RNA–Protein interactions for RNA: ENST00000597209.1

CHMP2A-203, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 2

Gene CHMP2A, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-203ENST00000597209 LRP6O75581 1613 aa26.32■■□□□ 1.8
CHMP2A-203ENST00000597209 CFAP70Q5T0N1 1121 aa26.31■■□□□ 1.8
CHMP2A-203ENST00000597209 WAPLQ7Z5K2 1190 aa26.31■■□□□ 1.8
CHMP2A-203ENST00000597209 STAC3Q96MF2 364 aa26.31■■□□□ 1.8
CHMP2A-203ENST00000597209 ORAI2Q96SN7 254 aa26.3■■□□□ 1.8
CHMP2A-203ENST00000597209 DHX57Q6P158 1386 aaKnown RBP26.3■■□□□ 1.8
CHMP2A-203ENST00000597209 POTEAQ6S8J7 498 aa26.28■■□□□ 1.8
CHMP2A-203ENST00000597209 DDX17Q92841 729 aaKnown RBP26.28■■□□□ 1.8
CHMP2A-203ENST00000597209 PLEKHH1Q9ULM0 1364 aa26.27■■□□□ 1.8
CHMP2A-203ENST00000597209 SOS2Q07890 1332 aaPredicted RBP26.26■■□□□ 1.79
CHMP2A-203ENST00000597209 MEX3CQ5U5Q3 659 aaKnown RBP26.24■■□□□ 1.79
CHMP2A-203ENST00000597209 PNPLA6Q8IY17 1366 aa26.23■■□□□ 1.79
CHMP2A-203ENST00000597209 DCAF11Q8TEB1 546 aa26.23■■□□□ 1.79
CHMP2A-203ENST00000597209 DLC1Q96QB1 1528 aa26.22■■□□□ 1.79
CHMP2A-203ENST00000597209 ESCO1Q5FWF5 840 aa26.21■■□□□ 1.79
CHMP2A-203ENST00000597209 ADGRB1O14514 1584 aa26.2■■□□□ 1.79
CHMP2A-203ENST00000597209 ZNF772Q68DY9 489 aaPredicted RBP26.2■■□□□ 1.78
CHMP2A-203ENST00000597209 FMN2Q9NZ56 1722 aa26.19■■□□□ 1.78
CHMP2A-203ENST00000597209 NPHP3Q7Z494 1330 aa26.19■■□□□ 1.78
CHMP2A-203ENST00000597209 NUTM2BA6NNL0 878 aaPredicted RBP26.19■■□□□ 1.78
CHMP2A-203ENST00000597209 NUTM2EB1AL46 878 aaPredicted RBP26.19■■□□□ 1.78
CHMP2A-203ENST00000597209 NUTM2AQ8IVF1 878 aaPredicted RBP26.19■■□□□ 1.78
CHMP2A-203ENST00000597209 KDM2AQ9Y2K7 1162 aa26.19■■□□□ 1.78
CHMP2A-203ENST00000597209 PRAM1Q96QH2 718 aa26.16■■□□□ 1.78
CHMP2A-203ENST00000597209 PXDNQ92626 1479 aa26.14■■□□□ 1.78
CHMP2A-203ENST00000597209 NUTM2FA1L443 756 aa26.13■■□□□ 1.77
CHMP2A-203ENST00000597209 FOXO3O43524 673 aa26.12■■□□□ 1.77
CHMP2A-203ENST00000597209 POGKQ9P215 609 aa26.12■■□□□ 1.77
CHMP2A-203ENST00000597209 KIF1AQ12756 1690 aa26.12■■□□□ 1.77
CHMP2A-203ENST00000597209 COL22A1Q8NFW1 1626 aaPredicted RBP26.11■■□□□ 1.77
CHMP2A-203ENST00000597209 ADGRB2O60241 1585 aa26.09■■□□□ 1.77
CHMP2A-203ENST00000597209 TRAK1Q9UPV9 953 aa26.09■■□□□ 1.77
CHMP2A-203ENST00000597209 AFF2P51816 1311 aa26.08■■□□□ 1.77
CHMP2A-203ENST00000597209 SAFB2Q14151 953 aaKnown RBP eCLIP26.07■■□□□ 1.76
CHMP2A-203ENST00000597209 ANKARQ7Z5J8 1434 aa26.05■■□□□ 1.76
CHMP2A-203ENST00000597209 C8orf37Q96NL8 207 aa26.05■■□□□ 1.76
CHMP2A-203ENST00000597209 PHF8Q9UPP1 1060 aa26.04■■□□□ 1.76
CHMP2A-203ENST00000597209 RGPD8O14715 1765 aaPredicted RBP26.04■■□□□ 1.76
CHMP2A-203ENST00000597209 KIAA1210Q9ULL0 1709 aa26.03■■□□□ 1.76
CHMP2A-203ENST00000597209 RXRBP28702 533 aa26.03■■□□□ 1.76
CHMP2A-203ENST00000597209 XPCQ01831 940 aaPredicted RBP26.03■■□□□ 1.76
CHMP2A-203ENST00000597209 ADAMTS2O95450 1211 aa26.01■■□□□ 1.75
CHMP2A-203ENST00000597209 SPATA31A3Q5VYP0 1347 aa26.01■■□□□ 1.75
CHMP2A-203ENST00000597209 KRT28Q7Z3Y7 464 aa26.01■■□□□ 1.75
CHMP2A-203ENST00000597209 CDK12Q9NYV4 1490 aaPredicted RBP26■■□□□ 1.75
CHMP2A-203ENST00000597209 EIF3AQ14152 1382 aaKnown RBP26■■□□□ 1.75
CHMP2A-203ENST00000597209 NGLY1Q96IV0 654 aa26■■□□□ 1.75
CHMP2A-203ENST00000597209 USP32Q8NFA0 1604 aa25.99■■□□□ 1.75
CHMP2A-203ENST00000597209 PSME1Q06323 249 aa25.99■■□□□ 1.75
CHMP2A-203ENST00000597209 ARHGEF28Q8N1W1 1705 aaKnown RBP25.99■■□□□ 1.75
CHMP2A-203ENST00000597209 MINK1Q8N4C8 1332 aaPredicted RBP25.97■■□□□ 1.75
CHMP2A-203ENST00000597209 WASLO00401 505 aaPredicted RBP25.97■■□□□ 1.75
CHMP2A-203ENST00000597209 FNBP4Q8N3X1 1017 aaPredicted RBP25.97■■□□□ 1.75
CHMP2A-203ENST00000597209 HIRIP3Q9BW71 556 aaPredicted RBP25.97■■□□□ 1.75
CHMP2A-203ENST00000597209 QTRT2Q9H974 415 aaKnown RBP25.97■■□□□ 1.75
CHMP2A-203ENST00000597209 SBNO1A3KN83 1393 aa25.95■■□□□ 1.75
CHMP2A-203ENST00000597209 TULP4Q9NRJ4 1543 aa25.95■■□□□ 1.74
CHMP2A-203ENST00000597209 RBM6P78332 1123 aaKnown RBP25.94■■□□□ 1.74
CHMP2A-203ENST00000597209 TNS3Q68CZ2 1445 aa25.94■■□□□ 1.74
CHMP2A-203ENST00000597209 MARF1Q9Y4F3 1742 aaKnown RBP25.94■■□□□ 1.74
CHMP2A-203ENST00000597209 USP21Q9UK80 565 aa25.92■■□□□ 1.74
CHMP2A-203ENST00000597209 PRR36Q9H6K5 1346 aa25.91■■□□□ 1.74
CHMP2A-203ENST00000597209 PMFBP1Q8TBY8 1022 aa25.91■■□□□ 1.74
CHMP2A-203ENST00000597209 NBPF1Q3BBV0 1214 aa25.9■■□□□ 1.74
CHMP2A-203ENST00000597209 L3MBTL2Q969R5 705 aa25.9■■□□□ 1.74
CHMP2A-203ENST00000597209 TRPC5Q9UL62 973 aaPredicted RBP25.89■■□□□ 1.74
CHMP2A-203ENST00000597209 ARHGEF10O15013 1369 aa25.88■■□□□ 1.73
CHMP2A-203ENST00000597209 SIN3AQ96ST3 1273 aa25.87■■□□□ 1.73
CHMP2A-203ENST00000597209 ATRNO75882 1429 aa25.87■■□□□ 1.73
CHMP2A-203ENST00000597209 BCL9LQ86UU0 1499 aa25.85■■□□□ 1.73
CHMP2A-203ENST00000597209 GPRASP1Q5JY77 1395 aa25.85■■□□□ 1.73
CHMP2A-203ENST00000597209 RGS12O14924 1447 aa25.84■■□□□ 1.73
CHMP2A-203ENST00000597209 TRPM3Q9HCF6 1732 aaPredicted RBP25.84■■□□□ 1.73
CHMP2A-203ENST00000597209 ATP7BP35670 1465 aa25.84■■□□□ 1.73
CHMP2A-203ENST00000597209 ITSN1Q15811 1721 aa25.83■■□□□ 1.73
CHMP2A-203ENST00000597209 NUDT16Q96DE0 195 aaKnown RBP25.83■■□□□ 1.73
CHMP2A-203ENST00000597209 CDK19Q9BWU1 502 aa25.83■■□□□ 1.73
CHMP2A-203ENST00000597209 SLIT2O94813 1529 aa25.82■■□□□ 1.72
CHMP2A-203ENST00000597209 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.8■■□□□ 1.72
CHMP2A-203ENST00000597209 NEUROD1Q13562 356 aa25.8■■□□□ 1.72
CHMP2A-203ENST00000597209 LMOD2Q6P5Q4 547 aa25.8■■□□□ 1.72
CHMP2A-203ENST00000597209 NGDNQ8NEJ9 315 aaKnown RBP25.8■■□□□ 1.72
CHMP2A-203ENST00000597209 UPF1Q92900 1129 aaKnown RBP eCLIP25.8■■□□□ 1.72
CHMP2A-203ENST00000597209 ALS2Q96Q42 1657 aa25.8■■□□□ 1.72
CHMP2A-203ENST00000597209 HAP1P54257 671 aaPredicted RBP25.79■■□□□ 1.72
CHMP2A-203ENST00000597209 CENPJQ9HC77 1338 aaPredicted RBP25.79■■□□□ 1.72
CHMP2A-203ENST00000597209 ABCA3Q99758 1704 aa25.79■■□□□ 1.72
CHMP2A-203ENST00000597209 UNC5CLQ8IV45 518 aa25.78■■□□□ 1.72
CHMP2A-203ENST00000597209 CABLES1Q8TDN4 633 aa25.78■■□□□ 1.72
CHMP2A-203ENST00000597209 TRPM1Q7Z4N2 1603 aa25.77■■□□□ 1.72
CHMP2A-203ENST00000597209 CCDC61Q9Y6R9 512 aa25.77■■□□□ 1.72
CHMP2A-203ENST00000597209 TOPAZ1Q8N9V7 1692 aa25.77■■□□□ 1.72
CHMP2A-203ENST00000597209 TRIM26Q12899 539 aaPredicted RBP25.76■■□□□ 1.71
CHMP2A-203ENST00000597209 POLR3AO14802 1390 aaPredicted RBP25.75■■□□□ 1.71
CHMP2A-203ENST00000597209 GJD4Q96KN9 370 aaPredicted RBP25.75■■□□□ 1.71
CHMP2A-203ENST00000597209 PLEKHG3A1L390 1219 aa25.74■■□□□ 1.71
CHMP2A-203ENST00000597209 NWD2Q9ULI1 1742 aa25.72■■□□□ 1.71
CHMP2A-203ENST00000597209 QRICH2Q9H0J4 1663 aa25.71■■□□□ 1.71
CHMP2A-203ENST00000597209 ACEP12821 1306 aa25.7■■□□□ 1.71
CHMP2A-203ENST00000597209 PLCH1Q4KWH8 1693 aa25.7■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms