RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 COL16A1Q07092 1604 aaPredicted RBP15.35■□□□□ 0.05
CCDC9-203ENST00000596938 DDX17Q92841 729 aaKnown RBP15.34■□□□□ 0.05
CCDC9-203ENST00000596938 PLEKHH1Q9ULM0 1364 aa15.33■□□□□ 0.04
CCDC9-203ENST00000596938 NALCNQ8IZF0 1738 aa15.32■□□□□ 0.04
CCDC9-203ENST00000596938 SOS2Q07890 1332 aaPredicted RBP15.32■□□□□ 0.04
CCDC9-203ENST00000596938 ESCO1Q5FWF5 840 aa15.31■□□□□ 0.04
CCDC9-203ENST00000596938 PRAM1Q96QH2 718 aa15.3■□□□□ 0.04
CCDC9-203ENST00000596938 POTEAQ6S8J7 498 aa15.29■□□□□ 0.04
CCDC9-203ENST00000596938 POGKQ9P215 609 aa15.29■□□□□ 0.04
CCDC9-203ENST00000596938 CDC42BPGQ6DT37 1551 aa15.28■□□□□ 0.04
CCDC9-203ENST00000596938 NPHP3Q7Z494 1330 aa15.28■□□□□ 0.04
CCDC9-203ENST00000596938 MEX3CQ5U5Q3 659 aaKnown RBP15.28■□□□□ 0.04
CCDC9-203ENST00000596938 NUTM2FA1L443 756 aa15.27■□□□□ 0.04
CCDC9-203ENST00000596938 NUTM2BA6NNL0 878 aaPredicted RBP15.27■□□□□ 0.04
CCDC9-203ENST00000596938 NUTM2EB1AL46 878 aaPredicted RBP15.27■□□□□ 0.04
CCDC9-203ENST00000596938 FOXO3O43524 673 aa15.27■□□□□ 0.04
CCDC9-203ENST00000596938 NUTM2AQ8IVF1 878 aaPredicted RBP15.27■□□□□ 0.04
CCDC9-203ENST00000596938 TRAK1Q9UPV9 953 aa15.27■□□□□ 0.04
CCDC9-203ENST00000596938 LAMC1P11047 1609 aa15.27■□□□□ 0.03
CCDC9-203ENST00000596938 PNPLA6Q8IY17 1366 aa15.26■□□□□ 0.03
CCDC9-203ENST00000596938 ADGRB1O14514 1584 aa15.26■□□□□ 0.03
CCDC9-203ENST00000596938 DLC1Q96QB1 1528 aa15.26■□□□□ 0.03
CCDC9-203ENST00000596938 LRP6O75581 1613 aa15.25■□□□□ 0.03
CCDC9-203ENST00000596938 NHSL1Q5SYE7 1610 aa15.25■□□□□ 0.03
CCDC9-203ENST00000596938 SAFB2Q14151 953 aaKnown RBP eCLIP15.25■□□□□ 0.03
CCDC9-203ENST00000596938 ZNF772Q68DY9 489 aaPredicted RBP15.25■□□□□ 0.03
CCDC9-203ENST00000596938 KNDC1Q76NI1 1749 aa15.25■□□□□ 0.03
CCDC9-203ENST00000596938 SHPRHQ149N8 1683 aa15.24■□□□□ 0.03
CCDC9-203ENST00000596938 PHF8Q9UPP1 1060 aa15.22■□□□□ 0.03
CCDC9-203ENST00000596938 TRIM26Q12899 539 aaPredicted RBP15.21■□□□□ 0.03
CCDC9-203ENST00000596938 XPCQ01831 940 aaPredicted RBP15.2■□□□□ 0.02
CCDC9-203ENST00000596938 KRT28Q7Z3Y7 464 aa15.2■□□□□ 0.02
CCDC9-203ENST00000596938 L3MBTL2Q969R5 705 aa15.2■□□□□ 0.02
CCDC9-203ENST00000596938 SIN3AQ96ST3 1273 aa15.2■□□□□ 0.02
CCDC9-203ENST00000596938 MINK1Q8N4C8 1332 aaPredicted RBP15.19■□□□□ 0.02
CCDC9-203ENST00000596938 WASLO00401 505 aaPredicted RBP15.19■□□□□ 0.02
CCDC9-203ENST00000596938 PSME1Q06323 249 aa15.19■□□□□ 0.02
CCDC9-203ENST00000596938 NBPF1Q3BBV0 1214 aa15.19■□□□□ 0.02
CCDC9-203ENST00000596938 HIRIP3Q9BW71 556 aaPredicted RBP15.19■□□□□ 0.02
CCDC9-203ENST00000596938 PXDNQ92626 1479 aa15.19■□□□□ 0.02
CCDC9-203ENST00000596938 ANKARQ7Z5J8 1434 aa15.18■□□□□ 0.02
CCDC9-203ENST00000596938 C8orf37Q96NL8 207 aa15.18■□□□□ 0.02
CCDC9-203ENST00000596938 AFF2P51816 1311 aa15.17■□□□□ 0.02
CCDC9-203ENST00000596938 SPATA31A3Q5VYP0 1347 aa15.17■□□□□ 0.02
CCDC9-203ENST00000596938 EIF3AQ14152 1382 aaKnown RBP15.17■□□□□ 0.02
CCDC9-203ENST00000596938 ADAMTS2O95450 1211 aa15.17■□□□□ 0.02
CCDC9-203ENST00000596938 NGLY1Q96IV0 654 aa15.17■□□□□ 0.02
CCDC9-203ENST00000596938 RXRBP28702 533 aa15.16■□□□□ 0.02
CCDC9-203ENST00000596938 NEUROD1Q13562 356 aa15.16■□□□□ 0.02
CCDC9-203ENST00000596938 FMN2Q9NZ56 1722 aa15.16■□□□□ 0.02
CCDC9-203ENST00000596938 FNBP4Q8N3X1 1017 aaPredicted RBP15.15■□□□□ 0.02
CCDC9-203ENST00000596938 PMFBP1Q8TBY8 1022 aa15.15■□□□□ 0.02
CCDC9-203ENST00000596938 QTRT2Q9H974 415 aaKnown RBP15.14■□□□□ 0.01
CCDC9-203ENST00000596938 ADGRB2O60241 1585 aa15.14■□□□□ 0.01
CCDC9-203ENST00000596938 PRR36Q9H6K5 1346 aa15.14■□□□□ 0.01
CCDC9-203ENST00000596938 SBNO1A3KN83 1393 aa15.13■□□□□ 0.01
CCDC9-203ENST00000596938 NUDT16Q96DE0 195 aaKnown RBP15.12■□□□□ 0.01
CCDC9-203ENST00000596938 CDK19Q9BWU1 502 aa15.12■□□□□ 0.01
CCDC9-203ENST00000596938 RBM6P78332 1123 aaKnown RBP15.11■□□□□ 0.01
CCDC9-203ENST00000596938 USP21Q9UK80 565 aa15.11■□□□□ 0.01
CCDC9-203ENST00000596938 KIF1AQ12756 1690 aa15.11■□□□□ 0.01
CCDC9-203ENST00000596938 COL22A1Q8NFW1 1626 aaPredicted RBP15.1■□□□□ 0.01
CCDC9-203ENST00000596938 KIAA1210Q9ULL0 1709 aa15.1■□□□□ 0.01
CCDC9-203ENST00000596938 NGDNQ8NEJ9 315 aaKnown RBP15.1■□□□□ 0.01
CCDC9-203ENST00000596938 TULP4Q9NRJ4 1543 aa15.1■□□□□ 0.01
CCDC9-203ENST00000596938 GPRASP1Q5JY77 1395 aa15.1■□□□□ 0.01
CCDC9-203ENST00000596938 TRPC5Q9UL62 973 aaPredicted RBP15.09■□□□□ 0.01
CCDC9-203ENST00000596938 CCDC61Q9Y6R9 512 aa15.09■□□□□ 0.01
CCDC9-203ENST00000596938 CENPJQ9HC77 1338 aaPredicted RBP15.09■□□□□ 0.01
CCDC9-203ENST00000596938 ARHGEF10O15013 1369 aa15.09■□□□□ 0.01
CCDC9-203ENST00000596938 TNS3Q68CZ2 1445 aa15.09■□□□□ 0.01
CCDC9-203ENST00000596938 CDK12Q9NYV4 1490 aaPredicted RBP15.08■□□□□ 0
CCDC9-203ENST00000596938 PLEKHG3A1L390 1219 aa15.07■□□□□ 0
CCDC9-203ENST00000596938 LMOD2Q6P5Q4 547 aa15.07■□□□□ 0
CCDC9-203ENST00000596938 USP32Q8NFA0 1604 aa15.06■□□□□ 0
CCDC9-203ENST00000596938 CABLES1Q8TDN4 633 aa15.06■□□□□ 0
CCDC9-203ENST00000596938 HAP1P54257 671 aaPredicted RBP15.05■□□□□ -0
CCDC9-203ENST00000596938 NBPF8Q3BBV2 869 aa15.05■□□□□ -0
CCDC9-203ENST00000596938 ARHGEF28Q8N1W1 1705 aaKnown RBP15.04■□□□□ -0
CCDC9-203ENST00000596938 ATP7BP35670 1465 aa15.04■□□□□ -0
CCDC9-203ENST00000596938 BCL9LQ86UU0 1499 aa15.04■□□□□ -0
CCDC9-203ENST00000596938 ROCK2O75116 1388 aaKnown RBP15.04■□□□□ -0
CCDC9-203ENST00000596938 POLR3AO14802 1390 aaPredicted RBP15.03■□□□□ -0
CCDC9-203ENST00000596938 SRPK2P78362 688 aaKnown RBP15.03■□□□□ -0
CCDC9-203ENST00000596938 UNC5CLQ8IV45 518 aa15.03■□□□□ -0
CCDC9-203ENST00000596938 RGPD8O14715 1765 aaPredicted RBP15.03■□□□□ -0
CCDC9-203ENST00000596938 ATRNO75882 1429 aa15.02■□□□□ -0
CCDC9-203ENST00000596938 ACEP12821 1306 aa15.02■□□□□ -0
CCDC9-203ENST00000596938 PAK3O75914 559 aaPredicted RBP15.02■□□□□ -0
CCDC9-203ENST00000596938 GJD4Q96KN9 370 aaPredicted RBP15.02■□□□□ -0
CCDC9-203ENST00000596938 CABP2Q9NPB3 220 aa15.02■□□□□ -0
CCDC9-203ENST00000596938 TONSLQ96HA7 1378 aa15.01□□□□□ -0.01
CCDC9-203ENST00000596938 FAM83GA6ND36 823 aa15.01□□□□□ -0.01
CCDC9-203ENST00000596938 UPF1Q92900 1129 aaKnown RBP eCLIP15.01□□□□□ -0.01
CCDC9-203ENST00000596938 SLIT2O94813 1529 aa15.01□□□□□ -0.01
CCDC9-203ENST00000596938 EVC2Q86UK5 1308 aa15□□□□□ -0.01
CCDC9-203ENST00000596938 PLEKHG5O94827 1062 aa15□□□□□ -0.01
CCDC9-203ENST00000596938 RGS12O14924 1447 aa14.99□□□□□ -0.01
CCDC9-203ENST00000596938 CARD11Q9BXL7 1154 aa14.98□□□□□ -0.01
CCDC9-203ENST00000596938 CABP1Q9NZU7 370 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms