RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 DLC1Q96QB1 1528 aa19.26■□□□□ 0.67
LIG1-212ENST00000596549 ARHGEF28Q8N1W1 1705 aaKnown RBP19.26■□□□□ 0.67
LIG1-212ENST00000596549 KIF1AQ12756 1690 aa19.26■□□□□ 0.67
LIG1-212ENST00000596549 COL22A1Q8NFW1 1626 aaPredicted RBP19.25■□□□□ 0.67
LIG1-212ENST00000596549 ADGRB2O60241 1585 aa19.25■□□□□ 0.67
LIG1-212ENST00000596549 DDX17Q92841 729 aaKnown RBP19.25■□□□□ 0.67
LIG1-212ENST00000596549 SPATA31A6Q5VVP1 1343 aa19.25■□□□□ 0.67
LIG1-212ENST00000596549 C14orf93Q9H972 538 aaKnown RBP19.24■□□□□ 0.67
LIG1-212ENST00000596549 STK26Q9P289 416 aa19.24■□□□□ 0.67
LIG1-212ENST00000596549 USP32Q8NFA0 1604 aa19.24■□□□□ 0.67
LIG1-212ENST00000596549 CFAP70Q5T0N1 1121 aa19.23■□□□□ 0.67
LIG1-212ENST00000596549 WAPLQ7Z5K2 1190 aa19.23■□□□□ 0.67
LIG1-212ENST00000596549 DHX57Q6P158 1386 aaKnown RBP19.22■□□□□ 0.67
LIG1-212ENST00000596549 PNPLA6Q8IY17 1366 aa19.22■□□□□ 0.67
LIG1-212ENST00000596549 ORAI2Q96SN7 254 aa19.21■□□□□ 0.67
LIG1-212ENST00000596549 KIAA1210Q9ULL0 1709 aa19.21■□□□□ 0.67
LIG1-212ENST00000596549 MARF1Q9Y4F3 1742 aaKnown RBP19.21■□□□□ 0.67
LIG1-212ENST00000596549 PXDNQ92626 1479 aa19.21■□□□□ 0.67
LIG1-212ENST00000596549 POTEAQ6S8J7 498 aa19.19■□□□□ 0.66
LIG1-212ENST00000596549 SOS2Q07890 1332 aaPredicted RBP19.17■□□□□ 0.66
LIG1-212ENST00000596549 ABCA3Q99758 1704 aa19.16■□□□□ 0.66
LIG1-212ENST00000596549 DCAF11Q8TEB1 546 aa19.14■□□□□ 0.65
LIG1-212ENST00000596549 LRRC59Q96AG4 307 aaKnown RBP19.14■□□□□ 0.65
LIG1-212ENST00000596549 SIRT1Q96EB6 747 aa19.14■□□□□ 0.65
LIG1-212ENST00000596549 NUTM2FA1L443 756 aa19.12■□□□□ 0.65
LIG1-212ENST00000596549 KDM2AQ9Y2K7 1162 aa19.12■□□□□ 0.65
LIG1-212ENST00000596549 ITSN1Q15811 1721 aa19.11■□□□□ 0.65
LIG1-212ENST00000596549 NUTM2BA6NNL0 878 aaPredicted RBP19.11■□□□□ 0.65
LIG1-212ENST00000596549 NUTM2EB1AL46 878 aaPredicted RBP19.11■□□□□ 0.65
LIG1-212ENST00000596549 ESCO1Q5FWF5 840 aa19.11■□□□□ 0.65
LIG1-212ENST00000596549 MEX3CQ5U5Q3 659 aaKnown RBP19.11■□□□□ 0.65
LIG1-212ENST00000596549 NUTM2AQ8IVF1 878 aaPredicted RBP19.11■□□□□ 0.65
LIG1-212ENST00000596549 PRAM1Q96QH2 718 aa19.11■□□□□ 0.65
LIG1-212ENST00000596549 TRPM3Q9HCF6 1732 aaPredicted RBP19.11■□□□□ 0.65
LIG1-212ENST00000596549 NPHP3Q7Z494 1330 aa19.1■□□□□ 0.65
LIG1-212ENST00000596549 TOPAZ1Q8N9V7 1692 aa19.09■□□□□ 0.65
LIG1-212ENST00000596549 TULP4Q9NRJ4 1543 aa19.09■□□□□ 0.65
LIG1-212ENST00000596549 TRPM1Q7Z4N2 1603 aa19.08■□□□□ 0.65
LIG1-212ENST00000596549 SAFB2Q14151 953 aaKnown RBP eCLIP19.08■□□□□ 0.64
LIG1-212ENST00000596549 ANKARQ7Z5J8 1434 aa19.08■□□□□ 0.64
LIG1-212ENST00000596549 ALS2Q96Q42 1657 aa19.06■□□□□ 0.64
LIG1-212ENST00000596549 XPCQ01831 940 aaPredicted RBP19.06■□□□□ 0.64
LIG1-212ENST00000596549 STAC3Q96MF2 364 aa19.06■□□□□ 0.64
LIG1-212ENST00000596549 TRAK1Q9UPV9 953 aa19.06■□□□□ 0.64
LIG1-212ENST00000596549 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.05■□□□□ 0.64
LIG1-212ENST00000596549 CRYBG1Q9Y4K1 1723 aa19.05■□□□□ 0.64
LIG1-212ENST00000596549 AFF2P51816 1311 aa19.05■□□□□ 0.64
LIG1-212ENST00000596549 FOXO3O43524 673 aa19.05■□□□□ 0.64
LIG1-212ENST00000596549 QRICH2Q9H0J4 1663 aa19.05■□□□□ 0.64
LIG1-212ENST00000596549 ZNF772Q68DY9 489 aaPredicted RBP19.04■□□□□ 0.64
LIG1-212ENST00000596549 PLCH1Q4KWH8 1693 aa19.03■□□□□ 0.64
LIG1-212ENST00000596549 ATP7BP35670 1465 aa19.03■□□□□ 0.64
LIG1-212ENST00000596549 TNS3Q68CZ2 1445 aa19.02■□□□□ 0.64
LIG1-212ENST00000596549 POGKQ9P215 609 aa19.02■□□□□ 0.64
LIG1-212ENST00000596549 CDK12Q9NYV4 1490 aaPredicted RBP19.02■□□□□ 0.63
LIG1-212ENST00000596549 C8orf37Q96NL8 207 aa19.01■□□□□ 0.63
LIG1-212ENST00000596549 MINK1Q8N4C8 1332 aaPredicted RBP19■□□□□ 0.63
LIG1-212ENST00000596549 PRR36Q9H6K5 1346 aa19■□□□□ 0.63
LIG1-212ENST00000596549 ADAMTS2O95450 1211 aa19■□□□□ 0.63
LIG1-212ENST00000596549 HIRIP3Q9BW71 556 aaPredicted RBP19■□□□□ 0.63
LIG1-212ENST00000596549 SPATA31A3Q5VYP0 1347 aa19■□□□□ 0.63
LIG1-212ENST00000596549 PHF8Q9UPP1 1060 aa18.99■□□□□ 0.63
LIG1-212ENST00000596549 RGS12O14924 1447 aa18.99■□□□□ 0.63
LIG1-212ENST00000596549 EIF3AQ14152 1382 aaKnown RBP18.97■□□□□ 0.63
LIG1-212ENST00000596549 NWD2Q9ULI1 1742 aa18.97■□□□□ 0.63
LIG1-212ENST00000596549 PHRF1Q9P1Y6 1649 aaKnown RBP18.96■□□□□ 0.63
LIG1-212ENST00000596549 SBNO1A3KN83 1393 aa18.95■□□□□ 0.62
LIG1-212ENST00000596549 NRAPQ86VF7 1730 aa18.95■□□□□ 0.62
LIG1-212ENST00000596549 NBPF1Q3BBV0 1214 aa18.95■□□□□ 0.62
LIG1-212ENST00000596549 SIN3AQ96ST3 1273 aa18.95■□□□□ 0.62
LIG1-212ENST00000596549 ATRNO75882 1429 aa18.94■□□□□ 0.62
LIG1-212ENST00000596549 WASLO00401 505 aaPredicted RBP18.94■□□□□ 0.62
LIG1-212ENST00000596549 KRT28Q7Z3Y7 464 aa18.94■□□□□ 0.62
LIG1-212ENST00000596549 BCL9LQ86UU0 1499 aa18.93■□□□□ 0.62
LIG1-212ENST00000596549 PMFBP1Q8TBY8 1022 aa18.93■□□□□ 0.62
LIG1-212ENST00000596549 SLIT2O94813 1529 aa18.93■□□□□ 0.62
LIG1-212ENST00000596549 RXRBP28702 533 aa18.92■□□□□ 0.62
LIG1-212ENST00000596549 L3MBTL2Q969R5 705 aa18.92■□□□□ 0.62
LIG1-212ENST00000596549 NGLY1Q96IV0 654 aa18.92■□□□□ 0.62
LIG1-212ENST00000596549 GLI3P10071 1580 aa18.92■□□□□ 0.62
LIG1-212ENST00000596549 FNBP4Q8N3X1 1017 aaPredicted RBP18.91■□□□□ 0.62
LIG1-212ENST00000596549 USP21Q9UK80 565 aa18.89■□□□□ 0.61
LIG1-212ENST00000596549 ARHGEF10O15013 1369 aa18.89■□□□□ 0.61
LIG1-212ENST00000596549 QTRT2Q9H974 415 aaKnown RBP18.88■□□□□ 0.61
LIG1-212ENST00000596549 RBM6P78332 1123 aaKnown RBP18.87■□□□□ 0.61
LIG1-212ENST00000596549 COL14A1Q05707 1796 aaKnown RBP18.87■□□□□ 0.61
LIG1-212ENST00000596549 BRWD3Q6RI45 1802 aa18.87■□□□□ 0.61
LIG1-212ENST00000596549 PSME1Q06323 249 aa18.86■□□□□ 0.61
LIG1-212ENST00000596549 CABLES1Q8TDN4 633 aa18.86■□□□□ 0.61
LIG1-212ENST00000596549 NEUROD1Q13562 356 aa18.85■□□□□ 0.61
LIG1-212ENST00000596549 NRKQ7Z2Y5 1582 aa18.85■□□□□ 0.61
LIG1-212ENST00000596549 POLR3AO14802 1390 aaPredicted RBP18.84■□□□□ 0.61
LIG1-212ENST00000596549 GPRASP1Q5JY77 1395 aa18.84■□□□□ 0.61
LIG1-212ENST00000596549 AKAP12Q02952 1782 aa18.84■□□□□ 0.61
LIG1-212ENST00000596549 CENPJQ9HC77 1338 aaPredicted RBP18.84■□□□□ 0.61
LIG1-212ENST00000596549 NUDT16Q96DE0 195 aaKnown RBP18.84■□□□□ 0.61
LIG1-212ENST00000596549 TRPC5Q9UL62 973 aaPredicted RBP18.84■□□□□ 0.61
LIG1-212ENST00000596549 CDK19Q9BWU1 502 aa18.83■□□□□ 0.6
LIG1-212ENST00000596549 RALGAPBQ86X10 1494 aa18.82■□□□□ 0.6
LIG1-212ENST00000596549 ROCK2O75116 1388 aaKnown RBP18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms