RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 LORP23490 312 aaPredicted RBP13.38□□□□□ -0.27
SPG11-213ENST00000558988 E2F4Q16254 413 aa13.38□□□□□ -0.27
SPG11-213ENST00000558988 PRDM2Q13029 1718 aa13.37□□□□□ -0.27
SPG11-213ENST00000558988 SLC10A3P09131 477 aa13.36□□□□□ -0.27
SPG11-213ENST00000558988 SENP2Q9HC62 589 aa13.36□□□□□ -0.27
SPG11-213ENST00000558988 ZSCAN1Q8NBB4 408 aa13.35□□□□□ -0.27
SPG11-213ENST00000558988 FCF1Q9Y324 198 aaKnown RBP13.34□□□□□ -0.27
SPG11-213ENST00000558988 SMPD1P17405 629 aa13.33□□□□□ -0.28
SPG11-213ENST00000558988 PUS10Q3MIT2 529 aaKnown RBP13.33□□□□□ -0.28
SPG11-213ENST00000558988 RBM46Q8TBY0 533 aaKnown RBP13.33□□□□□ -0.28
SPG11-213ENST00000558988 GMPRP36959 345 aa13.32□□□□□ -0.28
SPG11-213ENST00000558988 RCCD1A6NED2 376 aa13.31□□□□□ -0.28
SPG11-213ENST00000558988 SLC16A10Q8TF71 515 aa13.3□□□□□ -0.28
SPG11-213ENST00000558988 ADGRG1Q9Y653 693 aa13.28□□□□□ -0.28
SPG11-213ENST00000558988 TOPBP1Q92547 1522 aa13.27□□□□□ -0.29
SPG11-213ENST00000558988 SNIP1Q8TAD8 396 aaKnown RBP13.26□□□□□ -0.29
SPG11-213ENST00000558988 KIFC2Q96AC6 838 aa13.26□□□□□ -0.29
SPG11-213ENST00000558988 SUPT5HO00267 1087 aaKnown RBP13.25□□□□□ -0.29
SPG11-213ENST00000558988 FAM161AQ3B820 660 aa13.25□□□□□ -0.29
SPG11-213ENST00000558988 ZNF608Q9ULD9 1512 aaPredicted RBP13.24□□□□□ -0.29
SPG11-213ENST00000558988 J3QL48 77 aa13.24□□□□□ -0.29
SPG11-213ENST00000558988 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
SPG11-213ENST00000558988 NXF1Q9UBU9 619 aaKnown RBP13.22□□□□□ -0.29
SPG11-213ENST00000558988 DNMBPQ6XZF7 1577 aa13.21□□□□□ -0.29
SPG11-213ENST00000558988 WNT7AO00755 349 aa13.21□□□□□ -0.29
SPG11-213ENST00000558988 HPS1Q92902 700 aa13.21□□□□□ -0.29
SPG11-213ENST00000558988 FAM160A2Q8N612 972 aaPredicted RBP13.2□□□□□ -0.3
SPG11-213ENST00000558988 IRF7Q92985 503 aa13.19□□□□□ -0.3
SPG11-213ENST00000558988 ABCC8Q09428 1581 aa13.19□□□□□ -0.3
SPG11-213ENST00000558988 ZBTB24O43167 697 aaPredicted RBP13.18□□□□□ -0.3
SPG11-213ENST00000558988 PTGDRQ13258 359 aa13.18□□□□□ -0.3
SPG11-213ENST00000558988 THAP11Q96EK4 314 aa13.18□□□□□ -0.3
SPG11-213ENST00000558988 EIF4G3O43432 1585 aaKnown RBP13.16□□□□□ -0.3
SPG11-213ENST00000558988 VEGFBP49765 207 aa13.16□□□□□ -0.3
SPG11-213ENST00000558988 MRGPRX2Q96LB1 330 aa13.16□□□□□ -0.3
SPG11-213ENST00000558988 PRDM9Q9NQV7 894 aa13.16□□□□□ -0.3
SPG11-213ENST00000558988 AQRO60306 1485 aaKnown RBP eCLIP13.13□□□□□ -0.31
SPG11-213ENST00000558988 POLA1P09884 1462 aaPredicted RBP13.13□□□□□ -0.31
SPG11-213ENST00000558988 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.13□□□□□ -0.31
SPG11-213ENST00000558988 MORN1Q5T089 497 aa13.13□□□□□ -0.31
SPG11-213ENST00000558988 RAD54L2Q9Y4B4 1467 aa13.12□□□□□ -0.31
SPG11-213ENST00000558988 WDR70Q9NW82 654 aa13.12□□□□□ -0.31
SPG11-213ENST00000558988 NPAS3Q8IXF0 933 aa13.11□□□□□ -0.31
SPG11-213ENST00000558988 ERBB4Q15303 1308 aa13.11□□□□□ -0.31
SPG11-213ENST00000558988 TARBP1Q13395 1621 aaKnown RBP13.1□□□□□ -0.31
SPG11-213ENST00000558988 FMNL1O95466 1100 aaPredicted RBP13.1□□□□□ -0.31
SPG11-213ENST00000558988 TDRD9Q8NDG6 1382 aaKnown RBP13.09□□□□□ -0.31
SPG11-213ENST00000558988 SOGA1O94964 1423 aa13.09□□□□□ -0.31
SPG11-213ENST00000558988 TRIM32Q13049 653 aa13.09□□□□□ -0.31
SPG11-213ENST00000558988 RSPH4AQ5TD94 716 aa13.09□□□□□ -0.31
SPG11-213ENST00000558988 KCTD17Q8N5Z5 321 aa13.09□□□□□ -0.31
SPG11-213ENST00000558988 FGD5Q6ZNL6 1462 aa13.09□□□□□ -0.31
SPG11-213ENST00000558988 H3BM21 787 aa13.08□□□□□ -0.32
SPG11-213ENST00000558988 CHD1O14646 1710 aa13.07□□□□□ -0.32
SPG11-213ENST00000558988 CUX1P39880 1505 aa13.07□□□□□ -0.32
SPG11-213ENST00000558988 MLLT3P42568 568 aaPredicted RBP13.06□□□□□ -0.32
SPG11-213ENST00000558988 SLC27A5Q9Y2P5 690 aa13.06□□□□□ -0.32
SPG11-213ENST00000558988 FUT2Q10981 343 aa13.05□□□□□ -0.32
SPG11-213ENST00000558988 RIMBP3CA6NJZ7 1639 aa13.05□□□□□ -0.32
SPG11-213ENST00000558988 RIMBP3BA6NNM3 1639 aa13.05□□□□□ -0.32
SPG11-213ENST00000558988 RIMBP3Q9UFD9 1639 aa13.05□□□□□ -0.32
SPG11-213ENST00000558988 PXYLP1Q8TE99 480 aa13.02□□□□□ -0.33
SPG11-213ENST00000558988 FECHP22830 423 aa13.01□□□□□ -0.33
SPG11-213ENST00000558988 ATP6V1AP38606 617 aa13.01□□□□□ -0.33
SPG11-213ENST00000558988 BRICD5Q6PL45 260 aa13.01□□□□□ -0.33
SPG11-213ENST00000558988 REPIN1Q9BWE0 567 aaKnown RBP13.01□□□□□ -0.33
SPG11-213ENST00000558988 SNAPC4Q5SXM2 1469 aa13.01□□□□□ -0.33
SPG11-213ENST00000558988 ARHGEF11O15085 1522 aa13.01□□□□□ -0.33
SPG11-213ENST00000558988 BMP1P13497 986 aa13□□□□□ -0.33
SPG11-213ENST00000558988 GSK3AP49840 483 aa13□□□□□ -0.33
SPG11-213ENST00000558988 KCNMA1Q12791 1236 aa13□□□□□ -0.33
SPG11-213ENST00000558988 TRIM46Q7Z4K8 759 aa13□□□□□ -0.33
SPG11-213ENST00000558988 SALL2Q9Y467 1007 aaPredicted RBP13□□□□□ -0.33
SPG11-213ENST00000558988 MSS51Q4VC12 460 aa12.99□□□□□ -0.33
SPG11-213ENST00000558988 RDH13Q8NBN7 331 aa12.98□□□□□ -0.33
SPG11-213ENST00000558988 NUTM2FA1L443 756 aa12.97□□□□□ -0.33
SPG11-213ENST00000558988 CHMP7Q8WUX9 453 aaPredicted RBP12.97□□□□□ -0.33
SPG11-213ENST00000558988 OATP04181 439 aa12.96□□□□□ -0.33
SPG11-213ENST00000558988 RC3H1Q5TC82 1133 aaKnown RBP12.96□□□□□ -0.33
SPG11-213ENST00000558988 CYB5RLQ6IPT4 315 aa12.96□□□□□ -0.33
SPG11-213ENST00000558988 RNF19BQ6ZMZ0 732 aa12.96□□□□□ -0.33
SPG11-213ENST00000558988 GRIN2BQ13224 1484 aa12.95□□□□□ -0.34
SPG11-213ENST00000558988 WDR97A6NE52 1622 aa12.94□□□□□ -0.34
SPG11-213ENST00000558988 ALDH1A1P00352 501 aa12.93□□□□□ -0.34
SPG11-213ENST00000558988 PBRM1Q86U86 1689 aa12.93□□□□□ -0.34
SPG11-213ENST00000558988 GAPVD1Q14C86 1478 aa12.92□□□□□ -0.34
SPG11-213ENST00000558988 MAGI1Q96QZ7 1491 aaPredicted RBP12.92□□□□□ -0.34
SPG11-213ENST00000558988 SKOR1P84550 965 aa12.92□□□□□ -0.34
SPG11-213ENST00000558988 BBXQ8WY36 941 aaPredicted RBP12.92□□□□□ -0.34
SPG11-213ENST00000558988 METTL3Q86U44 580 aaKnown RBP12.91□□□□□ -0.34
SPG11-213ENST00000558988 SYNJ1O43426 1573 aa12.9□□□□□ -0.35
SPG11-213ENST00000558988 WRNQ14191 1432 aaPredicted RBP eCLIP12.89□□□□□ -0.35
SPG11-213ENST00000558988 ABCA10Q8WWZ4 1543 aa12.89□□□□□ -0.35
SPG11-213ENST00000558988 CAPN5O15484 640 aaPredicted RBP12.89□□□□□ -0.35
SPG11-213ENST00000558988 MMP16P51512 607 aa12.89□□□□□ -0.35
SPG11-213ENST00000558988 SYNJ2O15056 1496 aa12.89□□□□□ -0.35
SPG11-213ENST00000558988 ARAP1Q96P48 1450 aa12.89□□□□□ -0.35
SPG11-213ENST00000558988 DDX11L8A8MPP1 907 aa12.88□□□□□ -0.35
SPG11-213ENST00000558988 FCHSD2O94868 740 aa12.88□□□□□ -0.35
SPG11-213ENST00000558988 TMEM151AQ8N4L1 468 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 159.4 ms