RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CAMSAP1Q5T5Y3 1602 aa9.69□□□□□ -0.86
VPS13C-206ENST00000558338 PIK3C2GO75747 1445 aa9.69□□□□□ -0.86
VPS13C-206ENST00000558338 UGGT1Q9NYU2 1555 aa9.68□□□□□ -0.86
VPS13C-206ENST00000558338 CC2D1BQ5T0F9 858 aaKnown RBP9.68□□□□□ -0.86
VPS13C-206ENST00000558338 ABCC3O15438 1527 aa9.68□□□□□ -0.86
VPS13C-206ENST00000558338 RPGRIP1LQ68CZ1 1315 aa9.67□□□□□ -0.86
VPS13C-206ENST00000558338 NPATQ14207 1427 aa9.67□□□□□ -0.86
VPS13C-206ENST00000558338 FANCIQ9NVI1 1328 aa9.66□□□□□ -0.86
VPS13C-206ENST00000558338 POTEIP0CG38 1075 aa9.66□□□□□ -0.86
VPS13C-206ENST00000558338 CHADLQ6NUI6 762 aa9.66□□□□□ -0.86
VPS13C-206ENST00000558338 ERVK-7P63135 1459 aa9.66□□□□□ -0.86
VPS13C-206ENST00000558338 DIP2CQ9Y2E4 1556 aa9.66□□□□□ -0.86
VPS13C-206ENST00000558338 PIK3C2BO00750 1634 aa9.65□□□□□ -0.86
VPS13C-206ENST00000558338 RICTORQ6R327 1708 aa9.65□□□□□ -0.86
VPS13C-206ENST00000558338 RRP1P56182 461 aaKnown RBP9.65□□□□□ -0.86
VPS13C-206ENST00000558338 B4GALNT3Q6L9W6 998 aa9.65□□□□□ -0.86
VPS13C-206ENST00000558338 GLI2P10070 1586 aa9.64□□□□□ -0.87
VPS13C-206ENST00000558338 NOS1P29475 1434 aa9.64□□□□□ -0.87
VPS13C-206ENST00000558338 ARHGAP31Q2M1Z3 1444 aa9.64□□□□□ -0.87
VPS13C-206ENST00000558338 WDR43Q15061 677 aaKnown RBP eCLIP9.64□□□□□ -0.87
VPS13C-206ENST00000558338 CCDC136Q96JN2 1154 aa9.64□□□□□ -0.87
VPS13C-206ENST00000558338 RCAN3Q9UKA8 241 aa9.64□□□□□ -0.87
VPS13C-206ENST00000558338 QRICH2Q9H0J4 1663 aa9.64□□□□□ -0.87
VPS13C-206ENST00000558338 PPP2R1AP30153 589 aa9.64□□□□□ -0.87
VPS13C-206ENST00000558338 PAXIP1Q6ZW49 1069 aaPredicted RBP9.64□□□□□ -0.87
VPS13C-206ENST00000558338 ADGRF5Q8IZF2 1346 aa9.63□□□□□ -0.87
VPS13C-206ENST00000558338 CFAP70Q5T0N1 1121 aa9.63□□□□□ -0.87
VPS13C-206ENST00000558338 ANP32EQ9BTT0 268 aa9.63□□□□□ -0.87
VPS13C-206ENST00000558338 USP32Q8NFA0 1604 aa9.63□□□□□ -0.87
VPS13C-206ENST00000558338 NBR1Q14596 966 aa9.62□□□□□ -0.87
VPS13C-206ENST00000558338 SSUH2Q9Y2M2 353 aa9.62□□□□□ -0.87
VPS13C-206ENST00000558338 CENPJQ9HC77 1338 aaPredicted RBP9.62□□□□□ -0.87
VPS13C-206ENST00000558338 ADGRB1O14514 1584 aa9.62□□□□□ -0.87
VPS13C-206ENST00000558338 FBXO3Q9UK99 471 aa9.62□□□□□ -0.87
VPS13C-206ENST00000558338 ATXN8OSP0DMR3 200 aa9.61□□□□□ -0.87
VPS13C-206ENST00000558338 NGEFQ8N5V2 710 aa9.61□□□□□ -0.87
VPS13C-206ENST00000558338 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.61□□□□□ -0.87
VPS13C-206ENST00000558338 SIGLEC1Q9BZZ2 1709 aa9.6□□□□□ -0.87
VPS13C-206ENST00000558338 C14orf93Q9H972 538 aaKnown RBP9.6□□□□□ -0.87
VPS13C-206ENST00000558338 NEXMIFQ5QGS0 1516 aa9.6□□□□□ -0.87
VPS13C-206ENST00000558338 GGT6Q6P531 493 aa9.59□□□□□ -0.87
VPS13C-206ENST00000558338 BBXQ8WY36 941 aaPredicted RBP9.59□□□□□ -0.87
VPS13C-206ENST00000558338 CFAP44Q96MT7 982 aa9.59□□□□□ -0.87
VPS13C-206ENST00000558338 PUS7Q96PZ0 661 aaKnown RBP9.59□□□□□ -0.87
VPS13C-206ENST00000558338 ZNF692Q9BU19 519 aaPredicted RBP9.59□□□□□ -0.87
VPS13C-206ENST00000558338 PCDH10Q9P2E7 1040 aa9.59□□□□□ -0.87
VPS13C-206ENST00000558338 ZFYVE9O95405 1425 aa9.59□□□□□ -0.87
VPS13C-206ENST00000558338 CHGAP10645 457 aaKnown RBP9.59□□□□□ -0.87
VPS13C-206ENST00000558338 ARHGEF28Q8N1W1 1705 aaKnown RBP9.58□□□□□ -0.88
VPS13C-206ENST00000558338 ADAMTS8Q9UP79 889 aa9.58□□□□□ -0.88
VPS13C-206ENST00000558338 REREQ9P2R6 1566 aa9.58□□□□□ -0.88
VPS13C-206ENST00000558338 PREX1Q8TCU6 1659 aa9.58□□□□□ -0.88
VPS13C-206ENST00000558338 VGFO15240 615 aaPredicted RBP9.57□□□□□ -0.88
VPS13C-206ENST00000558338 CFAP65Q6ZU64 1925 aaKnown RBP9.57□□□□□ -0.88
VPS13C-206ENST00000558338 SALL2Q9Y467 1007 aaPredicted RBP9.57□□□□□ -0.88
VPS13C-206ENST00000558338 POLR3AO14802 1390 aaPredicted RBP9.57□□□□□ -0.88
VPS13C-206ENST00000558338 SLC52A1Q9NWF4 448 aa9.56□□□□□ -0.88
VPS13C-206ENST00000558338 NSD2O96028 1365 aa9.56□□□□□ -0.88
VPS13C-206ENST00000558338 NINLQ9Y2I6 1382 aa9.56□□□□□ -0.88
VPS13C-206ENST00000558338 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.55□□□□□ -0.88
VPS13C-206ENST00000558338 ZNF521Q96K83 1311 aa9.55□□□□□ -0.88
VPS13C-206ENST00000558338 NSD3Q9BZ95 1437 aa9.55□□□□□ -0.88
VPS13C-206ENST00000558338 PRR29P0C7W0 189 aa9.55□□□□□ -0.88
VPS13C-206ENST00000558338 CD44P16070 742 aaKnown RBP9.55□□□□□ -0.88
VPS13C-206ENST00000558338 GOLGA2Q08379 1002 aa9.55□□□□□ -0.88
VPS13C-206ENST00000558338 MKRN4PQ13434 485 aaPredicted RBP9.55□□□□□ -0.88
VPS13C-206ENST00000558338 CDCA7LQ96GN5 454 aa9.55□□□□□ -0.88
VPS13C-206ENST00000558338 SENP3-EIF4A1A0A087X0R7 540 aa9.54□□□□□ -0.88
VPS13C-206ENST00000558338 RAPGEF3O95398 923 aa9.54□□□□□ -0.88
VPS13C-206ENST00000558338 EXOC6Q8TAG9 804 aa9.54□□□□□ -0.88
VPS13C-206ENST00000558338 EVC2Q86UK5 1308 aa9.54□□□□□ -0.88
VPS13C-206ENST00000558338 PLEKHH1Q9ULM0 1364 aa9.54□□□□□ -0.88
VPS13C-206ENST00000558338 DIP2BQ9P265 1576 aa9.54□□□□□ -0.88
VPS13C-206ENST00000558338 TMEM131LA2VDJ0 1609 aa9.54□□□□□ -0.88
VPS13C-206ENST00000558338 AGLP35573 1532 aa9.53□□□□□ -0.88
VPS13C-206ENST00000558338 POTEMA6NI47 508 aa9.53□□□□□ -0.88
VPS13C-206ENST00000558338 TRAK1Q9UPV9 953 aa9.53□□□□□ -0.88
VPS13C-206ENST00000558338 TULP4Q9NRJ4 1543 aa9.53□□□□□ -0.88
VPS13C-206ENST00000558338 YEATS2Q9ULM3 1422 aa9.53□□□□□ -0.88
VPS13C-206ENST00000558338 ANKRD36BQ8N2N9 1353 aa9.53□□□□□ -0.88
VPS13C-206ENST00000558338 CGNL1Q0VF96 1302 aa9.53□□□□□ -0.88
VPS13C-206ENST00000558338 TCERG1O14776 1098 aaKnown RBP9.53□□□□□ -0.88
VPS13C-206ENST00000558338 CARD14Q9BXL6 1004 aa9.53□□□□□ -0.88
VPS13C-206ENST00000558338 CLTCQ00610 1675 aaKnown RBP9.52□□□□□ -0.88
VPS13C-206ENST00000558338 SHPRHQ149N8 1683 aa9.52□□□□□ -0.88
VPS13C-206ENST00000558338 NKTRP30414 1462 aaKnown RBP9.52□□□□□ -0.89
VPS13C-206ENST00000558338 DUSP27Q5VZP5 1158 aa9.52□□□□□ -0.89
VPS13C-206ENST00000558338 E9PSI1 815 aa9.51□□□□□ -0.89
VPS13C-206ENST00000558338 MS4A1P11836 297 aa9.51□□□□□ -0.89
VPS13C-206ENST00000558338 CLCN6P51797 869 aa9.51□□□□□ -0.89
VPS13C-206ENST00000558338 RIMBP3CA6NJZ7 1639 aa9.51□□□□□ -0.89
VPS13C-206ENST00000558338 RIMBP3BA6NNM3 1639 aa9.51□□□□□ -0.89
VPS13C-206ENST00000558338 RIMBP3Q9UFD9 1639 aa9.51□□□□□ -0.89
VPS13C-206ENST00000558338 MYO5BQ9ULV0 1848 aa9.51□□□□□ -0.89
VPS13C-206ENST00000558338 ANP32AP39687 249 aaKnown RBP9.51□□□□□ -0.89
VPS13C-206ENST00000558338 SLFN5Q08AF3 891 aa9.51□□□□□ -0.89
VPS13C-206ENST00000558338 MORC1Q86VD1 984 aa9.51□□□□□ -0.89
VPS13C-206ENST00000558338 CFAP53Q96M91 514 aa9.5□□□□□ -0.89
VPS13C-206ENST00000558338 ANKRD26Q9UPS8 1709 aa9.5□□□□□ -0.89
VPS13C-206ENST00000558338 ATAD2Q6PL18 1390 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms