RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 MSS51Q4VC12 460 aa13.14□□□□□ -0.31
VRK1-205ENST00000555402 WFS1O76024 890 aa13.13□□□□□ -0.31
VRK1-205ENST00000555402 RNF19BQ6ZMZ0 732 aa13.13□□□□□ -0.31
VRK1-205ENST00000555402 GRIPAP1Q4V328 841 aa13.11□□□□□ -0.31
VRK1-205ENST00000555402 WNT7AO00755 349 aa13.09□□□□□ -0.31
VRK1-205ENST00000555402 SNIP1Q8TAD8 396 aaKnown RBP13.09□□□□□ -0.31
VRK1-205ENST00000555402 SMPD1P17405 629 aa13.08□□□□□ -0.32
VRK1-205ENST00000555402 NFX1Q12986 1120 aaKnown RBP13.07□□□□□ -0.32
VRK1-205ENST00000555402 TRIM32Q13049 653 aa13.06□□□□□ -0.32
VRK1-205ENST00000555402 MMP16P51512 607 aa13.05□□□□□ -0.32
VRK1-205ENST00000555402 Q3C1V9 767 aa13.05□□□□□ -0.32
VRK1-205ENST00000555402 MRGPRX2Q96LB1 330 aa13.04□□□□□ -0.32
VRK1-205ENST00000555402 ATP13A2Q9NQ11 1180 aa13.03□□□□□ -0.32
VRK1-205ENST00000555402 J3QL48 77 aa13.02□□□□□ -0.33
VRK1-205ENST00000555402 WIPF1O43516 503 aa13□□□□□ -0.33
VRK1-205ENST00000555402 SNRPBP14678 240 aaKnown RBP13□□□□□ -0.33
VRK1-205ENST00000555402 CD46P15529 392 aa12.99□□□□□ -0.33
VRK1-205ENST00000555402 GPIHBP1Q8IV16 184 aa12.99□□□□□ -0.33
VRK1-205ENST00000555402 USB1Q9BQ65 265 aaKnown RBP12.99□□□□□ -0.33
VRK1-205ENST00000555402 DXOO77932 396 aaKnown RBP12.98□□□□□ -0.33
VRK1-205ENST00000555402 HPS1Q92902 700 aa12.97□□□□□ -0.33
VRK1-205ENST00000555402 SENP2Q9HC62 589 aa12.97□□□□□ -0.33
VRK1-205ENST00000555402 STK17AQ9UEE5 414 aa12.97□□□□□ -0.33
VRK1-205ENST00000555402 KDM4AO75164 1064 aa12.96□□□□□ -0.33
VRK1-205ENST00000555402 TRIM47Q96LD4 638 aa12.96□□□□□ -0.33
VRK1-205ENST00000555402 REPIN1Q9BWE0 567 aaKnown RBP12.96□□□□□ -0.33
VRK1-205ENST00000555402 INSM1Q01101 510 aaPredicted RBP12.95□□□□□ -0.34
VRK1-205ENST00000555402 TERTO14746 1132 aaKnown RBP12.94□□□□□ -0.34
VRK1-205ENST00000555402 LCE2CQ5TA81 110 aa12.94□□□□□ -0.34
VRK1-205ENST00000555402 CCDC24Q8N4L8 307 aa12.94□□□□□ -0.34
VRK1-205ENST00000555402 RC3H1Q5TC82 1133 aaKnown RBP12.93□□□□□ -0.34
VRK1-205ENST00000555402 SKOR1P84550 965 aa12.91□□□□□ -0.34
VRK1-205ENST00000555402 HLA-CQ95604 372 aa12.91□□□□□ -0.34
VRK1-205ENST00000555402 KIFC2Q96AC6 838 aa12.9□□□□□ -0.34
VRK1-205ENST00000555402 WNT7BP56706 349 aa12.89□□□□□ -0.35
VRK1-205ENST00000555402 USP46P62068 366 aa12.89□□□□□ -0.35
VRK1-205ENST00000555402 MAP2K5Q13163 448 aa12.88□□□□□ -0.35
VRK1-205ENST00000555402 IRF6O14896 467 aa12.85□□□□□ -0.35
VRK1-205ENST00000555402 HOXA2O43364 376 aa12.85□□□□□ -0.35
VRK1-205ENST00000555402 MDM2Q00987 491 aaPredicted RBP12.85□□□□□ -0.35
VRK1-205ENST00000555402 ALDH1A1P00352 501 aa12.84□□□□□ -0.35
VRK1-205ENST00000555402 PLCB2Q00722 1185 aa12.83□□□□□ -0.36
VRK1-205ENST00000555402 JUNDP17535 347 aa12.82□□□□□ -0.36
VRK1-205ENST00000555402 GUCA2AQ02747 115 aa12.82□□□□□ -0.36
VRK1-205ENST00000555402 SYMPKQ92797 1274 aaKnown RBP12.8□□□□□ -0.36
VRK1-205ENST00000555402 SIAH2O43255 324 aa12.79□□□□□ -0.36
VRK1-205ENST00000555402 PTCRAQ6ISU1 281 aaPredicted RBP12.79□□□□□ -0.36
VRK1-205ENST00000555402 MINK1Q8N4C8 1332 aaPredicted RBP12.78□□□□□ -0.36
VRK1-205ENST00000555402 SLC16A10Q8TF71 515 aa12.77□□□□□ -0.37
VRK1-205ENST00000555402 NUDT12Q9BQG2 462 aa12.77□□□□□ -0.37
VRK1-205ENST00000555402 NXF1Q9UBU9 619 aaKnown RBP12.77□□□□□ -0.37
VRK1-205ENST00000555402 EHBP1Q8NDI1 1231 aa12.76□□□□□ -0.37
VRK1-205ENST00000555402 RETREG3Q86VR2 466 aa12.74□□□□□ -0.37
VRK1-205ENST00000555402 FAM217BQ9NTX9 383 aaPredicted RBP12.74□□□□□ -0.37
VRK1-205ENST00000555402 CAPN5O15484 640 aaPredicted RBP12.73□□□□□ -0.37
VRK1-205ENST00000555402 BMP1P13497 986 aa12.73□□□□□ -0.37
VRK1-205ENST00000555402 TRIM46Q7Z4K8 759 aa12.73□□□□□ -0.37
VRK1-205ENST00000555402 GPCPD1Q9NPB8 672 aa12.73□□□□□ -0.37
VRK1-205ENST00000555402 WASF2Q9Y6W5 498 aa12.73□□□□□ -0.37
VRK1-205ENST00000555402 NUTM1Q86Y26 1132 aa12.72□□□□□ -0.37
VRK1-205ENST00000555402 CCDC102AQ96A19 550 aa12.72□□□□□ -0.37
VRK1-205ENST00000555402 CLCN1P35523 988 aa12.71□□□□□ -0.37
VRK1-205ENST00000555402 GMPRP36959 345 aa12.69□□□□□ -0.38
VRK1-205ENST00000555402 SH3BP2P78314 561 aa12.69□□□□□ -0.38
VRK1-205ENST00000555402 NPAS3Q8IXF0 933 aa12.69□□□□□ -0.38
VRK1-205ENST00000555402 FAM181BA6NEQ2 426 aa12.68□□□□□ -0.38
VRK1-205ENST00000555402 PCDHGC3Q9UN70 934 aa12.68□□□□□ -0.38
VRK1-205ENST00000555402 TULP1O00294 542 aaPredicted RBP12.67□□□□□ -0.38
VRK1-205ENST00000555402 CCNYL3P0C7X3 344 aa12.67□□□□□ -0.38
VRK1-205ENST00000555402 FDX1P10109 184 aa12.67□□□□□ -0.38
VRK1-205ENST00000555402 IRF7Q92985 503 aa12.67□□□□□ -0.38
VRK1-205ENST00000555402 C6orf229H3BNL8 230 aa12.66□□□□□ -0.38
VRK1-205ENST00000555402 MS4A1P11836 297 aa12.66□□□□□ -0.38
VRK1-205ENST00000555402 KDM2AQ9Y2K7 1162 aa12.66□□□□□ -0.38
VRK1-205ENST00000555402 LORP23490 312 aaPredicted RBP12.65□□□□□ -0.38
VRK1-205ENST00000555402 VEGFBP49765 207 aa12.65□□□□□ -0.38
VRK1-205ENST00000555402 KRI1Q8N9T8 703 aaKnown RBP12.65□□□□□ -0.38
VRK1-205ENST00000555402 ZSCAN1Q8NBB4 408 aa12.64□□□□□ -0.39
VRK1-205ENST00000555402 EVA1BQ9NVM1 165 aa12.64□□□□□ -0.39
VRK1-205ENST00000555402 H3BM21 787 aa12.63□□□□□ -0.39
VRK1-205ENST00000555402 ZFP42Q96MM3 310 aa12.63□□□□□ -0.39
VRK1-205ENST00000555402 UNC93B1Q9H1C4 597 aa12.63□□□□□ -0.39
VRK1-205ENST00000555402 HAP1P54257 671 aaPredicted RBP12.62□□□□□ -0.39
VRK1-205ENST00000555402 PTPRNQ16849 979 aa12.62□□□□□ -0.39
VRK1-205ENST00000555402 BAP1Q92560 729 aa12.62□□□□□ -0.39
VRK1-205ENST00000555402 LINC01559Q495D7 138 aa12.6□□□□□ -0.39
VRK1-205ENST00000555402 KCNH2Q12809 1159 aa12.59□□□□□ -0.39
VRK1-205ENST00000555402 SPIRE2Q8WWL2 714 aa12.59□□□□□ -0.39
VRK1-205ENST00000555402 TLL2Q9Y6L7 1015 aa12.59□□□□□ -0.39
VRK1-205ENST00000555402 ERBB4Q15303 1308 aa12.59□□□□□ -0.39
VRK1-205ENST00000555402 VARSP26640 1264 aaKnown RBP12.58□□□□□ -0.4
VRK1-205ENST00000555402 PLEKHG3A1L390 1219 aa12.57□□□□□ -0.4
VRK1-205ENST00000555402 NDUFV2P19404 249 aa12.57□□□□□ -0.4
VRK1-205ENST00000555402 SSTR3P32745 418 aaPredicted RBP12.57□□□□□ -0.4
VRK1-205ENST00000555402 MPNDQ8N594 471 aa12.57□□□□□ -0.4
VRK1-205ENST00000555402 NNTQ13423 1086 aa12.56□□□□□ -0.4
VRK1-205ENST00000555402 ZNF511Q8NB15 262 aa12.56□□□□□ -0.4
VRK1-205ENST00000555402 PRR7Q8TB68 274 aa12.56□□□□□ -0.4
VRK1-205ENST00000555402 MOXD2PA6NHM9 499 aa12.54□□□□□ -0.4
VRK1-205ENST00000555402 MRPL14Q6P1L8 145 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms