUTM2BA6NNL0 878 aaPredicted RBP28.34■■■□□ 2.13
SSBP4-210ENST00000601444 NUTM2EB1AL46 878 aaPredicted RBP28.34■■■□□ 2.13
SSBP4-210ENST00000601444 NUTM2AQ8IVF1 878 aaPredicted RBP28.34■■■□□ 2.13
SSBP4-210ENST00000601444 TESK2Q96S53 571 aa28.33■■■□□ 2.13
SSBP4-210ENST00000601444 LRP6O75581 1613 aa28.32■■■□□ 2.12
SSBP4-210ENST00000601444 TOPAZ1Q8N9V7 1692 aa28.32■■■□□ 2.12
SSBP4-210ENST00000601444 PLEKHG3A1L390 1219 aa28.32■■■□□ 2.12
SSBP4-210ENST00000601444 SPATA31A3Q5VYP0 1347 aa28.32■■■□□ 2.12
SSBP4-210ENST00000601444 ACEP12821 1306 aa28.31■■■□□ 2.12
SSBP4-210ENST00000601444 PPIP5K1Q6PFW1 1433 aa28.31■■■□□ 2.12
SSBP4-210ENST00000601444 ITSN1Q15811 1721 aa28.31■■■□□ 2.12
SSBP4-210ENST00000601444 CABP1Q9NZU7 370 aa28.3■■■□□ 2.12
SSBP4-210ENST00000601444 POLR3AO14802 1390 aaPredicted RBP28.27■■■□□ 2.12
SSBP4-210ENST00000601444 SBNO1A3KN83 1393 aa28.26■■■□□ 2.12
SSBP4-210ENST00000601444 TNS3Q68CZ2 1445 aa28.26■■■□□ 2.11
SSBP4-210ENST00000601444 LMOD2Q6P5Q4 547 aa28.25■■■□□ 2.11
SSBP4-210ENST00000601444 PLEKHG5O94827 1062 aa28.24■■■□□ 2.11
SSBP4-210ENST00000601444 PHF23Q9BUL5 403 aaPredicted RBP28.24■■■□□ 2.11
SSBP4-210ENST00000601444 TRPM3Q9HCF6 1732 aaPredicted RBP28.23■■■□□ 2.11
SSBP4-210ENST00000601444 PAK3O75914 559 aaPredicted RBP28.23■■■□□ 2.11
SSBP4-210ENST00000601444 COL22A1Q8NFW1 1626 aaPredicted RBP28.22■■■□□ 2.11
SSBP4-210ENST00000601444 MEX3CQ5U5Q3 659 aaKnown RBP28.22■■■□□ 2.11
SSBP4-210ENST00000601444 RGS17Q9UGC6 210 aaPredicted RBP28.22■■■□□ 2.11
SSBP4-210ENST00000601444 ADAMTS2O95450 1211 aa28.21■■■□□ 2.11
SSBP4-210ENST00000601444 ATAD2Q6PL18 1390 aa28.21■■■□□ 2.11
SSBP4-210ENST00000601444 CABLES1Q8TDN4 633 aa28.2■■■□□ 2.1
SSBP4-210ENST00000601444 ARHGEF10O15013 1369 aa28.16■■■□□ 2.1
SSBP4-210ENST00000601444 HSPA5P11021 654 aaKnown RBP28.16■■■□□ 2.1
SSBP4-210ENST00000601444 SLC12A5Q9H2X9 1139 aa28.16■■■□□ 2.1
SSBP4-210ENST00000601444 TMF1P82094 1093 aa28.15■■■□□ 2.1
SSBP4-210ENST00000601444 TMC1Q8TDI8 760 aa28.15■■■□□ 2.1
SSBP4-210ENST00000601444 ALS2Q96Q42 1657 aa28.15■■■□□ 2.1
SSBP4-210ENST00000601444 SLC24A1O60721 1099 aa28.14■■■□□ 2.1
SSBP4-210ENST00000601444 EIF4G2P78344 907 aaKnown RBP eCLIP28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms