RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 SCAF1Q9H7N4 1312 aaKnown RBP25■■□□□ 1.59
SHMT2-225ENST00000556798 DCCP43146 1447 aa24.99■■□□□ 1.59
SHMT2-225ENST00000556798 CDC42BPGQ6DT37 1551 aa24.99■■□□□ 1.59
SHMT2-225ENST00000556798 SIRT1Q96EB6 747 aa24.99■■□□□ 1.59
SHMT2-225ENST00000556798 POGKQ9P215 609 aa24.98■■□□□ 1.59
SHMT2-225ENST00000556798 TIMELESSQ9UNS1 1208 aa24.98■■□□□ 1.59
SHMT2-225ENST00000556798 ROBO1Q9Y6N7 1651 aa24.97■■□□□ 1.59
SHMT2-225ENST00000556798 ATF3P18847 181 aa24.97■■□□□ 1.59
SHMT2-225ENST00000556798 ILDR1Q86SU0 546 aaPredicted RBP24.97■■□□□ 1.59
SHMT2-225ENST00000556798 QRICH2Q9H0J4 1663 aa24.97■■□□□ 1.59
SHMT2-225ENST00000556798 FMN2Q9NZ56 1722 aa24.95■■□□□ 1.59
SHMT2-225ENST00000556798 GPRASP1Q5JY77 1395 aa24.95■■□□□ 1.59
SHMT2-225ENST00000556798 CADPS2Q86UW7 1296 aa24.95■■□□□ 1.58
SHMT2-225ENST00000556798 ADGRB2O60241 1585 aa24.94■■□□□ 1.58
SHMT2-225ENST00000556798 MST1RQ04912 1400 aa24.94■■□□□ 1.58
SHMT2-225ENST00000556798 RGPD8O14715 1765 aaPredicted RBP24.92■■□□□ 1.58
SHMT2-225ENST00000556798 SLAIN2Q9P270 581 aa24.91■■□□□ 1.58
SHMT2-225ENST00000556798 MINK1Q8N4C8 1332 aaPredicted RBP24.9■■□□□ 1.58
SHMT2-225ENST00000556798 CARD11Q9BXL7 1154 aa24.9■■□□□ 1.58
SHMT2-225ENST00000556798 HIRIP3Q9BW71 556 aaPredicted RBP24.89■■□□□ 1.58
SHMT2-225ENST00000556798 CENPJQ9HC77 1338 aaPredicted RBP24.86■■□□□ 1.57
SHMT2-225ENST00000556798 C1orf167Q5SNV9 1468 aa24.86■■□□□ 1.57
SHMT2-225ENST00000556798 EIF3AQ14152 1382 aaKnown RBP24.85■■□□□ 1.57
SHMT2-225ENST00000556798 NUTM2FA1L443 756 aa24.85■■□□□ 1.57
SHMT2-225ENST00000556798 USP32Q8NFA0 1604 aa24.85■■□□□ 1.57
SHMT2-225ENST00000556798 PHLPP1O60346 1717 aa24.83■■□□□ 1.57
SHMT2-225ENST00000556798 NHSL1Q5SYE7 1610 aa24.81■■□□□ 1.56
SHMT2-225ENST00000556798 BRINP3Q76B58 766 aa24.8■■□□□ 1.56
SHMT2-225ENST00000556798 TULP4Q9NRJ4 1543 aa24.79■■□□□ 1.56
SHMT2-225ENST00000556798 WASLO00401 505 aaPredicted RBP24.78■■□□□ 1.56
SHMT2-225ENST00000556798 HSPA1LP34931 641 aa24.78■■□□□ 1.56
SHMT2-225ENST00000556798 ORAI2Q96SN7 254 aa24.78■■□□□ 1.56
SHMT2-225ENST00000556798 ITSN1Q15811 1721 aa24.78■■□□□ 1.56
SHMT2-225ENST00000556798 AHDC1Q5TGY3 1603 aaPredicted RBP24.77■■□□□ 1.56
SHMT2-225ENST00000556798 KIF1AQ12756 1690 aa24.77■■□□□ 1.56
SHMT2-225ENST00000556798 USP47Q96K76 1375 aa24.76■■□□□ 1.55
SHMT2-225ENST00000556798 COL16A1Q07092 1604 aaPredicted RBP24.75■■□□□ 1.55
SHMT2-225ENST00000556798 TOPAZ1Q8N9V7 1692 aa24.75■■□□□ 1.55
SHMT2-225ENST00000556798 ESCO1Q5FWF5 840 aa24.74■■□□□ 1.55
SHMT2-225ENST00000556798 ANKARQ7Z5J8 1434 aa24.74■■□□□ 1.55
SHMT2-225ENST00000556798 ATP7BP35670 1465 aa24.73■■□□□ 1.55
SHMT2-225ENST00000556798 PRR36Q9H6K5 1346 aa24.73■■□□□ 1.55
SHMT2-225ENST00000556798 CDK19Q9BWU1 502 aa24.73■■□□□ 1.55
SHMT2-225ENST00000556798 DDX17Q92841 729 aaKnown RBP24.72■■□□□ 1.55
SHMT2-225ENST00000556798 ST20-MTHFSA0A0A6YYL1 179 aa24.7■■□□□ 1.54
SHMT2-225ENST00000556798 SBNO2Q9Y2G9 1366 aa24.69■■□□□ 1.54
SHMT2-225ENST00000556798 SRPK2P78362 688 aaKnown RBP24.68■■□□□ 1.54
SHMT2-225ENST00000556798 CABP2Q9NPB3 220 aa24.68■■□□□ 1.54
SHMT2-225ENST00000556798 EVC2Q86UK5 1308 aa24.66■■□□□ 1.54
SHMT2-225ENST00000556798 NUDT16Q96DE0 195 aaKnown RBP24.66■■□□□ 1.54
SHMT2-225ENST00000556798 PHF8Q9UPP1 1060 aa24.66■■□□□ 1.54
SHMT2-225ENST00000556798 FOXO3O43524 673 aa24.64■■□□□ 1.54
SHMT2-225ENST00000556798 PMFBP1Q8TBY8 1022 aa24.64■■□□□ 1.54
SHMT2-225ENST00000556798 TESK2Q96S53 571 aa24.63■■□□□ 1.53
SHMT2-225ENST00000556798 PXDNQ92626 1479 aa24.63■■□□□ 1.53
SHMT2-225ENST00000556798 XPCQ01831 940 aaPredicted RBP24.62■■□□□ 1.53
SHMT2-225ENST00000556798 NPHP3Q7Z494 1330 aa24.61■■□□□ 1.53
SHMT2-225ENST00000556798 SHPRHQ149N8 1683 aa24.61■■□□□ 1.53
SHMT2-225ENST00000556798 PPIP5K1Q6PFW1 1433 aa24.61■■□□□ 1.53
SHMT2-225ENST00000556798 SOS2Q07890 1332 aaPredicted RBP24.59■■□□□ 1.53
SHMT2-225ENST00000556798 TRPM3Q9HCF6 1732 aaPredicted RBP24.58■■□□□ 1.53
SHMT2-225ENST00000556798 DISP3Q9P2K9 1392 aa24.58■■□□□ 1.53
SHMT2-225ENST00000556798 CCDC61Q9Y6R9 512 aa24.58■■□□□ 1.53
SHMT2-225ENST00000556798 EIF4G2P78344 907 aaKnown RBP eCLIP24.57■■□□□ 1.52
SHMT2-225ENST00000556798 HSPA5P11021 654 aaKnown RBP24.56■■□□□ 1.52
SHMT2-225ENST00000556798 AKAP12Q02952 1782 aa24.56■■□□□ 1.52
SHMT2-225ENST00000556798 NGDNQ8NEJ9 315 aaKnown RBP24.55■■□□□ 1.52
SHMT2-225ENST00000556798 JCADQ9P266 1359 aa24.54■■□□□ 1.52
SHMT2-225ENST00000556798 ATAD2Q6PL18 1390 aa24.54■■□□□ 1.52
SHMT2-225ENST00000556798 KRT28Q7Z3Y7 464 aa24.53■■□□□ 1.52
SHMT2-225ENST00000556798 TMF1P82094 1093 aa24.52■■□□□ 1.52
SHMT2-225ENST00000556798 PSME1Q06323 249 aa24.52■■□□□ 1.52
SHMT2-225ENST00000556798 LRRC59Q96AG4 307 aaKnown RBP24.52■■□□□ 1.52
SHMT2-225ENST00000556798 CABP1Q9NZU7 370 aa24.52■■□□□ 1.52
SHMT2-225ENST00000556798 ACEP12821 1306 aa24.52■■□□□ 1.52
SHMT2-225ENST00000556798 POLR3AO14802 1390 aaPredicted RBP24.52■■□□□ 1.52
SHMT2-225ENST00000556798 PLEKHG3A1L390 1219 aa24.51■■□□□ 1.51
SHMT2-225ENST00000556798 ALS2Q96Q42 1657 aa24.5■■□□□ 1.51
SHMT2-225ENST00000556798 PNPLA6Q8IY17 1366 aa24.5■■□□□ 1.51
SHMT2-225ENST00000556798 COL22A1Q8NFW1 1626 aaPredicted RBP24.5■■□□□ 1.51
SHMT2-225ENST00000556798 TNS3Q68CZ2 1445 aa24.49■■□□□ 1.51
SHMT2-225ENST00000556798 MON2Q7Z3U7 1717 aa24.49■■□□□ 1.51
SHMT2-225ENST00000556798 SLC24A1O60721 1099 aa24.48■■□□□ 1.51
SHMT2-225ENST00000556798 MYOM1P52179 1685 aa24.48■■□□□ 1.51
SHMT2-225ENST00000556798 MED1Q15648 1581 aaPredicted RBP24.48■■□□□ 1.51
SHMT2-225ENST00000556798 SBNO1A3KN83 1393 aa24.46■■□□□ 1.51
SHMT2-225ENST00000556798 SPATA31A3Q5VYP0 1347 aa24.46■■□□□ 1.51
SHMT2-225ENST00000556798 TMC1Q8TDI8 760 aa24.46■■□□□ 1.51
SHMT2-225ENST00000556798 ABCA3Q99758 1704 aa24.45■■□□□ 1.5
SHMT2-225ENST00000556798 NRKQ7Z2Y5 1582 aa24.45■■□□□ 1.5
SHMT2-225ENST00000556798 LRP6O75581 1613 aa24.44■■□□□ 1.5
SHMT2-225ENST00000556798 PUS7Q96PZ0 661 aaKnown RBP24.44■■□□□ 1.5
SHMT2-225ENST00000556798 CD163L1Q9NR16 1453 aa24.44■■□□□ 1.5
SHMT2-225ENST00000556798 LMOD2Q6P5Q4 547 aa24.43■■□□□ 1.5
SHMT2-225ENST00000556798 USP6P35125 1406 aa24.43■■□□□ 1.5
SHMT2-225ENST00000556798 PAK3O75914 559 aaPredicted RBP24.42■■□□□ 1.5
SHMT2-225ENST00000556798 SLC12A5Q9H2X9 1139 aa24.42■■□□□ 1.5
SHMT2-225ENST00000556798 SPATA31A6Q5VVP1 1343 aa24.41■■□□□ 1.5
SHMT2-225ENST00000556798 CPSF1Q10570 1443 aaKnown RBP24.41■■□□□ 1.5
SHMT2-225ENST00000556798 CRYBG1Q9Y4K1 1723 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms