RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 TOM1O60784 492 aa13.36□□□□□ -0.27
VPS35-206ENST00000565228 HSPA1LP34931 641 aa13.36□□□□□ -0.27
VPS35-206ENST00000565228 TRAK1Q9UPV9 953 aa13.36□□□□□ -0.27
VPS35-206ENST00000565228 SRCAPQ6ZRS2 3230 aa13.35□□□□□ -0.27
VPS35-206ENST00000565228 STAC3Q96MF2 364 aa13.35□□□□□ -0.27
VPS35-206ENST00000565228 FAM135BQ49AJ0 1406 aa13.35□□□□□ -0.27
VPS35-206ENST00000565228 SAFB2Q14151 953 aaKnown RBP eCLIP13.34□□□□□ -0.27
VPS35-206ENST00000565228 PRAM1Q96QH2 718 aa13.34□□□□□ -0.27
VPS35-206ENST00000565228 SLAIN2Q9P270 581 aa13.34□□□□□ -0.27
VPS35-206ENST00000565228 RGPD8O14715 1765 aaPredicted RBP13.34□□□□□ -0.27
VPS35-206ENST00000565228 SIRT1Q96EB6 747 aa13.33□□□□□ -0.28
VPS35-206ENST00000565228 SCAF1Q9H7N4 1312 aaKnown RBP13.33□□□□□ -0.28
VPS35-206ENST00000565228 USP32Q8NFA0 1604 aa13.32□□□□□ -0.28
VPS35-206ENST00000565228 DCCP43146 1447 aa13.32□□□□□ -0.28
VPS35-206ENST00000565228 C14orf37Q86TY3 774 aa13.32□□□□□ -0.28
VPS35-206ENST00000565228 DDX17Q92841 729 aaKnown RBP13.32□□□□□ -0.28
VPS35-206ENST00000565228 FMN2Q9NZ56 1722 aa13.32□□□□□ -0.28
VPS35-206ENST00000565228 CDC42BPGQ6DT37 1551 aa13.32□□□□□ -0.28
VPS35-206ENST00000565228 C1orf167Q5SNV9 1468 aa13.31□□□□□ -0.28
VPS35-206ENST00000565228 BRINP3Q76B58 766 aa13.31□□□□□ -0.28
VPS35-206ENST00000565228 TONSLQ96HA7 1378 aa13.31□□□□□ -0.28
VPS35-206ENST00000565228 ORAI2Q96SN7 254 aa13.3□□□□□ -0.28
VPS35-206ENST00000565228 GPRASP1Q5JY77 1395 aa13.3□□□□□ -0.28
VPS35-206ENST00000565228 ADGRB2O60241 1585 aa13.29□□□□□ -0.28
VPS35-206ENST00000565228 NUTM2FA1L443 756 aa13.29□□□□□ -0.28
VPS35-206ENST00000565228 CADPS2Q86UW7 1296 aa13.29□□□□□ -0.28
VPS35-206ENST00000565228 HIRIP3Q9BW71 556 aaPredicted RBP13.29□□□□□ -0.28
VPS35-206ENST00000565228 COL16A1Q07092 1604 aaPredicted RBP13.28□□□□□ -0.28
VPS35-206ENST00000565228 ATF3P18847 181 aa13.28□□□□□ -0.28
VPS35-206ENST00000565228 MINK1Q8N4C8 1332 aaPredicted RBP13.28□□□□□ -0.28
VPS35-206ENST00000565228 PRR36Q9H6K5 1346 aa13.28□□□□□ -0.28
VPS35-206ENST00000565228 RALGAPBQ86X10 1494 aa13.28□□□□□ -0.28
VPS35-206ENST00000565228 NHSL1Q5SYE7 1610 aa13.28□□□□□ -0.28
VPS35-206ENST00000565228 CCER1Q8TC90 406 aaPredicted RBP13.27□□□□□ -0.29
VPS35-206ENST00000565228 CLSPNQ9HAW4 1339 aa13.27□□□□□ -0.29
VPS35-206ENST00000565228 PHLPP1O60346 1717 aa13.27□□□□□ -0.29
VPS35-206ENST00000565228 AHDC1Q5TGY3 1603 aaPredicted RBP13.26□□□□□ -0.29
VPS35-206ENST00000565228 QRICH2Q9H0J4 1663 aa13.25□□□□□ -0.29
VPS35-206ENST00000565228 ROCK2O75116 1388 aaKnown RBP13.25□□□□□ -0.29
VPS35-206ENST00000565228 POGKQ9P215 609 aa13.25□□□□□ -0.29
VPS35-206ENST00000565228 TULP4Q9NRJ4 1543 aa13.24□□□□□ -0.29
VPS35-206ENST00000565228 WASLO00401 505 aaPredicted RBP13.22□□□□□ -0.29
VPS35-206ENST00000565228 ATP7BP35670 1465 aa13.22□□□□□ -0.29
VPS35-206ENST00000565228 PXDNQ92626 1479 aa13.21□□□□□ -0.3
VPS35-206ENST00000565228 CENPJQ9HC77 1338 aaPredicted RBP13.2□□□□□ -0.3
VPS35-206ENST00000565228 XPCQ01831 940 aaPredicted RBP13.2□□□□□ -0.3
VPS35-206ENST00000565228 CDK19Q9BWU1 502 aa13.2□□□□□ -0.3
VPS35-206ENST00000565228 TOPAZ1Q8N9V7 1692 aa13.2□□□□□ -0.3
VPS35-206ENST00000565228 ESCO1Q5FWF5 840 aa13.19□□□□□ -0.3
VPS35-206ENST00000565228 CARD11Q9BXL7 1154 aa13.19□□□□□ -0.3
VPS35-206ENST00000565228 SOS2Q07890 1332 aaPredicted RBP13.18□□□□□ -0.3
VPS35-206ENST00000565228 LRP6O75581 1613 aa13.18□□□□□ -0.3
VPS35-206ENST00000565228 FOXO3O43524 673 aa13.18□□□□□ -0.3
VPS35-206ENST00000565228 ANKARQ7Z5J8 1434 aa13.17□□□□□ -0.3
VPS35-206ENST00000565228 PMFBP1Q8TBY8 1022 aa13.17□□□□□ -0.3
VPS35-206ENST00000565228 TESK2Q96S53 571 aa13.17□□□□□ -0.3
VPS35-206ENST00000565228 CABP2Q9NPB3 220 aa13.17□□□□□ -0.3
VPS35-206ENST00000565228 TIMELESSQ9UNS1 1208 aa13.17□□□□□ -0.3
VPS35-206ENST00000565228 TRPM3Q9HCF6 1732 aaPredicted RBP13.16□□□□□ -0.3
VPS35-206ENST00000565228 NUDT16Q96DE0 195 aaKnown RBP13.16□□□□□ -0.3
VPS35-206ENST00000565228 KIF1AQ12756 1690 aa13.15□□□□□ -0.3
VPS35-206ENST00000565228 SHPRHQ149N8 1683 aa13.15□□□□□ -0.3
VPS35-206ENST00000565228 ST20-MTHFSA0A0A6YYL1 179 aa13.15□□□□□ -0.3
VPS35-206ENST00000565228 PHF8Q9UPP1 1060 aa13.15□□□□□ -0.3
VPS35-206ENST00000565228 PNPLA6Q8IY17 1366 aa13.15□□□□□ -0.3
VPS35-206ENST00000565228 RGS17Q9UGC6 210 aaPredicted RBP13.14□□□□□ -0.31
VPS35-206ENST00000565228 USP47Q96K76 1375 aa13.12□□□□□ -0.31
VPS35-206ENST00000565228 JCADQ9P266 1359 aa13.12□□□□□ -0.31
VPS35-206ENST00000565228 SBNO2Q9Y2G9 1366 aa13.12□□□□□ -0.31
VPS35-206ENST00000565228 ITSN1Q15811 1721 aa13.11□□□□□ -0.31
VPS35-206ENST00000565228 COL22A1Q8NFW1 1626 aaPredicted RBP13.11□□□□□ -0.31
VPS35-206ENST00000565228 KRT28Q7Z3Y7 464 aa13.11□□□□□ -0.31
VPS35-206ENST00000565228 ALS2Q96Q42 1657 aa13.11□□□□□ -0.31
VPS35-206ENST00000565228 CD163L1Q9NR16 1453 aa13.1□□□□□ -0.31
VPS35-206ENST00000565228 PLEKHG3A1L390 1219 aa13.1□□□□□ -0.31
VPS35-206ENST00000565228 SPATA31A3Q5VYP0 1347 aa13.1□□□□□ -0.31
VPS35-206ENST00000565228 NPHP3Q7Z494 1330 aa13.1□□□□□ -0.31
VPS35-206ENST00000565228 POLR3AO14802 1390 aaPredicted RBP13.09□□□□□ -0.31
VPS35-206ENST00000565228 SRPK2P78362 688 aaKnown RBP13.09□□□□□ -0.31
VPS35-206ENST00000565228 PPIP5K1Q6PFW1 1433 aa13.09□□□□□ -0.31
VPS35-206ENST00000565228 CRYBG1Q9Y4K1 1723 aa13.09□□□□□ -0.31
VPS35-206ENST00000565228 CCDC61Q9Y6R9 512 aa13.09□□□□□ -0.31
VPS35-206ENST00000565228 ACEP12821 1306 aa13.09□□□□□ -0.31
VPS35-206ENST00000565228 EIF3AQ14152 1382 aaKnown RBP13.08□□□□□ -0.31
VPS35-206ENST00000565228 LRRC59Q96AG4 307 aaKnown RBP13.08□□□□□ -0.32
VPS35-206ENST00000565228 CABP1Q9NZU7 370 aa13.08□□□□□ -0.32
VPS35-206ENST00000565228 ABCA3Q99758 1704 aa13.08□□□□□ -0.32
VPS35-206ENST00000565228 AKAP12Q02952 1782 aa13.07□□□□□ -0.32
VPS35-206ENST00000565228 SSH2Q76I76 1423 aa13.07□□□□□ -0.32
VPS35-206ENST00000565228 EVC2Q86UK5 1308 aa13.07□□□□□ -0.32
VPS35-206ENST00000565228 MARF1Q9Y4F3 1742 aaKnown RBP13.06□□□□□ -0.32
VPS35-206ENST00000565228 C11orf95C9JLR9 678 aaPredicted RBP13.06□□□□□ -0.32
VPS35-206ENST00000565228 CABLES1Q8TDN4 633 aa13.06□□□□□ -0.32
VPS35-206ENST00000565228 SBNO1A3KN83 1393 aa13.06□□□□□ -0.32
VPS35-206ENST00000565228 TNS3Q68CZ2 1445 aa13.05□□□□□ -0.32
VPS35-206ENST00000565228 NUTM2BA6NNL0 878 aaPredicted RBP13.05□□□□□ -0.32
VPS35-206ENST00000565228 NUTM2EB1AL46 878 aaPredicted RBP13.05□□□□□ -0.32
VPS35-206ENST00000565228 HSPA5P11021 654 aaKnown RBP13.05□□□□□ -0.32
VPS35-206ENST00000565228 NUTM2AQ8IVF1 878 aaPredicted RBP13.05□□□□□ -0.32
VPS35-206ENST00000565228 CPSF1Q10570 1443 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms