RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ADGRL3Q9HAR2 1447 aa21.4■■□□□ 1.02
TRIM28-207ENST00000597136 SIRT1Q96EB6 747 aa21.4■■□□□ 1.02
TRIM28-207ENST00000597136 FAM135BQ49AJ0 1406 aa21.39■■□□□ 1.01
TRIM28-207ENST00000597136 SCAF1Q9H7N4 1312 aaKnown RBP21.38■■□□□ 1.01
TRIM28-207ENST00000597136 POGKQ9P215 609 aa21.36■■□□□ 1.01
TRIM28-207ENST00000597136 ROCK2O75116 1388 aaKnown RBP21.36■■□□□ 1.01
TRIM28-207ENST00000597136 ATF3P18847 181 aa21.36■■□□□ 1.01
TRIM28-207ENST00000597136 SLAIN2Q9P270 581 aa21.36■■□□□ 1.01
TRIM28-207ENST00000597136 ROBO1Q9Y6N7 1651 aa21.35■■□□□ 1.01
TRIM28-207ENST00000597136 CADPS2Q86UW7 1296 aa21.34■■□□□ 1.01
TRIM28-207ENST00000597136 RALGAPBQ86X10 1494 aa21.34■■□□□ 1.01
TRIM28-207ENST00000597136 QRICH2Q9H0J4 1663 aa21.33■■□□□ 1.01
TRIM28-207ENST00000597136 FMN2Q9NZ56 1722 aa21.33■■□□□ 1.01
TRIM28-207ENST00000597136 MINK1Q8N4C8 1332 aaPredicted RBP21.32■■□□□ 1
TRIM28-207ENST00000597136 DCCP43146 1447 aa21.32■■□□□ 1
TRIM28-207ENST00000597136 HIRIP3Q9BW71 556 aaPredicted RBP21.31■■□□□ 1
TRIM28-207ENST00000597136 CDC42BPGQ6DT37 1551 aa21.3■■□□□ 1
TRIM28-207ENST00000597136 GPRASP1Q5JY77 1395 aa21.3■■□□□ 1
TRIM28-207ENST00000597136 MST1RQ04912 1400 aa21.3■■□□□ 1
TRIM28-207ENST00000597136 NUTM2FA1L443 756 aa21.3■■□□□ 1
TRIM28-207ENST00000597136 CARD11Q9BXL7 1154 aa21.3■■□□□ 1
TRIM28-207ENST00000597136 ADGRB2O60241 1585 aa21.27■□□□□ 0.99
TRIM28-207ENST00000597136 USP32Q8NFA0 1604 aa21.26■□□□□ 0.99
TRIM28-207ENST00000597136 C1orf167Q5SNV9 1468 aa21.25■□□□□ 0.99
TRIM28-207ENST00000597136 CENPJQ9HC77 1338 aaPredicted RBP21.25■□□□□ 0.99
TRIM28-207ENST00000597136 ORAI2Q96SN7 254 aa21.25■□□□□ 0.99
TRIM28-207ENST00000597136 PHLPP1O60346 1717 aa21.24■□□□□ 0.99
TRIM28-207ENST00000597136 HSPA1LP34931 641 aa21.23■□□□□ 0.99
TRIM28-207ENST00000597136 BRINP3Q76B58 766 aa21.23■□□□□ 0.99
TRIM28-207ENST00000597136 WASLO00401 505 aaPredicted RBP21.21■□□□□ 0.99
TRIM28-207ENST00000597136 NHSL1Q5SYE7 1610 aa21.2■□□□□ 0.98
TRIM28-207ENST00000597136 DDX17Q92841 729 aaKnown RBP21.2■□□□□ 0.98
TRIM28-207ENST00000597136 ESCO1Q5FWF5 840 aa21.19■□□□□ 0.98
TRIM28-207ENST00000597136 CDK19Q9BWU1 502 aa21.19■□□□□ 0.98
TRIM28-207ENST00000597136 PRR36Q9H6K5 1346 aa21.17■□□□□ 0.98
TRIM28-207ENST00000597136 TULP4Q9NRJ4 1543 aa21.16■□□□□ 0.98
TRIM28-207ENST00000597136 ITSN1Q15811 1721 aa21.16■□□□□ 0.98
TRIM28-207ENST00000597136 EIF3AQ14152 1382 aaKnown RBP21.16■□□□□ 0.98
TRIM28-207ENST00000597136 ST20-MTHFSA0A0A6YYL1 179 aa21.15■□□□□ 0.98
TRIM28-207ENST00000597136 COL16A1Q07092 1604 aaPredicted RBP21.14■□□□□ 0.98
TRIM28-207ENST00000597136 AHDC1Q5TGY3 1603 aaPredicted RBP21.14■□□□□ 0.98
TRIM28-207ENST00000597136 USP47Q96K76 1375 aa21.13■□□□□ 0.97
TRIM28-207ENST00000597136 TOPAZ1Q8N9V7 1692 aa21.13■□□□□ 0.97
TRIM28-207ENST00000597136 NUDT16Q96DE0 195 aaKnown RBP21.13■□□□□ 0.97
TRIM28-207ENST00000597136 CABP2Q9NPB3 220 aa21.13■□□□□ 0.97
TRIM28-207ENST00000597136 KIF1AQ12756 1690 aa21.12■□□□□ 0.97
TRIM28-207ENST00000597136 FOXO3O43524 673 aa21.12■□□□□ 0.97
TRIM28-207ENST00000597136 ANKARQ7Z5J8 1434 aa21.11■□□□□ 0.97
TRIM28-207ENST00000597136 PMFBP1Q8TBY8 1022 aa21.11■□□□□ 0.97
TRIM28-207ENST00000597136 ATP7BP35670 1465 aa21.11■□□□□ 0.97
TRIM28-207ENST00000597136 TESK2Q96S53 571 aa21.1■□□□□ 0.97
TRIM28-207ENST00000597136 SRPK2P78362 688 aaKnown RBP21.1■□□□□ 0.97
TRIM28-207ENST00000597136 PHF8Q9UPP1 1060 aa21.1■□□□□ 0.97
TRIM28-207ENST00000597136 XPCQ01831 940 aaPredicted RBP21.09■□□□□ 0.97
TRIM28-207ENST00000597136 EVC2Q86UK5 1308 aa21.09■□□□□ 0.97
TRIM28-207ENST00000597136 SBNO2Q9Y2G9 1366 aa21.08■□□□□ 0.96
TRIM28-207ENST00000597136 PXDNQ92626 1479 aa21.04■□□□□ 0.96
TRIM28-207ENST00000597136 SOS2Q07890 1332 aaPredicted RBP21.04■□□□□ 0.96
TRIM28-207ENST00000597136 CCDC61Q9Y6R9 512 aa21.04■□□□□ 0.96
TRIM28-207ENST00000597136 HSPA5P11021 654 aaKnown RBP21.03■□□□□ 0.96
TRIM28-207ENST00000597136 TRPM3Q9HCF6 1732 aaPredicted RBP21.03■□□□□ 0.96
TRIM28-207ENST00000597136 SHPRHQ149N8 1683 aa21.02■□□□□ 0.96
TRIM28-207ENST00000597136 NPHP3Q7Z494 1330 aa21.02■□□□□ 0.96
TRIM28-207ENST00000597136 KRT28Q7Z3Y7 464 aa21.02■□□□□ 0.96
TRIM28-207ENST00000597136 AKAP12Q02952 1782 aa21.02■□□□□ 0.96
TRIM28-207ENST00000597136 EIF4G2P78344 907 aaKnown RBP eCLIP21.02■□□□□ 0.95
TRIM28-207ENST00000597136 PPIP5K1Q6PFW1 1433 aa21.01■□□□□ 0.95
TRIM28-207ENST00000597136 DISP3Q9P2K9 1392 aa21.01■□□□□ 0.95
TRIM28-207ENST00000597136 CABP1Q9NZU7 370 aa21.01■□□□□ 0.95
TRIM28-207ENST00000597136 PLEKHG3A1L390 1219 aa21■□□□□ 0.95
TRIM28-207ENST00000597136 PSME1Q06323 249 aa21■□□□□ 0.95
TRIM28-207ENST00000597136 NGDNQ8NEJ9 315 aaKnown RBP21■□□□□ 0.95
TRIM28-207ENST00000597136 ACEP12821 1306 aa20.99■□□□□ 0.95
TRIM28-207ENST00000597136 LRRC59Q96AG4 307 aaKnown RBP20.99■□□□□ 0.95
TRIM28-207ENST00000597136 JCADQ9P266 1359 aa20.97■□□□□ 0.95
TRIM28-207ENST00000597136 ALS2Q96Q42 1657 aa20.96■□□□□ 0.95
TRIM28-207ENST00000597136 POLR3AO14802 1390 aaPredicted RBP20.96■□□□□ 0.95
TRIM28-207ENST00000597136 TMF1P82094 1093 aa20.95■□□□□ 0.94
TRIM28-207ENST00000597136 SLC12A5Q9H2X9 1139 aa20.94■□□□□ 0.94
TRIM28-207ENST00000597136 ATAD2Q6PL18 1390 aa20.94■□□□□ 0.94
TRIM28-207ENST00000597136 PNPLA6Q8IY17 1366 aa20.94■□□□□ 0.94
TRIM28-207ENST00000597136 TMC1Q8TDI8 760 aa20.93■□□□□ 0.94
TRIM28-207ENST00000597136 SPATA31A3Q5VYP0 1347 aa20.93■□□□□ 0.94
TRIM28-207ENST00000597136 MON2Q7Z3U7 1717 aa20.93■□□□□ 0.94
TRIM28-207ENST00000597136 MYOM1P52179 1685 aa20.93■□□□□ 0.94
TRIM28-207ENST00000597136 COL22A1Q8NFW1 1626 aaPredicted RBP20.92■□□□□ 0.94
TRIM28-207ENST00000597136 C11orf95C9JLR9 678 aaPredicted RBP20.92■□□□□ 0.94
TRIM28-207ENST00000597136 SLC24A1O60721 1099 aa20.92■□□□□ 0.94
TRIM28-207ENST00000597136 PUS7Q96PZ0 661 aaKnown RBP20.92■□□□□ 0.94
TRIM28-207ENST00000597136 PAK3O75914 559 aaPredicted RBP20.9■□□□□ 0.94
TRIM28-207ENST00000597136 PLEKHG5O94827 1062 aa20.9■□□□□ 0.94
TRIM28-207ENST00000597136 LMOD2Q6P5Q4 547 aa20.9■□□□□ 0.94
TRIM28-207ENST00000597136 CD163L1Q9NR16 1453 aa20.9■□□□□ 0.94
TRIM28-207ENST00000597136 MARF1Q9Y4F3 1742 aaKnown RBP20.9■□□□□ 0.94
TRIM28-207ENST00000597136 MED1Q15648 1581 aaPredicted RBP20.9■□□□□ 0.94
TRIM28-207ENST00000597136 SBNO1A3KN83 1393 aa20.9■□□□□ 0.94
TRIM28-207ENST00000597136 ABCA3Q99758 1704 aa20.89■□□□□ 0.94
TRIM28-207ENST00000597136 NUTM2BA6NNL0 878 aaPredicted RBP20.89■□□□□ 0.94
TRIM28-207ENST00000597136 NUTM2EB1AL46 878 aaPredicted RBP20.89■□□□□ 0.94
TRIM28-207ENST00000597136 NUTM2AQ8IVF1 878 aaPredicted RBP20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms