RNA–Protein interactions for RNA: ENST00000571272.5

SCARF1-205, Transcript of scavenger receptor class F member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCARF1, Length 2,871 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-205ENST00000571272 VWDEQ8N2E2 1590 aa22.37■■□□□ 1.17
SCARF1-205ENST00000571272 PMFBP1Q8TBY8 1022 aa22.36■■□□□ 1.17
SCARF1-205ENST00000571272 FANCAO15360 1455 aa22.36■■□□□ 1.17
SCARF1-205ENST00000571272 NOS1P29475 1434 aa22.36■■□□□ 1.17
SCARF1-205ENST00000571272 PDZRN3Q9UPQ7 1066 aa22.36■■□□□ 1.17
SCARF1-205ENST00000571272 UHRF1BP1LA0JNW5 1464 aa22.35■■□□□ 1.17
SCARF1-205ENST00000571272 VIRMAQ69YN4 1812 aaKnown RBP22.34■■□□□ 1.17
SCARF1-205ENST00000571272 POGKQ9P215 609 aa22.34■■□□□ 1.17
SCARF1-205ENST00000571272 KIF1BO60333 1816 aa22.33■■□□□ 1.16
SCARF1-205ENST00000571272 SBNO2Q9Y2G9 1366 aa22.32■■□□□ 1.16
SCARF1-205ENST00000571272 WDR63Q8IWG1 891 aa22.32■■□□□ 1.16
SCARF1-205ENST00000571272 PHF23Q9BUL5 403 aaPredicted RBP22.32■■□□□ 1.16
SCARF1-205ENST00000571272 UPF2Q9HAU5 1272 aaKnown RBP22.32■■□□□ 1.16
SCARF1-205ENST00000571272 SHPRHQ149N8 1683 aa22.31■■□□□ 1.16
SCARF1-205ENST00000571272 INO80Q9ULG1 1556 aaPredicted RBP22.31■■□□□ 1.16
SCARF1-205ENST00000571272 ADGRL1O94910 1474 aa22.3■■□□□ 1.16
SCARF1-205ENST00000571272 NLRP1Q9C000 1473 aa22.3■■□□□ 1.16
SCARF1-205ENST00000571272 MROH2AA6NES4 1674 aa22.3■■□□□ 1.16
SCARF1-205ENST00000571272 MROH1Q8NDA8 1641 aa22.3■■□□□ 1.16
SCARF1-205ENST00000571272 ARAP3Q8WWN8 1544 aa22.29■■□□□ 1.16
SCARF1-205ENST00000571272 U2AF1L5P0DN76 240 aaPredicted RBP22.29■■□□□ 1.16
SCARF1-205ENST00000571272 U2AF1Q01081 240 aaKnown RBP eCLIP22.29■■□□□ 1.16
SCARF1-205ENST00000571272 CFAP53Q96M91 514 aa22.29■■□□□ 1.16
SCARF1-205ENST00000571272 NEURL4Q96JN8 1562 aa22.29■■□□□ 1.16
SCARF1-205ENST00000571272 RWDD1Q9H446 243 aaPredicted RBP22.28■■□□□ 1.16
SCARF1-205ENST00000571272 CFAP65Q6ZU64 1925 aaKnown RBP22.28■■□□□ 1.16
SCARF1-205ENST00000571272 NUTM2DQ5VT03 806 aaPredicted RBP22.28■■□□□ 1.16
SCARF1-205ENST00000571272 IQSEC2Q5JU85 1478 aa22.27■■□□□ 1.16
SCARF1-205ENST00000571272 SPRYD3Q8NCJ5 442 aa22.27■■□□□ 1.16
SCARF1-205ENST00000571272 TBC1D32Q96NH3 1257 aa22.27■■□□□ 1.16
SCARF1-205ENST00000571272 C14orf93Q9H972 538 aaKnown RBP22.27■■□□□ 1.16
SCARF1-205ENST00000571272 EFCAB6Q5THR3 1501 aa22.27■■□□□ 1.15
SCARF1-205ENST00000571272 NRXN1Q9ULB1 1477 aa22.26■■□□□ 1.15
SCARF1-205ENST00000571272 TBC1D2Q9BYX2 928 aa22.26■■□□□ 1.15
SCARF1-205ENST00000571272 MYH16Q9H6N6 1097 aa22.26■■□□□ 1.15
SCARF1-205ENST00000571272 AAMPQ13685 434 aa22.25■■□□□ 1.15
SCARF1-205ENST00000571272 TSR2Q969E8 191 aaKnown RBP22.25■■□□□ 1.15
SCARF1-205ENST00000571272 MYO3AQ8NEV4 1616 aa22.25■■□□□ 1.15
SCARF1-205ENST00000571272 IFT172Q9UG01 1749 aa22.25■■□□□ 1.15
SCARF1-205ENST00000571272 FTSJ3Q8IY81 847 aaKnown RBP22.25■■□□□ 1.15
SCARF1-205ENST00000571272 ANTXR1Q9H6X2 564 aa22.25■■□□□ 1.15
SCARF1-205ENST00000571272 GGT6Q6P531 493 aa22.24■■□□□ 1.15
SCARF1-205ENST00000571272 SENP3Q9H4L4 574 aaPredicted RBP22.24■■□□□ 1.15
SCARF1-205ENST00000571272 MVPQ14764 893 aaKnown RBP22.24■■□□□ 1.15
SCARF1-205ENST00000571272 ZNF518AQ6AHZ1 1483 aa22.24■■□□□ 1.15
SCARF1-205ENST00000571272 CCDC27Q2M243 656 aa22.24■■□□□ 1.15
SCARF1-205ENST00000571272 PPRC1Q5VV67 1664 aaKnown RBP22.24■■□□□ 1.15
SCARF1-205ENST00000571272 SAFB2Q14151 953 aaKnown RBP eCLIP22.23■■□□□ 1.15
SCARF1-205ENST00000571272 ZKSCAN2Q63HK3 967 aa22.22■■□□□ 1.15
SCARF1-205ENST00000571272 ABCA9Q8IUA7 1624 aa22.22■■□□□ 1.15
SCARF1-205ENST00000571272 DZIP1LQ8IYY4 767 aaKnown RBP22.21■■□□□ 1.15
SCARF1-205ENST00000571272 ARXQ96QS3 562 aa22.2■■□□□ 1.14
SCARF1-205ENST00000571272 CABP2Q9NPB3 220 aa22.2■■□□□ 1.14
SCARF1-205ENST00000571272 QRICH2Q9H0J4 1663 aa22.2■■□□□ 1.14
SCARF1-205ENST00000571272 SMC4Q9NTJ3 1288 aa22.2■■□□□ 1.14
SCARF1-205ENST00000571272 U2SURPO15042 1029 aaKnown RBP22.19■■□□□ 1.14
SCARF1-205ENST00000571272 ADGRB3O60242 1522 aa22.19■■□□□ 1.14
SCARF1-205ENST00000571272 SETBP1Q9Y6X0 1596 aa22.19■■□□□ 1.14
SCARF1-205ENST00000571272 EXOSC9Q06265 439 aaKnown RBP22.18■■□□□ 1.14
SCARF1-205ENST00000571272 MFAP1P55081 439 aaKnown RBP22.17■■□□□ 1.14
SCARF1-205ENST00000571272 NPATQ14207 1427 aa22.17■■□□□ 1.14
SCARF1-205ENST00000571272 EVC2Q86UK5 1308 aa22.17■■□□□ 1.14
SCARF1-205ENST00000571272 ADGRB1O14514 1584 aa22.16■■□□□ 1.14
SCARF1-205ENST00000571272 ITPRIPQ8IWB1 547 aa22.16■■□□□ 1.14
SCARF1-205ENST00000571272 TRIM27P14373 513 aa22.16■■□□□ 1.14
SCARF1-205ENST00000571272 PRKCSHP14314 528 aaPredicted RBP22.14■■□□□ 1.14
SCARF1-205ENST00000571272 SSH1Q8WYL5 1049 aa22.14■■□□□ 1.14
SCARF1-205ENST00000571272 C22orf23Q9BZE7 217 aa22.14■■□□□ 1.14
SCARF1-205ENST00000571272 KIDINS220Q9ULH0 1771 aa22.14■■□□□ 1.14
SCARF1-205ENST00000571272 ZMYM3Q14202 1370 aa22.14■■□□□ 1.13
SCARF1-205ENST00000571272 GGNBP2Q9H3C7 697 aa22.13■■□□□ 1.13
SCARF1-205ENST00000571272 ANKRD36BQ8N2N9 1353 aa22.13■■□□□ 1.13
SCARF1-205ENST00000571272 ZC3H13Q5T200 1668 aaKnown RBP22.13■■□□□ 1.13
SCARF1-205ENST00000571272 EIF5BO60841 1220 aaKnown RBP22.13■■□□□ 1.13
SCARF1-205ENST00000571272 FAM43AQ8N2R8 423 aa22.13■■□□□ 1.13
SCARF1-205ENST00000571272 TMPOP42166 694 aaKnown RBP22.12■■□□□ 1.13
SCARF1-205ENST00000571272 GZF1Q9H116 711 aaPredicted RBP22.12■■□□□ 1.13
SCARF1-205ENST00000571272 STK26Q9P289 416 aa22.11■■□□□ 1.13
SCARF1-205ENST00000571272 NOB1Q9ULX3 412 aaKnown RBP22.11■■□□□ 1.13
SCARF1-205ENST00000571272 TRIM35Q9UPQ4 493 aa22.11■■□□□ 1.13
SCARF1-205ENST00000571272 LMTK2Q8IWU2 1503 aa22.11■■□□□ 1.13
SCARF1-205ENST00000571272 PPLO60437 1756 aa22.1■■□□□ 1.13
SCARF1-205ENST00000571272 ATF7IPQ6VMQ6 1270 aa22.09■■□□□ 1.13
SCARF1-205ENST00000571272 SRPK2P78362 688 aaKnown RBP22.09■■□□□ 1.13
SCARF1-205ENST00000571272 ASXL2Q76L83 1435 aa22.09■■□□□ 1.13
SCARF1-205ENST00000571272 PLEKHF1Q96S99 279 aa22.09■■□□□ 1.13
SCARF1-205ENST00000571272 DDX19BQ9UMR2 479 aa22.09■■□□□ 1.13
SCARF1-205ENST00000571272 CD109Q6YHK3 1445 aa22.09■■□□□ 1.13
SCARF1-205ENST00000571272 TULP4Q9NRJ4 1543 aa22.08■■□□□ 1.13
SCARF1-205ENST00000571272 RPGRIP1LQ68CZ1 1315 aa22.08■■□□□ 1.13
SCARF1-205ENST00000571272 USP32Q8NFA0 1604 aa22.08■■□□□ 1.12
SCARF1-205ENST00000571272 MCM4P33991 863 aa22.08■■□□□ 1.12
SCARF1-205ENST00000571272 L1TD1Q5T7N2 865 aaKnown RBP22.08■■□□□ 1.12
SCARF1-205ENST00000571272 TMEM57Q8N5G2 664 aa22.08■■□□□ 1.12
SCARF1-205ENST00000571272 CT47B1P0C2W7 299 aaPredicted RBP22.07■■□□□ 1.12
SCARF1-205ENST00000571272 HDAC1Q13547 482 aaPredicted RBP22.07■■□□□ 1.12
SCARF1-205ENST00000571272 NSD2O96028 1365 aa22.07■■□□□ 1.12
SCARF1-205ENST00000571272 NCBP3Q53F19 620 aaKnown RBP22.07■■□□□ 1.12
SCARF1-205ENST00000571272 A0A1W2PP64 1363 aa22.06■■□□□ 1.12
SCARF1-205ENST00000571272 VGFO15240 615 aaPredicted RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms