RNA–Protein interactions for RNA: ENST00000590556.1

DDX39A-214, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 575 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-214ENST00000590556 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.14■■□□□ 1.94
DDX39A-214ENST00000590556 UBAP1LF5GYI3 381 aa27.13■■□□□ 1.93
DDX39A-214ENST00000590556 ATF3P18847 181 aa27.13■■□□□ 1.93
DDX39A-214ENST00000590556 TOM1O60784 492 aa27.12■■□□□ 1.93
DDX39A-214ENST00000590556 EIF3AQ14152 1382 aaKnown RBP27.11■■□□□ 1.93
DDX39A-214ENST00000590556 CENPJQ9HC77 1338 aaPredicted RBP27.11■■□□□ 1.93
DDX39A-214ENST00000590556 CADPS2Q86UW7 1296 aa27.1■■□□□ 1.93
DDX39A-214ENST00000590556 DCCP43146 1447 aa27.09■■□□□ 1.93
DDX39A-214ENST00000590556 MINK1Q8N4C8 1332 aaPredicted RBP27.09■■□□□ 1.93
DDX39A-214ENST00000590556 HIRIP3Q9BW71 556 aaPredicted RBP27.06■■□□□ 1.92
DDX39A-214ENST00000590556 CDC42BPGQ6DT37 1551 aa27.05■■□□□ 1.92
DDX39A-214ENST00000590556 SLAIN2Q9P270 581 aa27.04■■□□□ 1.92
DDX39A-214ENST00000590556 QRICH2Q9H0J4 1663 aa27.03■■□□□ 1.92
DDX39A-214ENST00000590556 USP47Q96K76 1375 aa27.02■■□□□ 1.92
DDX39A-214ENST00000590556 PIP4K2BP78356 416 aa27.02■■□□□ 1.92
DDX39A-214ENST00000590556 ADGRB2O60241 1585 aa27.01■■□□□ 1.92
DDX39A-214ENST00000590556 SCAF1Q9H7N4 1312 aaKnown RBP27■■□□□ 1.91
DDX39A-214ENST00000590556 FBXO41Q8TF61 875 aa27■■□□□ 1.91
DDX39A-214ENST00000590556 MST1RQ04912 1400 aa26.99■■□□□ 1.91
DDX39A-214ENST00000590556 ST20-MTHFSA0A0A6YYL1 179 aa26.98■■□□□ 1.91
DDX39A-214ENST00000590556 WASLO00401 505 aaPredicted RBP26.98■■□□□ 1.91
DDX39A-214ENST00000590556 FMN2Q9NZ56 1722 aa26.97■■□□□ 1.91
DDX39A-214ENST00000590556 NUTM2FA1L443 756 aa26.97■■□□□ 1.91
DDX39A-214ENST00000590556 ZEB1P37275 1124 aaPredicted RBP26.96■■□□□ 1.91
DDX39A-214ENST00000590556 CDK19Q9BWU1 502 aa26.95■■□□□ 1.9
DDX39A-214ENST00000590556 C1orf167Q5SNV9 1468 aa26.94■■□□□ 1.9
DDX39A-214ENST00000590556 SBNO2Q9Y2G9 1366 aa26.94■■□□□ 1.9
DDX39A-214ENST00000590556 EIF4G2P78344 907 aaKnown RBP eCLIP26.93■■□□□ 1.9
DDX39A-214ENST00000590556 EVC2Q86UK5 1308 aa26.92■■□□□ 1.9
DDX39A-214ENST00000590556 TESK2Q96S53 571 aa26.9■■□□□ 1.9
DDX39A-214ENST00000590556 ROBO1Q9Y6N7 1651 aa26.89■■□□□ 1.9
DDX39A-214ENST00000590556 SLC24A1O60721 1099 aa26.89■■□□□ 1.9
DDX39A-214ENST00000590556 SRPK2P78362 688 aaKnown RBP26.89■■□□□ 1.9
DDX39A-214ENST00000590556 ESCO1Q5FWF5 840 aa26.89■■□□□ 1.9
DDX39A-214ENST00000590556 TULP4Q9NRJ4 1543 aa26.89■■□□□ 1.89
DDX39A-214ENST00000590556 ANKARQ7Z5J8 1434 aa26.89■■□□□ 1.89
DDX39A-214ENST00000590556 HSPA5P11021 654 aaKnown RBP26.88■■□□□ 1.89
DDX39A-214ENST00000590556 BRINP3Q76B58 766 aa26.88■■□□□ 1.89
DDX39A-214ENST00000590556 ORAI2Q96SN7 254 aa26.88■■□□□ 1.89
DDX39A-214ENST00000590556 RGPD8O14715 1765 aaPredicted RBP26.86■■□□□ 1.89
DDX39A-214ENST00000590556 NUDT16Q96DE0 195 aaKnown RBP26.86■■□□□ 1.89
DDX39A-214ENST00000590556 CABP2Q9NPB3 220 aa26.86■■□□□ 1.89
DDX39A-214ENST00000590556 USP32Q8NFA0 1604 aa26.86■■□□□ 1.89
DDX39A-214ENST00000590556 PRR36Q9H6K5 1346 aa26.86■■□□□ 1.89
DDX39A-214ENST00000590556 ATP7BP35670 1465 aa26.82■■□□□ 1.88
DDX39A-214ENST00000590556 TMF1P82094 1093 aa26.82■■□□□ 1.88
DDX39A-214ENST00000590556 PHF8Q9UPP1 1060 aa26.81■■□□□ 1.88
DDX39A-214ENST00000590556 CCDC61Q9Y6R9 512 aa26.8■■□□□ 1.88
DDX39A-214ENST00000590556 ITSN1Q15811 1721 aa26.79■■□□□ 1.88
DDX39A-214ENST00000590556 KIF1AQ12756 1690 aa26.77■■□□□ 1.88
DDX39A-214ENST00000590556 DISP3Q9P2K9 1392 aa26.77■■□□□ 1.88
DDX39A-214ENST00000590556 ILDR1Q86SU0 546 aaPredicted RBP26.77■■□□□ 1.88
DDX39A-214ENST00000590556 PMFBP1Q8TBY8 1022 aa26.77■■□□□ 1.88
DDX39A-214ENST00000590556 FOXO3O43524 673 aa26.76■■□□□ 1.87
DDX39A-214ENST00000590556 HSPA1LP34931 641 aa26.76■■□□□ 1.87
DDX39A-214ENST00000590556 DDX17Q92841 729 aaKnown RBP26.76■■□□□ 1.87
DDX39A-214ENST00000590556 PUS7Q96PZ0 661 aaKnown RBP26.76■■□□□ 1.87
DDX39A-214ENST00000590556 ATAD2Q6PL18 1390 aa26.75■■□□□ 1.87
DDX39A-214ENST00000590556 TOPAZ1Q8N9V7 1692 aa26.75■■□□□ 1.87
DDX39A-214ENST00000590556 CDCA8Q53HL2 280 aa26.74■■□□□ 1.87
DDX39A-214ENST00000590556 AHDC1Q5TGY3 1603 aaPredicted RBP26.74■■□□□ 1.87
DDX39A-214ENST00000590556 PPIP5K1Q6PFW1 1433 aa26.73■■□□□ 1.87
DDX39A-214ENST00000590556 PHLPP1O60346 1717 aa26.73■■□□□ 1.87
DDX39A-214ENST00000590556 NHSL1Q5SYE7 1610 aa26.73■■□□□ 1.87
DDX39A-214ENST00000590556 NPHP3Q7Z494 1330 aa26.73■■□□□ 1.87
DDX39A-214ENST00000590556 PLEKHG3A1L390 1219 aa26.72■■□□□ 1.87
DDX39A-214ENST00000590556 NGDNQ8NEJ9 315 aaKnown RBP26.72■■□□□ 1.87
DDX39A-214ENST00000590556 CABP1Q9NZU7 370 aa26.72■■□□□ 1.87
DDX39A-214ENST00000590556 PSME1Q06323 249 aa26.69■■□□□ 1.86
DDX39A-214ENST00000590556 XPCQ01831 940 aaPredicted RBP26.68■■□□□ 1.86
DDX39A-214ENST00000590556 TMC1Q8TDI8 760 aa26.68■■□□□ 1.86
DDX39A-214ENST00000590556 ACEP12821 1306 aa26.67■■□□□ 1.86
DDX39A-214ENST00000590556 SOS2Q07890 1332 aaPredicted RBP26.67■■□□□ 1.86
DDX39A-214ENST00000590556 KRT28Q7Z3Y7 464 aa26.67■■□□□ 1.86
DDX39A-214ENST00000590556 POLR3AO14802 1390 aaPredicted RBP26.66■■□□□ 1.86
DDX39A-214ENST00000590556 COL16A1Q07092 1604 aaPredicted RBP26.65■■□□□ 1.86
DDX39A-214ENST00000590556 PXDNQ92626 1479 aa26.65■■□□□ 1.86
DDX39A-214ENST00000590556 POLR3GLQ9BT43 218 aa26.64■■□□□ 1.86
DDX39A-214ENST00000590556 LRRC59Q96AG4 307 aaKnown RBP26.63■■□□□ 1.85
DDX39A-214ENST00000590556 SLC12A5Q9H2X9 1139 aa26.63■■□□□ 1.85
DDX39A-214ENST00000590556 NINLQ9Y2I6 1382 aa26.62■■□□□ 1.85
DDX39A-214ENST00000590556 C11orf95C9JLR9 678 aaPredicted RBP26.62■■□□□ 1.85
DDX39A-214ENST00000590556 ZNF692Q9BU19 519 aaPredicted RBP26.59■■□□□ 1.85
DDX39A-214ENST00000590556 TERF2IPQ9NYB0 399 aa26.58■■□□□ 1.85
DDX39A-214ENST00000590556 SBNO1A3KN83 1393 aa26.58■■□□□ 1.84
DDX39A-214ENST00000590556 HDGFL2Q7Z4V5 671 aaPredicted RBP26.57■■□□□ 1.84
DDX39A-214ENST00000590556 CPSF1Q10570 1443 aaKnown RBP26.56■■□□□ 1.84
DDX39A-214ENST00000590556 PAK3O75914 559 aaPredicted RBP26.56■■□□□ 1.84
DDX39A-214ENST00000590556 KIF7Q2M1P5 1343 aa26.56■■□□□ 1.84
DDX39A-214ENST00000590556 SPATA31A3Q5VYP0 1347 aa26.56■■□□□ 1.84
DDX39A-214ENST00000590556 JCADQ9P266 1359 aa26.56■■□□□ 1.84
DDX39A-214ENST00000590556 AKAP12Q02952 1782 aa26.56■■□□□ 1.84
DDX39A-214ENST00000590556 KTN1Q86UP2 1357 aaKnown RBP26.55■■□□□ 1.84
DDX39A-214ENST00000590556 USP6P35125 1406 aa26.55■■□□□ 1.84
DDX39A-214ENST00000590556 CD163L1Q9NR16 1453 aa26.55■■□□□ 1.84
DDX39A-214ENST00000590556 TRPM3Q9HCF6 1732 aaPredicted RBP26.54■■□□□ 1.84
DDX39A-214ENST00000590556 LMOD2Q6P5Q4 547 aa26.53■■□□□ 1.84
DDX39A-214ENST00000590556 BRD4O60885 1362 aaPredicted RBP26.53■■□□□ 1.84
DDX39A-214ENST00000590556 TNS3Q68CZ2 1445 aa26.53■■□□□ 1.84
DDX39A-214ENST00000590556 MYOM1P52179 1685 aa26.53■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms