RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 NGDNQ8NEJ9 315 aaKnown RBP18.71■□□□□ 0.59
CUX1-215ENST00000556210 LRPPRCP42704 1394 aaKnown RBP18.71■□□□□ 0.59
CUX1-215ENST00000556210 ABCC10Q5T3U5 1492 aa18.71■□□□□ 0.59
CUX1-215ENST00000556210 COG3Q96JB2 828 aa18.71■□□□□ 0.59
CUX1-215ENST00000556210 UHRF1BP1Q6BDS2 1440 aa18.71■□□□□ 0.59
CUX1-215ENST00000556210 DCTN1Q14203 1278 aa18.7■□□□□ 0.58
CUX1-215ENST00000556210 CD109Q6YHK3 1445 aa18.7■□□□□ 0.58
CUX1-215ENST00000556210 SCAF11Q99590 1463 aaKnown RBP18.7■□□□□ 0.58
CUX1-215ENST00000556210 RARSP54136 660 aaKnown RBP18.7■□□□□ 0.58
CUX1-215ENST00000556210 RTF1Q92541 710 aaKnown RBP18.69■□□□□ 0.58
CUX1-215ENST00000556210 ZNF428Q96B54 188 aa18.68■□□□□ 0.58
CUX1-215ENST00000556210 CFAP65Q6ZU64 1925 aaKnown RBP18.68■□□□□ 0.58
CUX1-215ENST00000556210 NOL8Q76FK4 1167 aaKnown RBP18.68■□□□□ 0.58
CUX1-215ENST00000556210 SLC26A8Q96RN1 970 aa18.67■□□□□ 0.58
CUX1-215ENST00000556210 RLBP1P12271 317 aa18.66■□□□□ 0.58
CUX1-215ENST00000556210 PDE3AQ14432 1141 aa18.66■□□□□ 0.58
CUX1-215ENST00000556210 NAP1L5Q96NT1 182 aaPredicted RBP18.66■□□□□ 0.58
CUX1-215ENST00000556210 TMPOP42166 694 aaKnown RBP18.65■□□□□ 0.58
CUX1-215ENST00000556210 AMPHP49418 695 aa18.65■□□□□ 0.58
CUX1-215ENST00000556210 SSH1Q8WYL5 1049 aa18.65■□□□□ 0.58
CUX1-215ENST00000556210 C14orf93Q9H972 538 aaKnown RBP18.65■□□□□ 0.58
CUX1-215ENST00000556210 PLA2R1Q13018 1463 aa18.65■□□□□ 0.58
CUX1-215ENST00000556210 RNF123Q5XPI4 1314 aa18.65■□□□□ 0.58
CUX1-215ENST00000556210 FOXD4L5Q5VV16 416 aaPredicted RBP18.65■□□□□ 0.58
CUX1-215ENST00000556210 FOXD4L4Q8WXT5 416 aaPredicted RBP18.65■□□□□ 0.58
CUX1-215ENST00000556210 EMILIN1Q9Y6C2 1016 aa18.65■□□□□ 0.58
CUX1-215ENST00000556210 DDX19BQ9UMR2 479 aa18.64■□□□□ 0.57
CUX1-215ENST00000556210 PCDHB15Q9Y5E8 787 aa18.64■□□□□ 0.57
CUX1-215ENST00000556210 BCORL1Q5H9F3 1711 aa18.64■□□□□ 0.57
CUX1-215ENST00000556210 SHANK2Q9UPX8 1470 aa18.63■□□□□ 0.57
CUX1-215ENST00000556210 NCKAP5LQ9HCH0 1330 aa18.63■□□□□ 0.57
CUX1-215ENST00000556210 HDGFP51858 240 aaKnown RBP18.63■□□□□ 0.57
CUX1-215ENST00000556210 ERCC6L2Q5T890 1561 aa18.62■□□□□ 0.57
CUX1-215ENST00000556210 NME9Q86XW9 330 aa18.62■□□□□ 0.57
CUX1-215ENST00000556210 ZRANB1Q9UGI0 708 aa18.62■□□□□ 0.57
CUX1-215ENST00000556210 MIS18AQ9NYP9 233 aa18.62■□□□□ 0.57
CUX1-215ENST00000556210 A0A0G2JS52 829 aa18.62■□□□□ 0.57
CUX1-215ENST00000556210 TMEM57Q8N5G2 664 aa18.62■□□□□ 0.57
CUX1-215ENST00000556210 RBM33Q96EV2 1170 aaKnown RBP18.62■□□□□ 0.57
CUX1-215ENST00000556210 COL17A1Q9UMD9 1497 aaPredicted RBP18.61■□□□□ 0.57
CUX1-215ENST00000556210 ASXL2Q76L83 1435 aa18.61■□□□□ 0.57
CUX1-215ENST00000556210 DUOX2Q9NRD8 1548 aa18.61■□□□□ 0.57
CUX1-215ENST00000556210 GLIPR1L2Q4G1C9 344 aa18.61■□□□□ 0.57
CUX1-215ENST00000556210 SEC24BO95487 1268 aa18.6■□□□□ 0.57
CUX1-215ENST00000556210 ARHGEF12Q9NZN5 1544 aa18.6■□□□□ 0.57
CUX1-215ENST00000556210 FOXD4L6Q3SYB3 417 aaPredicted RBP18.59■□□□□ 0.57
CUX1-215ENST00000556210 L1TD1Q5T7N2 865 aaKnown RBP18.59■□□□□ 0.57
CUX1-215ENST00000556210 FOXD4L3Q6VB84 417 aaPredicted RBP18.59■□□□□ 0.57
CUX1-215ENST00000556210 MAGI2Q86UL8 1455 aa18.59■□□□□ 0.57
CUX1-215ENST00000556210 SLC52A1Q9NWF4 448 aa18.59■□□□□ 0.57
CUX1-215ENST00000556210 MVPQ14764 893 aaKnown RBP18.59■□□□□ 0.57
CUX1-215ENST00000556210 SULT6B1Q6IMI4 303 aa18.59■□□□□ 0.57
CUX1-215ENST00000556210 C22orf23Q9BZE7 217 aa18.58■□□□□ 0.57
CUX1-215ENST00000556210 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.58■□□□□ 0.573e-7■■■□□ 18.3
CUX1-215ENST00000556210 ATF7IPQ6VMQ6 1270 aa18.58■□□□□ 0.57
CUX1-215ENST00000556210 FAM83GA6ND36 823 aa18.58■□□□□ 0.56
CUX1-215ENST00000556210 NKTRP30414 1462 aaKnown RBP18.58■□□□□ 0.56
CUX1-215ENST00000556210 KDM5CP41229 1560 aa18.58■□□□□ 0.56
CUX1-215ENST00000556210 WDR63Q8IWG1 891 aa18.58■□□□□ 0.56
CUX1-215ENST00000556210 TAOK2Q9UL54 1235 aa18.58■□□□□ 0.56
CUX1-215ENST00000556210 ANP32BQ92688 251 aaKnown RBP18.57■□□□□ 0.56
CUX1-215ENST00000556210 SAMD9LQ8IVG5 1584 aa18.57■□□□□ 0.56
CUX1-215ENST00000556210 OS9Q13438 667 aaPredicted RBP18.57■□□□□ 0.56
CUX1-215ENST00000556210 NGEFQ8N5V2 710 aa18.57■□□□□ 0.56
CUX1-215ENST00000556210 FYB1O15117 783 aa18.57■□□□□ 0.56
CUX1-215ENST00000556210 CEBPAP49715 358 aaPredicted RBP18.57■□□□□ 0.56
CUX1-215ENST00000556210 CALD1Q05682 793 aaKnown RBP18.57■□□□□ 0.56
CUX1-215ENST00000556210 ABCA8O94911 1581 aa18.57■□□□□ 0.56
CUX1-215ENST00000556210 TRIM27P14373 513 aa18.56■□□□□ 0.56
CUX1-215ENST00000556210 TRIM44Q96DX7 344 aaPredicted RBP18.56■□□□□ 0.56
CUX1-215ENST00000556210 UGGT1Q9NYU2 1555 aa18.55■□□□□ 0.56
CUX1-215ENST00000556210 EIF2S2P20042 333 aaKnown RBP18.55■□□□□ 0.56
CUX1-215ENST00000556210 TRIM6-TRIM34B2RNG4 842 aa18.54■□□□□ 0.56
CUX1-215ENST00000556210 TWISTNBQ3B726 338 aaPredicted RBP18.54■□□□□ 0.56
CUX1-215ENST00000556210 C8orf34Q49A92 452 aa18.54■□□□□ 0.56
CUX1-215ENST00000556210 GPRASP1Q5JY77 1395 aa18.54■□□□□ 0.56
CUX1-215ENST00000556210 CASC1Q6TDU7 716 aa18.53■□□□□ 0.56
CUX1-215ENST00000556210 EID1Q9Y6B2 187 aa18.53■□□□□ 0.56
CUX1-215ENST00000556210 TTC37Q6PGP7 1564 aa18.53■□□□□ 0.56
CUX1-215ENST00000556210 ASXL1Q8IXJ9 1541 aa18.53■□□□□ 0.56
CUX1-215ENST00000556210 ABCC2Q92887 1545 aa18.53■□□□□ 0.56
CUX1-215ENST00000556210 MCM10Q7L590 875 aa18.52■□□□□ 0.56
CUX1-215ENST00000556210 CHMP4BQ9H444 224 aaKnown RBP18.52■□□□□ 0.56
CUX1-215ENST00000556210 GOLGA6L22H0YM25 854 aa18.52■□□□□ 0.56
CUX1-215ENST00000556210 STK31Q9BXU1 1019 aa18.52■□□□□ 0.56
CUX1-215ENST00000556210 KIF16BQ96L93 1317 aa18.51■□□□□ 0.55
CUX1-215ENST00000556210 GNAI1P63096 354 aa18.5■□□□□ 0.55
CUX1-215ENST00000556210 NUDT16Q96DE0 195 aaKnown RBP18.5■□□□□ 0.55
CUX1-215ENST00000556210 GOLGA6L3A6NEY3 463 aa18.5■□□□□ 0.55
CUX1-215ENST00000556210 WDR7Q9Y4E6 1490 aa18.5■□□□□ 0.55
CUX1-215ENST00000556210 RPGRIP1LQ68CZ1 1315 aa18.5■□□□□ 0.55
CUX1-215ENST00000556210 RILPL2Q969X0 211 aa18.5■□□□□ 0.55
CUX1-215ENST00000556210 RSPH6AQ9H0K4 717 aa18.5■□□□□ 0.55
CUX1-215ENST00000556210 NLRP6P59044 892 aa18.49■□□□□ 0.55
CUX1-215ENST00000556210 LMOD3Q0VAK6 560 aa18.48■□□□□ 0.55
CUX1-215ENST00000556210 PHACTR3Q96KR7 559 aa18.48■□□□□ 0.55
CUX1-215ENST00000556210 TSPYL4Q9UJ04 414 aa18.48■□□□□ 0.55
CUX1-215ENST00000556210 RTEL1-TNFRSF6BF6WH68 1400 aa18.48■□□□□ 0.55
CUX1-215ENST00000556210 KRT24Q2M2I5 525 aa18.47■□□□□ 0.55
CUX1-215ENST00000556210 FKBP5Q13451 457 aaPredicted RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms