RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 WAPLQ7Z5K2 1190 aa18.04■□□□□ 0.48
SHMT2-214ENST00000554604 DCAF11Q8TEB1 546 aa18.04■□□□□ 0.48
SHMT2-214ENST00000554604 KDM2AQ9Y2K7 1162 aa18.04■□□□□ 0.48
SHMT2-214ENST00000554604 DHX57Q6P158 1386 aaKnown RBP18.04■□□□□ 0.48
SHMT2-214ENST00000554604 CDC42BPGQ6DT37 1551 aa18.03■□□□□ 0.48
SHMT2-214ENST00000554604 SPATA31A6Q5VVP1 1343 aa18.02■□□□□ 0.48
SHMT2-214ENST00000554604 DDX17Q92841 729 aaKnown RBP18.01■□□□□ 0.47
SHMT2-214ENST00000554604 MEX3CQ5U5Q3 659 aaKnown RBP18■□□□□ 0.47
SHMT2-214ENST00000554604 LRRC59Q96AG4 307 aaKnown RBP18■□□□□ 0.47
SHMT2-214ENST00000554604 STAC3Q96MF2 364 aa18■□□□□ 0.47
SHMT2-214ENST00000554604 ORAI2Q96SN7 254 aa18■□□□□ 0.47
SHMT2-214ENST00000554604 PLEKHH1Q9ULM0 1364 aa17.99■□□□□ 0.47
SHMT2-214ENST00000554604 SIRT1Q96EB6 747 aa17.98■□□□□ 0.47
SHMT2-214ENST00000554604 RGS17Q9UGC6 210 aaPredicted RBP17.98■□□□□ 0.47
SHMT2-214ENST00000554604 NUTM2FA1L443 756 aa17.97■□□□□ 0.47
SHMT2-214ENST00000554604 NUTM2BA6NNL0 878 aaPredicted RBP17.97■□□□□ 0.47
SHMT2-214ENST00000554604 NUTM2EB1AL46 878 aaPredicted RBP17.97■□□□□ 0.47
SHMT2-214ENST00000554604 ESCO1Q5FWF5 840 aa17.97■□□□□ 0.47
SHMT2-214ENST00000554604 NUTM2AQ8IVF1 878 aaPredicted RBP17.97■□□□□ 0.47
SHMT2-214ENST00000554604 FMN2Q9NZ56 1722 aa17.96■□□□□ 0.47
SHMT2-214ENST00000554604 SAFB2Q14151 953 aaKnown RBP eCLIP17.96■□□□□ 0.47
SHMT2-214ENST00000554604 POGKQ9P215 609 aa17.96■□□□□ 0.47
SHMT2-214ENST00000554604 LRP6O75581 1613 aa17.95■□□□□ 0.46
SHMT2-214ENST00000554604 PRAM1Q96QH2 718 aa17.95■□□□□ 0.46
SHMT2-214ENST00000554604 RGPD8O14715 1765 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-214ENST00000554604 DLC1Q96QB1 1528 aa17.93■□□□□ 0.46
SHMT2-214ENST00000554604 ADGRB1O14514 1584 aa17.93■□□□□ 0.46
SHMT2-214ENST00000554604 TRAK1Q9UPV9 953 aa17.93■□□□□ 0.46
SHMT2-214ENST00000554604 NPHP3Q7Z494 1330 aa17.93■□□□□ 0.46
SHMT2-214ENST00000554604 SOS2Q07890 1332 aaPredicted RBP17.92■□□□□ 0.46
SHMT2-214ENST00000554604 PNPLA6Q8IY17 1366 aa17.91■□□□□ 0.46
SHMT2-214ENST00000554604 POTEAQ6S8J7 498 aa17.91■□□□□ 0.46
SHMT2-214ENST00000554604 FOXO3O43524 673 aa17.9■□□□□ 0.46
SHMT2-214ENST00000554604 KIF1AQ12756 1690 aa17.9■□□□□ 0.46
SHMT2-214ENST00000554604 XPCQ01831 940 aaPredicted RBP17.88■□□□□ 0.45
SHMT2-214ENST00000554604 ZNF772Q68DY9 489 aaPredicted RBP17.88■□□□□ 0.45
SHMT2-214ENST00000554604 KIAA1210Q9ULL0 1709 aa17.88■□□□□ 0.45
SHMT2-214ENST00000554604 ARHGEF28Q8N1W1 1705 aaKnown RBP17.86■□□□□ 0.45
SHMT2-214ENST00000554604 HIRIP3Q9BW71 556 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-214ENST00000554604 MINK1Q8N4C8 1332 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-214ENST00000554604 PXDNQ92626 1479 aa17.86■□□□□ 0.45
SHMT2-214ENST00000554604 ADGRB2O60241 1585 aa17.86■□□□□ 0.45
SHMT2-214ENST00000554604 C8orf37Q96NL8 207 aa17.85■□□□□ 0.45
SHMT2-214ENST00000554604 ADAMTS2O95450 1211 aa17.84■□□□□ 0.45
SHMT2-214ENST00000554604 PHF8Q9UPP1 1060 aa17.84■□□□□ 0.45
SHMT2-214ENST00000554604 COL22A1Q8NFW1 1626 aaPredicted RBP17.83■□□□□ 0.45
SHMT2-214ENST00000554604 AFF2P51816 1311 aa17.83■□□□□ 0.44
SHMT2-214ENST00000554604 CLSPNQ9HAW4 1339 aa17.83■□□□□ 0.44
SHMT2-214ENST00000554604 NEUROD1Q13562 356 aa17.83■□□□□ 0.44
SHMT2-214ENST00000554604 SIN3AQ96ST3 1273 aa17.83■□□□□ 0.44
SHMT2-214ENST00000554604 EIF3AQ14152 1382 aaKnown RBP17.82■□□□□ 0.44
SHMT2-214ENST00000554604 NGLY1Q96IV0 654 aa17.82■□□□□ 0.44
SHMT2-214ENST00000554604 ANKARQ7Z5J8 1434 aa17.81■□□□□ 0.44
SHMT2-214ENST00000554604 USP32Q8NFA0 1604 aa17.81■□□□□ 0.44
SHMT2-214ENST00000554604 KRT28Q7Z3Y7 464 aa17.81■□□□□ 0.44
SHMT2-214ENST00000554604 PSME1Q06323 249 aa17.8■□□□□ 0.44
SHMT2-214ENST00000554604 L3MBTL2Q969R5 705 aa17.8■□□□□ 0.44
SHMT2-214ENST00000554604 MARF1Q9Y4F3 1742 aaKnown RBP17.79■□□□□ 0.44
SHMT2-214ENST00000554604 WASLO00401 505 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-214ENST00000554604 NBPF1Q3BBV0 1214 aa17.79■□□□□ 0.44
SHMT2-214ENST00000554604 PMFBP1Q8TBY8 1022 aa17.79■□□□□ 0.44
SHMT2-214ENST00000554604 TULP4Q9NRJ4 1543 aa17.78■□□□□ 0.44
SHMT2-214ENST00000554604 ITSN1Q15811 1721 aa17.78■□□□□ 0.44
SHMT2-214ENST00000554604 SPATA31A3Q5VYP0 1347 aa17.77■□□□□ 0.44
SHMT2-214ENST00000554604 RXRBP28702 533 aa17.77■□□□□ 0.44
SHMT2-214ENST00000554604 LMOD2Q6P5Q4 547 aa17.76■□□□□ 0.43
SHMT2-214ENST00000554604 QTRT2Q9H974 415 aaKnown RBP17.75■□□□□ 0.43
SHMT2-214ENST00000554604 PRR36Q9H6K5 1346 aa17.74■□□□□ 0.43
SHMT2-214ENST00000554604 TNS3Q68CZ2 1445 aa17.74■□□□□ 0.43
SHMT2-214ENST00000554604 HAP1P54257 671 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-214ENST00000554604 GPRASP1Q5JY77 1395 aa17.74■□□□□ 0.43
SHMT2-214ENST00000554604 TRPM1Q7Z4N2 1603 aa17.73■□□□□ 0.43
SHMT2-214ENST00000554604 NGDNQ8NEJ9 315 aaKnown RBP17.73■□□□□ 0.43
SHMT2-214ENST00000554604 USP21Q9UK80 565 aa17.73■□□□□ 0.43
SHMT2-214ENST00000554604 SBNO1A3KN83 1393 aa17.73■□□□□ 0.43
SHMT2-214ENST00000554604 ARHGEF10O15013 1369 aa17.72■□□□□ 0.43
SHMT2-214ENST00000554604 PLEKHG5O94827 1062 aa17.72■□□□□ 0.43
SHMT2-214ENST00000554604 CDK19Q9BWU1 502 aa17.72■□□□□ 0.43
SHMT2-214ENST00000554604 QRICH2Q9H0J4 1663 aa17.71■□□□□ 0.43
SHMT2-214ENST00000554604 RBM6P78332 1123 aaKnown RBP17.71■□□□□ 0.43
SHMT2-214ENST00000554604 NUDT16Q96DE0 195 aaKnown RBP17.71■□□□□ 0.43
SHMT2-214ENST00000554604 CENPJQ9HC77 1338 aaPredicted RBP17.71■□□□□ 0.42
SHMT2-214ENST00000554604 ATP7BP35670 1465 aa17.7■□□□□ 0.42
SHMT2-214ENST00000554604 FNBP4Q8N3X1 1017 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-214ENST00000554604 TRPM3Q9HCF6 1732 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-214ENST00000554604 CDK12Q9NYV4 1490 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-214ENST00000554604 TRPC5Q9UL62 973 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-214ENST00000554604 ROCK2O75116 1388 aaKnown RBP17.68■□□□□ 0.42
SHMT2-214ENST00000554604 PAK3O75914 559 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-214ENST00000554604 CABLES1Q8TDN4 633 aa17.68■□□□□ 0.42
SHMT2-214ENST00000554604 ABCA3Q99758 1704 aa17.68■□□□□ 0.42
SHMT2-214ENST00000554604 TONSLQ96HA7 1378 aa17.67■□□□□ 0.42
SHMT2-214ENST00000554604 SRPK2P78362 688 aaKnown RBP17.67■□□□□ 0.42
SHMT2-214ENST00000554604 TOPAZ1Q8N9V7 1692 aa17.67■□□□□ 0.42
SHMT2-214ENST00000554604 ALS2Q96Q42 1657 aa17.67■□□□□ 0.42
SHMT2-214ENST00000554604 CCDC61Q9Y6R9 512 aa17.66■□□□□ 0.42
SHMT2-214ENST00000554604 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.64■□□□□ 0.41
SHMT2-214ENST00000554604 ATRNO75882 1429 aa17.64■□□□□ 0.41
SHMT2-214ENST00000554604 BCL9LQ86UU0 1499 aa17.63■□□□□ 0.41
SHMT2-214ENST00000554604 RGS12O14924 1447 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms