RNA–Protein interactions for RNA: ENST00000558879.5

LRRC28-210, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4 BASIC

Gene LRRC28, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-210ENST00000558879 COL22A1Q8NFW1 1626 aaPredicted RBP25.08■■□□□ 1.61
LRRC28-210ENST00000558879 KIF1AQ12756 1690 aa25.08■■□□□ 1.61
LRRC28-210ENST00000558879 C14orf93Q9H972 538 aaKnown RBP25.08■■□□□ 1.61
LRRC28-210ENST00000558879 PLEKHH1Q9ULM0 1364 aa25.06■■□□□ 1.6
LRRC28-210ENST00000558879 ADGRB2O60241 1585 aa25.06■■□□□ 1.6
LRRC28-210ENST00000558879 TMEM132EQ6IEE7 984 aa25.06■■□□□ 1.6
LRRC28-210ENST00000558879 ARHGEF28Q8N1W1 1705 aaKnown RBP25.04■■□□□ 1.6
LRRC28-210ENST00000558879 KIAA1210Q9ULL0 1709 aa25.04■■□□□ 1.6
LRRC28-210ENST00000558879 PNPLA6Q8IY17 1366 aa25.04■■□□□ 1.6
LRRC28-210ENST00000558879 MARF1Q9Y4F3 1742 aaKnown RBP25.03■■□□□ 1.6
LRRC28-210ENST00000558879 CFAP70Q5T0N1 1121 aa25.02■■□□□ 1.6
LRRC28-210ENST00000558879 DDX17Q92841 729 aaKnown RBP25.02■■□□□ 1.6
LRRC28-210ENST00000558879 STK26Q9P289 416 aa25.02■■□□□ 1.6
LRRC28-210ENST00000558879 WAPLQ7Z5K2 1190 aa25.01■■□□□ 1.59
LRRC28-210ENST00000558879 DHX57Q6P158 1386 aaKnown RBP25.01■■□□□ 1.59
LRRC28-210ENST00000558879 PXDNQ92626 1479 aa25.01■■□□□ 1.59
LRRC28-210ENST00000558879 USP32Q8NFA0 1604 aa25.01■■□□□ 1.59
LRRC28-210ENST00000558879 POTEAQ6S8J7 498 aa25■■□□□ 1.59
LRRC28-210ENST00000558879 SIRT1Q96EB6 747 aa25■■□□□ 1.59
LRRC28-210ENST00000558879 ORAI2Q96SN7 254 aa25■■□□□ 1.59
LRRC28-210ENST00000558879 SOS2Q07890 1332 aaPredicted RBP25■■□□□ 1.59
LRRC28-210ENST00000558879 LRRC59Q96AG4 307 aaKnown RBP24.99■■□□□ 1.59
LRRC28-210ENST00000558879 STAC3Q96MF2 364 aa24.94■■□□□ 1.58
LRRC28-210ENST00000558879 NPHP3Q7Z494 1330 aa24.91■■□□□ 1.58
LRRC28-210ENST00000558879 MEX3CQ5U5Q3 659 aaKnown RBP24.91■■□□□ 1.58
LRRC28-210ENST00000558879 DCAF11Q8TEB1 546 aa24.91■■□□□ 1.58
LRRC28-210ENST00000558879 ABCA3Q99758 1704 aa24.91■■□□□ 1.58
LRRC28-210ENST00000558879 ITSN1Q15811 1721 aa24.89■■□□□ 1.58
LRRC28-210ENST00000558879 ESCO1Q5FWF5 840 aa24.89■■□□□ 1.58
LRRC28-210ENST00000558879 ANKARQ7Z5J8 1434 aa24.87■■□□□ 1.57
LRRC28-210ENST00000558879 NUTM2BA6NNL0 878 aaPredicted RBP24.87■■□□□ 1.57
LRRC28-210ENST00000558879 NUTM2EB1AL46 878 aaPredicted RBP24.87■■□□□ 1.57
LRRC28-210ENST00000558879 NUTM2AQ8IVF1 878 aaPredicted RBP24.87■■□□□ 1.57
LRRC28-210ENST00000558879 PRAM1Q96QH2 718 aa24.87■■□□□ 1.57
LRRC28-210ENST00000558879 TRPM3Q9HCF6 1732 aaPredicted RBP24.86■■□□□ 1.57
LRRC28-210ENST00000558879 ZNF772Q68DY9 489 aaPredicted RBP24.86■■□□□ 1.57
LRRC28-210ENST00000558879 KDM2AQ9Y2K7 1162 aa24.86■■□□□ 1.57
LRRC28-210ENST00000558879 TULP4Q9NRJ4 1543 aa24.85■■□□□ 1.57
LRRC28-210ENST00000558879 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.84■■□□□ 1.57
LRRC28-210ENST00000558879 NUTM2FA1L443 756 aa24.84■■□□□ 1.57
LRRC28-210ENST00000558879 TOPAZ1Q8N9V7 1692 aa24.83■■□□□ 1.57
LRRC28-210ENST00000558879 CDK12Q9NYV4 1490 aaPredicted RBP24.83■■□□□ 1.56
LRRC28-210ENST00000558879 AFF2P51816 1311 aa24.82■■□□□ 1.56
LRRC28-210ENST00000558879 FOXO3O43524 673 aa24.81■■□□□ 1.56
LRRC28-210ENST00000558879 ALS2Q96Q42 1657 aa24.81■■□□□ 1.56
LRRC28-210ENST00000558879 TRPM1Q7Z4N2 1603 aa24.8■■□□□ 1.56
LRRC28-210ENST00000558879 SAFB2Q14151 953 aaKnown RBP eCLIP24.8■■□□□ 1.56
LRRC28-210ENST00000558879 TRAK1Q9UPV9 953 aa24.8■■□□□ 1.56
LRRC28-210ENST00000558879 CRYBG1Q9Y4K1 1723 aa24.78■■□□□ 1.56
LRRC28-210ENST00000558879 POGKQ9P215 609 aa24.78■■□□□ 1.56
LRRC28-210ENST00000558879 XPCQ01831 940 aaPredicted RBP24.77■■□□□ 1.56
LRRC28-210ENST00000558879 EIF3AQ14152 1382 aaKnown RBP24.77■■□□□ 1.56
LRRC28-210ENST00000558879 TNS3Q68CZ2 1445 aa24.77■■□□□ 1.56
LRRC28-210ENST00000558879 QRICH2Q9H0J4 1663 aa24.76■■□□□ 1.55
LRRC28-210ENST00000558879 C8orf37Q96NL8 207 aa24.76■■□□□ 1.55
LRRC28-210ENST00000558879 ATP7BP35670 1465 aa24.76■■□□□ 1.55
LRRC28-210ENST00000558879 PLCH1Q4KWH8 1693 aa24.75■■□□□ 1.55
LRRC28-210ENST00000558879 PHF8Q9UPP1 1060 aa24.75■■□□□ 1.55
LRRC28-210ENST00000558879 SPATA31A3Q5VYP0 1347 aa24.74■■□□□ 1.55
LRRC28-210ENST00000558879 NWD2Q9ULI1 1742 aa24.73■■□□□ 1.55
LRRC28-210ENST00000558879 SBNO1A3KN83 1393 aa24.72■■□□□ 1.55
LRRC28-210ENST00000558879 MINK1Q8N4C8 1332 aaPredicted RBP24.72■■□□□ 1.55
LRRC28-210ENST00000558879 PRR36Q9H6K5 1346 aa24.72■■□□□ 1.55
LRRC28-210ENST00000558879 ADAMTS2O95450 1211 aa24.72■■□□□ 1.55
LRRC28-210ENST00000558879 RGS12O14924 1447 aa24.7■■□□□ 1.55
LRRC28-210ENST00000558879 HIRIP3Q9BW71 556 aaPredicted RBP24.7■■□□□ 1.54
LRRC28-210ENST00000558879 RXRBP28702 533 aa24.69■■□□□ 1.54
LRRC28-210ENST00000558879 KRT28Q7Z3Y7 464 aa24.69■■□□□ 1.54
LRRC28-210ENST00000558879 ATRNO75882 1429 aa24.69■■□□□ 1.54
LRRC28-210ENST00000558879 WASLO00401 505 aaPredicted RBP24.68■■□□□ 1.54
LRRC28-210ENST00000558879 FNBP4Q8N3X1 1017 aaPredicted RBP24.67■■□□□ 1.54
LRRC28-210ENST00000558879 NGLY1Q96IV0 654 aa24.67■■□□□ 1.54
LRRC28-210ENST00000558879 BCL9LQ86UU0 1499 aa24.66■■□□□ 1.54
LRRC28-210ENST00000558879 NRAPQ86VF7 1730 aa24.66■■□□□ 1.54
LRRC28-210ENST00000558879 SLIT2O94813 1529 aa24.66■■□□□ 1.54
LRRC28-210ENST00000558879 ARHGEF10O15013 1369 aa24.65■■□□□ 1.54
LRRC28-210ENST00000558879 PHRF1Q9P1Y6 1649 aaKnown RBP24.64■■□□□ 1.54
LRRC28-210ENST00000558879 NBPF1Q3BBV0 1214 aa24.64■■□□□ 1.54
LRRC28-210ENST00000558879 RBM6P78332 1123 aaKnown RBP24.63■■□□□ 1.53
LRRC28-210ENST00000558879 PSME1Q06323 249 aa24.63■■□□□ 1.53
LRRC28-210ENST00000558879 PMFBP1Q8TBY8 1022 aa24.63■■□□□ 1.53
LRRC28-210ENST00000558879 QTRT2Q9H974 415 aaKnown RBP24.63■■□□□ 1.53
LRRC28-210ENST00000558879 USP21Q9UK80 565 aa24.63■■□□□ 1.53
LRRC28-210ENST00000558879 L3MBTL2Q969R5 705 aa24.62■■□□□ 1.53
LRRC28-210ENST00000558879 GLI3P10071 1580 aa24.62■■□□□ 1.53
LRRC28-210ENST00000558879 SIN3AQ96ST3 1273 aa24.61■■□□□ 1.53
LRRC28-210ENST00000558879 TRPC5Q9UL62 973 aaPredicted RBP24.59■■□□□ 1.53
LRRC28-210ENST00000558879 COL14A1Q05707 1796 aaKnown RBP24.59■■□□□ 1.53
LRRC28-210ENST00000558879 BRWD3Q6RI45 1802 aa24.58■■□□□ 1.53
LRRC28-210ENST00000558879 GPRASP1Q5JY77 1395 aa24.57■■□□□ 1.52
LRRC28-210ENST00000558879 POLR3AO14802 1390 aaPredicted RBP24.55■■□□□ 1.52
LRRC28-210ENST00000558879 CENPJQ9HC77 1338 aaPredicted RBP24.55■■□□□ 1.52
LRRC28-210ENST00000558879 NUDT16Q96DE0 195 aaKnown RBP24.54■■□□□ 1.52
LRRC28-210ENST00000558879 CDK19Q9BWU1 502 aa24.53■■□□□ 1.52
LRRC28-210ENST00000558879 AKAP12Q02952 1782 aa24.52■■□□□ 1.52
LRRC28-210ENST00000558879 CABLES1Q8TDN4 633 aa24.52■■□□□ 1.52
LRRC28-210ENST00000558879 UPF1Q92900 1129 aaKnown RBP eCLIP24.52■■□□□ 1.52
LRRC28-210ENST00000558879 RALGAPBQ86X10 1494 aa24.51■■□□□ 1.51
LRRC28-210ENST00000558879 NRKQ7Z2Y5 1582 aa24.5■■□□□ 1.51
LRRC28-210ENST00000558879 NEUROD1Q13562 356 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms