RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 RGPD8O14715 1765 aaPredicted RBP15.09■□□□□ 0.01
TDP1-211ENST00000555178 PTCH1Q13635 1447 aa15.08■□□□□ 0
TDP1-211ENST00000555178 EIF3AQ14152 1382 aaKnown RBP15.07■□□□□ 0
TDP1-211ENST00000555178 FAM135BQ49AJ0 1406 aa15.07■□□□□ 0
TDP1-211ENST00000555178 KIF7Q2M1P5 1343 aa15.07■□□□□ 0
TDP1-211ENST00000555178 POLR3GLQ9BT43 218 aa15.07■□□□□ 0
TDP1-211ENST00000555178 PROSER2Q86WR7 435 aaPredicted RBP15.05■□□□□ -0
TDP1-211ENST00000555178 SIRT1Q96EB6 747 aa15.05■□□□□ -0
TDP1-211ENST00000555178 MYOM1P52179 1685 aa15.04■□□□□ -0
TDP1-211ENST00000555178 CCDC7Q96M83 1385 aa15.04■□□□□ -0
TDP1-211ENST00000555178 NUTM2FA1L443 756 aa15.04■□□□□ -0
TDP1-211ENST00000555178 CABP2Q9NPB3 220 aa15.04■□□□□ -0
TDP1-211ENST00000555178 LRRC7Q96NW7 1537 aa15.03■□□□□ -0
TDP1-211ENST00000555178 SBNO2Q9Y2G9 1366 aa15.03■□□□□ -0
TDP1-211ENST00000555178 DDX10Q13206 875 aaKnown RBP15.03■□□□□ -0
TDP1-211ENST00000555178 LTBP4Q8N2S1 1624 aa15.03■□□□□ -0
TDP1-211ENST00000555178 TMEM94Q12767 1356 aa15.03■□□□□ -0
TDP1-211ENST00000555178 USP32Q8NFA0 1604 aa15.03■□□□□ -0
TDP1-211ENST00000555178 DMRT2Q9Y5R5 561 aa15.02■□□□□ -0
TDP1-211ENST00000555178 DIEXFQ68CQ4 756 aaKnown RBP15.02□□□□□ -0.01
TDP1-211ENST00000555178 CDK19Q9BWU1 502 aa15.02□□□□□ -0.01
TDP1-211ENST00000555178 NKTRP30414 1462 aaKnown RBP15.02□□□□□ -0.01
TDP1-211ENST00000555178 ADGRB2O60241 1585 aa15.01□□□□□ -0.01
TDP1-211ENST00000555178 TMF1P82094 1093 aa15.01□□□□□ -0.01
TDP1-211ENST00000555178 PRR36Q9H6K5 1346 aa15□□□□□ -0.01
TDP1-211ENST00000555178 FMN2Q9NZ56 1722 aa15□□□□□ -0.01
TDP1-211ENST00000555178 WASLO00401 505 aaPredicted RBP15□□□□□ -0.01
TDP1-211ENST00000555178 ADGRL3Q9HAR2 1447 aa14.98□□□□□ -0.01
TDP1-211ENST00000555178 SRPK2P78362 688 aaKnown RBP14.98□□□□□ -0.01
TDP1-211ENST00000555178 EVC2Q86UK5 1308 aa14.98□□□□□ -0.01
TDP1-211ENST00000555178 C14orf37Q86TY3 774 aa14.97□□□□□ -0.01
TDP1-211ENST00000555178 SLC12A5Q9H2X9 1139 aa14.96□□□□□ -0.01
TDP1-211ENST00000555178 ATP7BP35670 1465 aa14.96□□□□□ -0.01
TDP1-211ENST00000555178 CDC42BPGQ6DT37 1551 aa14.96□□□□□ -0.02
TDP1-211ENST00000555178 TOPAZ1Q8N9V7 1692 aa14.95□□□□□ -0.02
TDP1-211ENST00000555178 NUDT16Q96DE0 195 aaKnown RBP14.94□□□□□ -0.02
TDP1-211ENST00000555178 CD163L1Q9NR16 1453 aa14.92□□□□□ -0.02
TDP1-211ENST00000555178 TMC1Q8TDI8 760 aa14.92□□□□□ -0.02
TDP1-211ENST00000555178 CABP1Q9NZU7 370 aa14.92□□□□□ -0.02
TDP1-211ENST00000555178 C19orf44Q9H6X5 657 aa14.92□□□□□ -0.02
TDP1-211ENST00000555178 PMFBP1Q8TBY8 1022 aa14.9□□□□□ -0.02
TDP1-211ENST00000555178 ORAI2Q96SN7 254 aa14.9□□□□□ -0.02
TDP1-211ENST00000555178 PANK3Q9H999 370 aa14.9□□□□□ -0.02
TDP1-211ENST00000555178 PPIP5K1Q6PFW1 1433 aa14.9□□□□□ -0.02
TDP1-211ENST00000555178 CARD14Q9BXL6 1004 aa14.9□□□□□ -0.02
TDP1-211ENST00000555178 MST1RQ04912 1400 aa14.89□□□□□ -0.03
TDP1-211ENST00000555178 AKAP12Q02952 1782 aa14.89□□□□□ -0.03
TDP1-211ENST00000555178 ITSN1Q15811 1721 aa14.89□□□□□ -0.03
TDP1-211ENST00000555178 CNGB1Q14028 1251 aaPredicted RBP14.89□□□□□ -0.03
TDP1-211ENST00000555178 NCOA3Q9Y6Q9 1424 aa14.88□□□□□ -0.03
TDP1-211ENST00000555178 MSH6P52701 1360 aa14.88□□□□□ -0.03
TDP1-211ENST00000555178 DDX17Q92841 729 aaKnown RBP14.88□□□□□ -0.03
TDP1-211ENST00000555178 CDCA8Q53HL2 280 aa14.87□□□□□ -0.03
TDP1-211ENST00000555178 CCDC61Q9Y6R9 512 aa14.87□□□□□ -0.03
TDP1-211ENST00000555178 C1orf167Q5SNV9 1468 aa14.87□□□□□ -0.03
TDP1-211ENST00000555178 A0A1W2PP64 1363 aa14.87□□□□□ -0.03
TDP1-211ENST00000555178 PER1O15534 1290 aaPredicted RBP14.86□□□□□ -0.03
TDP1-211ENST00000555178 MIER1Q8N108 512 aa14.86□□□□□ -0.03
TDP1-211ENST00000555178 ATAD2Q6PL18 1390 aa14.86□□□□□ -0.03
TDP1-211ENST00000555178 ATF3P18847 181 aa14.86□□□□□ -0.03
TDP1-211ENST00000555178 PUS7Q96PZ0 661 aaKnown RBP14.86□□□□□ -0.03
TDP1-211ENST00000555178 ESCO1Q5FWF5 840 aa14.85□□□□□ -0.03
TDP1-211ENST00000555178 MON2Q7Z3U7 1717 aa14.85□□□□□ -0.03
TDP1-211ENST00000555178 SLC24A1O60721 1099 aa14.85□□□□□ -0.03
TDP1-211ENST00000555178 ACEP12821 1306 aa14.84□□□□□ -0.03
TDP1-211ENST00000555178 DCCP43146 1447 aa14.84□□□□□ -0.03
TDP1-211ENST00000555178 ANKARQ7Z5J8 1434 aa14.84□□□□□ -0.03
TDP1-211ENST00000555178 XPCQ01831 940 aaPredicted RBP14.84□□□□□ -0.03
TDP1-211ENST00000555178 CPSF1Q10570 1443 aaKnown RBP14.83□□□□□ -0.03
TDP1-211ENST00000555178 PLEKHG3A1L390 1219 aa14.82□□□□□ -0.04
TDP1-211ENST00000555178 CADPS2Q86UW7 1296 aa14.82□□□□□ -0.04
TDP1-211ENST00000555178 SLAIN2Q9P270 581 aa14.82□□□□□ -0.04
TDP1-211ENST00000555178 ANKRD36BQ8N2N9 1353 aa14.82□□□□□ -0.04
TDP1-211ENST00000555178 PHF8Q9UPP1 1060 aa14.82□□□□□ -0.04
TDP1-211ENST00000555178 NRKQ7Z2Y5 1582 aa14.82□□□□□ -0.04
TDP1-211ENST00000555178 FOXO3O43524 673 aa14.81□□□□□ -0.04
TDP1-211ENST00000555178 ZRANB1Q9UGI0 708 aa14.81□□□□□ -0.04
TDP1-211ENST00000555178 NSD3Q9BZ95 1437 aa14.81□□□□□ -0.04
TDP1-211ENST00000555178 BRINP3Q76B58 766 aa14.8□□□□□ -0.04
TDP1-211ENST00000555178 POLR3AO14802 1390 aaPredicted RBP14.8□□□□□ -0.04
TDP1-211ENST00000555178 CERKQ8TCT0 537 aa14.8□□□□□ -0.04
TDP1-211ENST00000555178 ROBO1Q9Y6N7 1651 aa14.8□□□□□ -0.04
TDP1-211ENST00000555178 KTN1Q86UP2 1357 aaKnown RBP14.79□□□□□ -0.04
TDP1-211ENST00000555178 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.79□□□□□ -0.04
TDP1-211ENST00000555178 NGDNQ8NEJ9 315 aaKnown RBP14.79□□□□□ -0.04
TDP1-211ENST00000555178 KIF20BQ96Q89 1820 aa14.78□□□□□ -0.04
TDP1-211ENST00000555178 AMER1Q5JTC6 1135 aaPredicted RBP14.78□□□□□ -0.04
TDP1-211ENST00000555178 CC2D1BQ5T0F9 858 aaKnown RBP14.78□□□□□ -0.04
TDP1-211ENST00000555178 TRPM3Q9HCF6 1732 aaPredicted RBP14.78□□□□□ -0.04
TDP1-211ENST00000555178 MARF1Q9Y4F3 1742 aaKnown RBP14.78□□□□□ -0.04
TDP1-211ENST00000555178 USP6P35125 1406 aa14.78□□□□□ -0.04
TDP1-211ENST00000555178 KIF1AQ12756 1690 aa14.77□□□□□ -0.04
TDP1-211ENST00000555178 NINLQ9Y2I6 1382 aa14.77□□□□□ -0.04
TDP1-211ENST00000555178 SSH2Q76I76 1423 aa14.77□□□□□ -0.04
TDP1-211ENST00000555178 NME9Q86XW9 330 aa14.77□□□□□ -0.05
TDP1-211ENST00000555178 TERF2IPQ9NYB0 399 aa14.77□□□□□ -0.05
TDP1-211ENST00000555178 PIK3C2AO00443 1686 aa14.77□□□□□ -0.05
TDP1-211ENST00000555178 HDGFL2Q7Z4V5 671 aaPredicted RBP14.76□□□□□ -0.05
TDP1-211ENST00000555178 ANP32CO43423 234 aa14.76□□□□□ -0.05
TDP1-211ENST00000555178 FBLN1P23142 703 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms