RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 C11orf95C9JLR9 678 aaPredicted RBP12.77□□□□□ -0.37
SMCHD1-207ENST00000581711 GRIPAP1Q4V328 841 aa12.77□□□□□ -0.37
SMCHD1-207ENST00000581711 WNT7AO00755 349 aa12.75□□□□□ -0.37
SMCHD1-207ENST00000581711 GPIHBP1Q8IV16 184 aa12.75□□□□□ -0.37
SMCHD1-207ENST00000581711 Q3C1V9 767 aa12.74□□□□□ -0.37
SMCHD1-207ENST00000581711 TRIM32Q13049 653 aa12.73□□□□□ -0.37
SMCHD1-207ENST00000581711 WFS1O76024 890 aa12.72□□□□□ -0.37
SMCHD1-207ENST00000581711 SMPD1P17405 629 aa12.72□□□□□ -0.37
SMCHD1-207ENST00000581711 MMP16P51512 607 aa12.72□□□□□ -0.37
SMCHD1-207ENST00000581711 SNIP1Q8TAD8 396 aaKnown RBP12.72□□□□□ -0.37
SMCHD1-207ENST00000581711 CD46P15529 392 aa12.7□□□□□ -0.38
SMCHD1-207ENST00000581711 MRGPRX2Q96LB1 330 aa12.69□□□□□ -0.38
SMCHD1-207ENST00000581711 USB1Q9BQ65 265 aaKnown RBP12.68□□□□□ -0.38
SMCHD1-207ENST00000581711 DXOO77932 396 aaKnown RBP12.67□□□□□ -0.38
SMCHD1-207ENST00000581711 NFX1Q12986 1120 aaKnown RBP12.67□□□□□ -0.38
SMCHD1-207ENST00000581711 ATP13A2Q9NQ11 1180 aa12.67□□□□□ -0.38
SMCHD1-207ENST00000581711 J3QL48 77 aa12.66□□□□□ -0.38
SMCHD1-207ENST00000581711 KDM4AO75164 1064 aa12.66□□□□□ -0.38
SMCHD1-207ENST00000581711 PLCB2Q00722 1185 aa12.66□□□□□ -0.38
SMCHD1-207ENST00000581711 MAP2K5Q13163 448 aa12.63□□□□□ -0.39
SMCHD1-207ENST00000581711 HLA-CQ95604 372 aa12.63□□□□□ -0.39
SMCHD1-207ENST00000581711 REPIN1Q9BWE0 567 aaKnown RBP12.63□□□□□ -0.39
SMCHD1-207ENST00000581711 SNRPBP14678 240 aaKnown RBP12.62□□□□□ -0.39
SMCHD1-207ENST00000581711 USP46P62068 366 aa12.6□□□□□ -0.39
SMCHD1-207ENST00000581711 CCDC24Q8N4L8 307 aa12.6□□□□□ -0.39
SMCHD1-207ENST00000581711 HPS1Q92902 700 aa12.6□□□□□ -0.39
SMCHD1-207ENST00000581711 TRIM47Q96LD4 638 aa12.6□□□□□ -0.39
SMCHD1-207ENST00000581711 WIPF1O43516 503 aa12.59□□□□□ -0.39
SMCHD1-207ENST00000581711 SKOR1P84550 965 aa12.59□□□□□ -0.39
SMCHD1-207ENST00000581711 SENP2Q9HC62 589 aa12.59□□□□□ -0.39
SMCHD1-207ENST00000581711 MDM2Q00987 491 aaPredicted RBP12.58□□□□□ -0.4
SMCHD1-207ENST00000581711 RC3H1Q5TC82 1133 aaKnown RBP12.58□□□□□ -0.4
SMCHD1-207ENST00000581711 IRF6O14896 467 aa12.57□□□□□ -0.4
SMCHD1-207ENST00000581711 HOXA2O43364 376 aa12.57□□□□□ -0.4
SMCHD1-207ENST00000581711 WNT7BP56706 349 aa12.57□□□□□ -0.4
SMCHD1-207ENST00000581711 LCE2CQ5TA81 110 aa12.56□□□□□ -0.4
SMCHD1-207ENST00000581711 STK17AQ9UEE5 414 aa12.56□□□□□ -0.4
SMCHD1-207ENST00000581711 TERTO14746 1132 aaKnown RBP12.54□□□□□ -0.4
SMCHD1-207ENST00000581711 INSM1Q01101 510 aaPredicted RBP12.54□□□□□ -0.4
SMCHD1-207ENST00000581711 GUCA2AQ02747 115 aa12.54□□□□□ -0.4
SMCHD1-207ENST00000581711 JUNDP17535 347 aa12.52□□□□□ -0.41
SMCHD1-207ENST00000581711 KIFC2Q96AC6 838 aa12.52□□□□□ -0.41
SMCHD1-207ENST00000581711 MINK1Q8N4C8 1332 aaPredicted RBP12.51□□□□□ -0.41
SMCHD1-207ENST00000581711 ALDH1A1P00352 501 aa12.5□□□□□ -0.41
SMCHD1-207ENST00000581711 SYMPKQ92797 1274 aaKnown RBP12.5□□□□□ -0.41
SMCHD1-207ENST00000581711 CCDC102AQ96A19 550 aa12.48□□□□□ -0.41
SMCHD1-207ENST00000581711 GPCPD1Q9NPB8 672 aa12.47□□□□□ -0.41
SMCHD1-207ENST00000581711 FAM217BQ9NTX9 383 aaPredicted RBP12.47□□□□□ -0.41
SMCHD1-207ENST00000581711 PTCRAQ6ISU1 281 aaPredicted RBP12.46□□□□□ -0.41
SMCHD1-207ENST00000581711 RETREG3Q86VR2 466 aa12.46□□□□□ -0.41
SMCHD1-207ENST00000581711 NUDT12Q9BQG2 462 aa12.46□□□□□ -0.41
SMCHD1-207ENST00000581711 KDM2AQ9Y2K7 1162 aa12.46□□□□□ -0.41
SMCHD1-207ENST00000581711 TULP1O00294 542 aaPredicted RBP12.45□□□□□ -0.42
SMCHD1-207ENST00000581711 CLCN1P35523 988 aa12.45□□□□□ -0.42
SMCHD1-207ENST00000581711 HAP1P54257 671 aaPredicted RBP12.45□□□□□ -0.42
SMCHD1-207ENST00000581711 SIAH2O43255 324 aa12.44□□□□□ -0.42
SMCHD1-207ENST00000581711 EHBP1Q8NDI1 1231 aa12.44□□□□□ -0.42
SMCHD1-207ENST00000581711 NUTM1Q86Y26 1132 aa12.43□□□□□ -0.42
SMCHD1-207ENST00000581711 BMP1P13497 986 aa12.41□□□□□ -0.42
SMCHD1-207ENST00000581711 WASF2Q9Y6W5 498 aa12.4□□□□□ -0.42
SMCHD1-207ENST00000581711 FDX1P10109 184 aa12.39□□□□□ -0.43
SMCHD1-207ENST00000581711 TRIM46Q7Z4K8 759 aa12.39□□□□□ -0.43
SMCHD1-207ENST00000581711 PCDHGC3Q9UN70 934 aa12.39□□□□□ -0.43
SMCHD1-207ENST00000581711 CAPN5O15484 640 aaPredicted RBP12.38□□□□□ -0.43
SMCHD1-207ENST00000581711 CCNYL3P0C7X3 344 aa12.38□□□□□ -0.43
SMCHD1-207ENST00000581711 SH3BP2P78314 561 aa12.38□□□□□ -0.43
SMCHD1-207ENST00000581711 SLC16A10Q8TF71 515 aa12.38□□□□□ -0.43
SMCHD1-207ENST00000581711 NXF1Q9UBU9 619 aaKnown RBP12.38□□□□□ -0.43
SMCHD1-207ENST00000581711 C6orf229H3BNL8 230 aa12.37□□□□□ -0.43
SMCHD1-207ENST00000581711 MS4A1P11836 297 aa12.37□□□□□ -0.43
SMCHD1-207ENST00000581711 KRI1Q8N9T8 703 aaKnown RBP12.37□□□□□ -0.43
SMCHD1-207ENST00000581711 PTPRNQ16849 979 aa12.33□□□□□ -0.44
SMCHD1-207ENST00000581711 UNC93B1Q9H1C4 597 aa12.33□□□□□ -0.44
SMCHD1-207ENST00000581711 GMPRP36959 345 aa12.32□□□□□ -0.44
SMCHD1-207ENST00000581711 LINC01559Q495D7 138 aa12.31□□□□□ -0.44
SMCHD1-207ENST00000581711 NPAS3Q8IXF0 933 aa12.31□□□□□ -0.44
SMCHD1-207ENST00000581711 SPIRE2Q8WWL2 714 aa12.31□□□□□ -0.44
SMCHD1-207ENST00000581711 IRF7Q92985 503 aa12.31□□□□□ -0.44
SMCHD1-207ENST00000581711 EVA1BQ9NVM1 165 aa12.31□□□□□ -0.44
SMCHD1-207ENST00000581711 TLL2Q9Y6L7 1015 aa12.31□□□□□ -0.44
SMCHD1-207ENST00000581711 SSTR3P32745 418 aaPredicted RBP12.29□□□□□ -0.44
SMCHD1-207ENST00000581711 VEGFBP49765 207 aa12.29□□□□□ -0.44
SMCHD1-207ENST00000581711 BAP1Q92560 729 aa12.29□□□□□ -0.44
SMCHD1-207ENST00000581711 NDUFV2P19404 249 aa12.28□□□□□ -0.44
SMCHD1-207ENST00000581711 FAM181BA6NEQ2 426 aa12.27□□□□□ -0.45
SMCHD1-207ENST00000581711 MOXD2PA6NHM9 499 aa12.27□□□□□ -0.45
SMCHD1-207ENST00000581711 H3BM21 787 aa12.27□□□□□ -0.45
SMCHD1-207ENST00000581711 KCNH2Q12809 1159 aa12.27□□□□□ -0.45
SMCHD1-207ENST00000581711 ZNF511Q8NB15 262 aa12.27□□□□□ -0.45
SMCHD1-207ENST00000581711 PRR7Q8TB68 274 aa12.27□□□□□ -0.45
SMCHD1-207ENST00000581711 ZFP42Q96MM3 310 aa12.27□□□□□ -0.45
SMCHD1-207ENST00000581711 LORP23490 312 aaPredicted RBP12.26□□□□□ -0.45
SMCHD1-207ENST00000581711 ZSCAN1Q8NBB4 408 aa12.25□□□□□ -0.45
SMCHD1-207ENST00000581711 PLEKHG3A1L390 1219 aa12.24□□□□□ -0.45
SMCHD1-207ENST00000581711 VARSP26640 1264 aaKnown RBP12.24□□□□□ -0.45
SMCHD1-207ENST00000581711 NNTQ13423 1086 aa12.24□□□□□ -0.45
SMCHD1-207ENST00000581711 ERBB4Q15303 1308 aa12.23□□□□□ -0.45
SMCHD1-207ENST00000581711 MTMR2Q13614 643 aa12.23□□□□□ -0.45
SMCHD1-207ENST00000581711 DESI1Q6ICB0 168 aa12.23□□□□□ -0.45
SMCHD1-207ENST00000581711 MPNDQ8N594 471 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms