RNA–Protein interactions for RNA: ENST00000554514.1

ARHGEF40-203, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 2,928 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-203ENST00000554514 SBNO2Q9Y2G9 1366 aa20.37■□□□□ 0.85
ARHGEF40-203ENST00000554514 QRICH2Q9H0J4 1663 aa20.37■□□□□ 0.85
ARHGEF40-203ENST00000554514 PANK1Q8TE04 598 aa20.36■□□□□ 0.85
ARHGEF40-203ENST00000554514 POLR3AO14802 1390 aaPredicted RBP20.36■□□□□ 0.85
ARHGEF40-203ENST00000554514 SLC4A3P48751 1232 aa20.36■□□□□ 0.85
ARHGEF40-203ENST00000554514 TCP11L2Q8N4U5 519 aa20.36■□□□□ 0.85
ARHGEF40-203ENST00000554514 HECW2Q9P2P5 1572 aa20.35■□□□□ 0.85
ARHGEF40-203ENST00000554514 BCL2L13Q9BXK5 485 aa20.35■□□□□ 0.85
ARHGEF40-203ENST00000554514 COG6Q9Y2V7 657 aa20.35■□□□□ 0.85
ARHGEF40-203ENST00000554514 PPLO60437 1756 aa20.35■□□□□ 0.85
ARHGEF40-203ENST00000554514 MYO3AQ8NEV4 1616 aa20.34■□□□□ 0.85
ARHGEF40-203ENST00000554514 ABCC3O15438 1527 aa20.34■□□□□ 0.85
ARHGEF40-203ENST00000554514 MLH3Q9UHC1 1453 aa20.34■□□□□ 0.85
ARHGEF40-203ENST00000554514 CGNL1Q0VF96 1302 aa20.34■□□□□ 0.85
ARHGEF40-203ENST00000554514 RUNDC1Q96C34 613 aa20.33■□□□□ 0.85
ARHGEF40-203ENST00000554514 ADGRB1O14514 1584 aa20.33■□□□□ 0.84
ARHGEF40-203ENST00000554514 SETBP1Q9Y6X0 1596 aa20.33■□□□□ 0.84
ARHGEF40-203ENST00000554514 EVC2Q86UK5 1308 aa20.33■□□□□ 0.84
ARHGEF40-203ENST00000554514 VGFO15240 615 aaPredicted RBP20.33■□□□□ 0.84
ARHGEF40-203ENST00000554514 IDI1Q13907 227 aa20.32■□□□□ 0.84
ARHGEF40-203ENST00000554514 RPGRIP1LQ68CZ1 1315 aa20.32■□□□□ 0.84
ARHGEF40-203ENST00000554514 SRPK2P78362 688 aaKnown RBP20.31■□□□□ 0.84
ARHGEF40-203ENST00000554514 IGHDP01880 384 aa20.31■□□□□ 0.84
ARHGEF40-203ENST00000554514 U2AF1L5P0DN76 240 aaPredicted RBP20.31■□□□□ 0.84
ARHGEF40-203ENST00000554514 U2AF1Q01081 240 aaKnown RBP eCLIP20.31■□□□□ 0.84
ARHGEF40-203ENST00000554514 CFAP53Q96M91 514 aa20.31■□□□□ 0.84
ARHGEF40-203ENST00000554514 NEFMP07197 916 aa20.3■□□□□ 0.84
ARHGEF40-203ENST00000554514 FAM161AQ3B820 660 aa20.3■□□□□ 0.84
ARHGEF40-203ENST00000554514 TNNQ9UQP3 1299 aa20.29■□□□□ 0.84
ARHGEF40-203ENST00000554514 CFAP74Q9C0B2 1584 aa20.29■□□□□ 0.84
ARHGEF40-203ENST00000554514 SIGLEC1Q9BZZ2 1709 aa20.28■□□□□ 0.84
ARHGEF40-203ENST00000554514 C8orf34Q49A92 452 aa20.28■□□□□ 0.84
ARHGEF40-203ENST00000554514 MINK1Q8N4C8 1332 aaPredicted RBP20.28■□□□□ 0.84
ARHGEF40-203ENST00000554514 GLI2P10070 1586 aa20.28■□□□□ 0.84
ARHGEF40-203ENST00000554514 CAMSAP1Q5T5Y3 1602 aa20.27■□□□□ 0.84
ARHGEF40-203ENST00000554514 ZC3H13Q5T200 1668 aaKnown RBP20.27■□□□□ 0.84
ARHGEF40-203ENST00000554514 CLUAP1Q96AJ1 413 aa20.27■□□□□ 0.84
ARHGEF40-203ENST00000554514 GGNBP2Q9H3C7 697 aa20.27■□□□□ 0.84
ARHGEF40-203ENST00000554514 U2SURPO15042 1029 aaKnown RBP20.26■□□□□ 0.83
ARHGEF40-203ENST00000554514 DDRGK1Q96HY6 314 aa20.26■□□□□ 0.83
ARHGEF40-203ENST00000554514 DAXXQ9UER7 740 aaPredicted RBP20.26■□□□□ 0.83
ARHGEF40-203ENST00000554514 NGEFQ8N5V2 710 aa20.26■□□□□ 0.83
ARHGEF40-203ENST00000554514 SHPRHQ149N8 1683 aa20.26■□□□□ 0.83
ARHGEF40-203ENST00000554514 TULP4Q9NRJ4 1543 aa20.24■□□□□ 0.83
ARHGEF40-203ENST00000554514 RARSP54136 660 aaKnown RBP20.24■□□□□ 0.83
ARHGEF40-203ENST00000554514 YEATS2Q9ULM3 1422 aa20.23■□□□□ 0.83
ARHGEF40-203ENST00000554514 PDE3AQ14432 1141 aa20.23■□□□□ 0.83
ARHGEF40-203ENST00000554514 POGKQ9P215 609 aa20.23■□□□□ 0.83
ARHGEF40-203ENST00000554514 ANKRD36BQ8N2N9 1353 aa20.23■□□□□ 0.83
ARHGEF40-203ENST00000554514 FBXO31Q5XUX0 539 aaPredicted RBP20.23■□□□□ 0.83
ARHGEF40-203ENST00000554514 NEXMIFQ5QGS0 1516 aa20.22■□□□□ 0.83
ARHGEF40-203ENST00000554514 PRAM1Q96QH2 718 aa20.22■□□□□ 0.83
ARHGEF40-203ENST00000554514 RLBP1P12271 317 aa20.21■□□□□ 0.83
ARHGEF40-203ENST00000554514 STAG3Q9UJ98 1225 aa20.2■□□□□ 0.82
ARHGEF40-203ENST00000554514 DIP2CQ9Y2E4 1556 aa20.2■□□□□ 0.82
ARHGEF40-203ENST00000554514 TSR2Q969E8 191 aaKnown RBP20.2■□□□□ 0.82
ARHGEF40-203ENST00000554514 A0A1W2PP64 1363 aa20.2■□□□□ 0.82
ARHGEF40-203ENST00000554514 ARHGEF28Q8N1W1 1705 aaKnown RBP20.19■□□□□ 0.82
ARHGEF40-203ENST00000554514 WDR63Q8IWG1 891 aa20.18■□□□□ 0.82
ARHGEF40-203ENST00000554514 CYB5RLQ6IPT4 315 aa20.18■□□□□ 0.82
ARHGEF40-203ENST00000554514 IQSEC2Q5JU85 1478 aa20.18■□□□□ 0.82
ARHGEF40-203ENST00000554514 NEO1Q92859 1461 aa20.17■□□□□ 0.82
ARHGEF40-203ENST00000554514 PPM1GO15355 546 aaPredicted RBP20.17■□□□□ 0.82
ARHGEF40-203ENST00000554514 SLC52A1Q9NWF4 448 aa20.16■□□□□ 0.82
ARHGEF40-203ENST00000554514 MYH16Q9H6N6 1097 aa20.16■□□□□ 0.82
ARHGEF40-203ENST00000554514 PHF23Q9BUL5 403 aaPredicted RBP20.15■□□□□ 0.82
ARHGEF40-203ENST00000554514 PCDHB15Q9Y5E8 787 aa20.15■□□□□ 0.82
ARHGEF40-203ENST00000554514 PIK3C2BO00750 1634 aa20.15■□□□□ 0.82
ARHGEF40-203ENST00000554514 MYO5BQ9ULV0 1848 aa20.14■□□□□ 0.81
ARHGEF40-203ENST00000554514 FBLN1P23142 703 aa20.13■□□□□ 0.81
ARHGEF40-203ENST00000554514 MAPK8IP3Q9UPT6 1336 aa20.13■□□□□ 0.81
ARHGEF40-203ENST00000554514 MLECQ14165 292 aa20.13■□□□□ 0.81
ARHGEF40-203ENST00000554514 NINLQ9Y2I6 1382 aa20.12■□□□□ 0.81
ARHGEF40-203ENST00000554514 FYB1O15117 783 aa20.12■□□□□ 0.81
ARHGEF40-203ENST00000554514 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.12■□□□□ 0.81
ARHGEF40-203ENST00000554514 TERF2IPQ9NYB0 399 aa20.12■□□□□ 0.81
ARHGEF40-203ENST00000554514 NSD2O96028 1365 aa20.12■□□□□ 0.81
ARHGEF40-203ENST00000554514 SEC24BO95487 1268 aa20.12■□□□□ 0.81
ARHGEF40-203ENST00000554514 FTSJ3Q8IY81 847 aaKnown RBP20.12■□□□□ 0.81
ARHGEF40-203ENST00000554514 USP32Q8NFA0 1604 aa20.11■□□□□ 0.81
ARHGEF40-203ENST00000554514 EXOSC9Q06265 439 aaKnown RBP20.11■□□□□ 0.81
ARHGEF40-203ENST00000554514 CCDC27Q2M243 656 aa20.11■□□□□ 0.81
ARHGEF40-203ENST00000554514 PUS7Q96PZ0 661 aaKnown RBP20.11■□□□□ 0.81
ARHGEF40-203ENST00000554514 CABP1Q9NZU7 370 aa20.11■□□□□ 0.81
ARHGEF40-203ENST00000554514 CDK19Q9BWU1 502 aa20.1■□□□□ 0.81
ARHGEF40-203ENST00000554514 ABCC11Q96J66 1382 aa20.1■□□□□ 0.81
ARHGEF40-203ENST00000554514 SMC4Q9NTJ3 1288 aa20.1■□□□□ 0.81
ARHGEF40-203ENST00000554514 TMPOP42166 694 aaKnown RBP20.09■□□□□ 0.81
ARHGEF40-203ENST00000554514 ARHGAP31Q2M1Z3 1444 aa20.09■□□□□ 0.81
ARHGEF40-203ENST00000554514 WAPLQ7Z5K2 1190 aa20.09■□□□□ 0.81
ARHGEF40-203ENST00000554514 PMFBP1Q8TBY8 1022 aa20.09■□□□□ 0.81
ARHGEF40-203ENST00000554514 YTHDC2Q9H6S0 1430 aaKnown RBP20.09■□□□□ 0.81
ARHGEF40-203ENST00000554514 RICTORQ6R327 1708 aa20.08■□□□□ 0.81
ARHGEF40-203ENST00000554514 HDGFL2Q7Z4V5 671 aaPredicted RBP20.08■□□□□ 0.81
ARHGEF40-203ENST00000554514 FAM69CQ0P6D2 419 aa20.08■□□□□ 0.8
ARHGEF40-203ENST00000554514 NFKBIBQ15653 356 aa20.08■□□□□ 0.8
ARHGEF40-203ENST00000554514 PDZRN3Q9UPQ7 1066 aa20.07■□□□□ 0.8
ARHGEF40-203ENST00000554514 RIPK4P57078 832 aa20.07■□□□□ 0.8
ARHGEF40-203ENST00000554514 ZKSCAN2Q63HK3 967 aa20.07■□□□□ 0.8
ARHGEF40-203ENST00000554514 PLEKHF1Q96S99 279 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms