RNA–Protein interactions for RNA: ENST00000547517.5

RAB5C-204, Transcript of RAB5C, member RAS oncogene family, humanhuman

TSL 1 (best) BASIC

Gene RAB5C, Length 1,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5C-204ENST00000547517 BRINP3Q76B58 766 aa17.11■□□□□ 0.33
RAB5C-204ENST00000547517 COL16A1Q07092 1604 aaPredicted RBP17.1■□□□□ 0.33
RAB5C-204ENST00000547517 C1orf167Q5SNV9 1468 aa17.1■□□□□ 0.33
RAB5C-204ENST00000547517 MED1Q15648 1581 aaPredicted RBP17.1■□□□□ 0.33
RAB5C-204ENST00000547517 PRAM1Q96QH2 718 aa17.09■□□□□ 0.33
RAB5C-204ENST00000547517 KIAA1210Q9ULL0 1709 aa17.09■□□□□ 0.33
RAB5C-204ENST00000547517 SAFB2Q14151 953 aaKnown RBP eCLIP17.08■□□□□ 0.32
RAB5C-204ENST00000547517 L3MBTL2Q969R5 705 aa17.08■□□□□ 0.32
RAB5C-204ENST00000547517 TRAK1Q9UPV9 953 aa17.08■□□□□ 0.32
RAB5C-204ENST00000547517 NHSL1Q5SYE7 1610 aa17.07■□□□□ 0.32
RAB5C-204ENST00000547517 PCGF6Q9BYE7 350 aa17.07■□□□□ 0.32
RAB5C-204ENST00000547517 SIRT1Q96EB6 747 aa17.06■□□□□ 0.32
RAB5C-204ENST00000547517 POGKQ9P215 609 aa17.06■□□□□ 0.32
RAB5C-204ENST00000547517 ARHGEF28Q8N1W1 1705 aaKnown RBP17.06■□□□□ 0.32
RAB5C-204ENST00000547517 FMN2Q9NZ56 1722 aa17.06■□□□□ 0.32
RAB5C-204ENST00000547517 ADGRB2O60241 1585 aa17.04■□□□□ 0.32
RAB5C-204ENST00000547517 NUTM2FA1L443 756 aa17.03■□□□□ 0.32
RAB5C-204ENST00000547517 JCADQ9P266 1359 aa17.02■□□□□ 0.32
RAB5C-204ENST00000547517 DDX17Q92841 729 aaKnown RBP17.02■□□□□ 0.32
RAB5C-204ENST00000547517 ORAI2Q96SN7 254 aa17.02■□□□□ 0.32
RAB5C-204ENST00000547517 TRPM1Q7Z4N2 1603 aa17.02■□□□□ 0.31
RAB5C-204ENST00000547517 TONSLQ96HA7 1378 aa17.02■□□□□ 0.31
RAB5C-204ENST00000547517 NBPF1Q3BBV0 1214 aa17.01■□□□□ 0.31
RAB5C-204ENST00000547517 ESCO1Q5FWF5 840 aa17■□□□□ 0.31
RAB5C-204ENST00000547517 SHPRHQ149N8 1683 aa17■□□□□ 0.31
RAB5C-204ENST00000547517 MINK1Q8N4C8 1332 aaPredicted RBP16.99■□□□□ 0.31
RAB5C-204ENST00000547517 HIRIP3Q9BW71 556 aaPredicted RBP16.99■□□□□ 0.31
RAB5C-204ENST00000547517 KIF1AQ12756 1690 aa16.97■□□□□ 0.31
RAB5C-204ENST00000547517 PHF23Q9BUL5 403 aaPredicted RBP16.97■□□□□ 0.31
RAB5C-204ENST00000547517 USP32Q8NFA0 1604 aa16.96■□□□□ 0.31
RAB5C-204ENST00000547517 ROCK2O75116 1388 aaKnown RBP16.96■□□□□ 0.31
RAB5C-204ENST00000547517 ANKARQ7Z5J8 1434 aa16.96■□□□□ 0.3
RAB5C-204ENST00000547517 RGPD8O14715 1765 aaPredicted RBP16.95■□□□□ 0.3
RAB5C-204ENST00000547517 TULP4Q9NRJ4 1543 aa16.95■□□□□ 0.3
RAB5C-204ENST00000547517 NPHP3Q7Z494 1330 aa16.95■□□□□ 0.3
RAB5C-204ENST00000547517 EIF3AQ14152 1382 aaKnown RBP16.94■□□□□ 0.3
RAB5C-204ENST00000547517 NBPF8Q3BBV2 869 aa16.94■□□□□ 0.3
RAB5C-204ENST00000547517 LRP6O75581 1613 aa16.94■□□□□ 0.3
RAB5C-204ENST00000547517 QRICH2Q9H0J4 1663 aa16.94■□□□□ 0.3
RAB5C-204ENST00000547517 SOS2Q07890 1332 aaPredicted RBP16.94■□□□□ 0.3
RAB5C-204ENST00000547517 SPATA31A6Q5VVP1 1343 aa16.94■□□□□ 0.3
RAB5C-204ENST00000547517 PXDNQ92626 1479 aa16.93■□□□□ 0.3
RAB5C-204ENST00000547517 XPCQ01831 940 aaPredicted RBP16.93■□□□□ 0.3
RAB5C-204ENST00000547517 LRRC59Q96AG4 307 aaKnown RBP16.93■□□□□ 0.3
RAB5C-204ENST00000547517 PNPLA6Q8IY17 1366 aa16.92■□□□□ 0.3
RAB5C-204ENST00000547517 WASLO00401 505 aaPredicted RBP16.92■□□□□ 0.3
RAB5C-204ENST00000547517 FOXO3O43524 673 aa16.92■□□□□ 0.3
RAB5C-204ENST00000547517 RALGAPBQ86X10 1494 aa16.92■□□□□ 0.3
RAB5C-204ENST00000547517 PRR36Q9H6K5 1346 aa16.91■□□□□ 0.3
RAB5C-204ENST00000547517 CENPJQ9HC77 1338 aaPredicted RBP16.91■□□□□ 0.3
RAB5C-204ENST00000547517 PHF8Q9UPP1 1060 aa16.9■□□□□ 0.3
RAB5C-204ENST00000547517 ATP7BP35670 1465 aa16.89■□□□□ 0.29
RAB5C-204ENST00000547517 NUTM2BA6NNL0 878 aaPredicted RBP16.89■□□□□ 0.29
RAB5C-204ENST00000547517 NUTM2EB1AL46 878 aaPredicted RBP16.89■□□□□ 0.29
RAB5C-204ENST00000547517 NUTM2AQ8IVF1 878 aaPredicted RBP16.89■□□□□ 0.29
RAB5C-204ENST00000547517 GPRASP1Q5JY77 1395 aa16.89■□□□□ 0.29
RAB5C-204ENST00000547517 ITSN1Q15811 1721 aa16.88■□□□□ 0.29
RAB5C-204ENST00000547517 MEX3CQ5U5Q3 659 aaKnown RBP16.88■□□□□ 0.29
RAB5C-204ENST00000547517 PMFBP1Q8TBY8 1022 aa16.87■□□□□ 0.29
RAB5C-204ENST00000547517 COL22A1Q8NFW1 1626 aaPredicted RBP16.86■□□□□ 0.29
RAB5C-204ENST00000547517 TOPAZ1Q8N9V7 1692 aa16.86■□□□□ 0.29
RAB5C-204ENST00000547517 CDK19Q9BWU1 502 aa16.86■□□□□ 0.29
RAB5C-204ENST00000547517 CLSPNQ9HAW4 1339 aa16.86■□□□□ 0.29
RAB5C-204ENST00000547517 CCER1Q8TC90 406 aaPredicted RBP16.85■□□□□ 0.29
RAB5C-204ENST00000547517 CARD11Q9BXL7 1154 aa16.85■□□□□ 0.29
RAB5C-204ENST00000547517 KRT28Q7Z3Y7 464 aa16.84■□□□□ 0.29
RAB5C-204ENST00000547517 TNS3Q68CZ2 1445 aa16.84■□□□□ 0.29
RAB5C-204ENST00000547517 NUDT16Q96DE0 195 aaKnown RBP16.83■□□□□ 0.28
RAB5C-204ENST00000547517 RGS17Q9UGC6 210 aaPredicted RBP16.83■□□□□ 0.28
RAB5C-204ENST00000547517 SPATA31A3Q5VYP0 1347 aa16.82■□□□□ 0.28
RAB5C-204ENST00000547517 SRPK2P78362 688 aaKnown RBP16.82■□□□□ 0.28
RAB5C-204ENST00000547517 PSME1Q06323 249 aa16.82■□□□□ 0.28
RAB5C-204ENST00000547517 TRPM3Q9HCF6 1732 aaPredicted RBP16.82■□□□□ 0.28
RAB5C-204ENST00000547517 CABP2Q9NPB3 220 aa16.81■□□□□ 0.28
RAB5C-204ENST00000547517 SBNO1A3KN83 1393 aa16.8■□□□□ 0.28
RAB5C-204ENST00000547517 ADAMTS2O95450 1211 aa16.8■□□□□ 0.28
RAB5C-204ENST00000547517 NGDNQ8NEJ9 315 aaKnown RBP16.8■□□□□ 0.28
RAB5C-204ENST00000547517 C8orf37Q96NL8 207 aa16.79■□□□□ 0.28
RAB5C-204ENST00000547517 PPIP5K1Q6PFW1 1433 aa16.79■□□□□ 0.28
RAB5C-204ENST00000547517 EVC2Q86UK5 1308 aa16.78■□□□□ 0.28
RAB5C-204ENST00000547517 LMOD2Q6P5Q4 547 aa16.78■□□□□ 0.28
RAB5C-204ENST00000547517 CCDC61Q9Y6R9 512 aa16.78■□□□□ 0.28
RAB5C-204ENST00000547517 PLEKHG5O94827 1062 aa16.77■□□□□ 0.28
RAB5C-204ENST00000547517 ARHGEF10O15013 1369 aa16.77■□□□□ 0.27
RAB5C-204ENST00000547517 ABCA3Q99758 1704 aa16.76■□□□□ 0.27
RAB5C-204ENST00000547517 AFF2P51816 1311 aa16.76■□□□□ 0.27
RAB5C-204ENST00000547517 ALS2Q96Q42 1657 aa16.76■□□□□ 0.27
RAB5C-204ENST00000547517 POTEAQ6S8J7 498 aa16.76■□□□□ 0.27
RAB5C-204ENST00000547517 POLR3AO14802 1390 aaPredicted RBP16.76■□□□□ 0.27
RAB5C-204ENST00000547517 SBNO2Q9Y2G9 1366 aa16.76■□□□□ 0.27
RAB5C-204ENST00000547517 ACEP12821 1306 aa16.75■□□□□ 0.27
RAB5C-204ENST00000547517 TIMELESSQ9UNS1 1208 aa16.75■□□□□ 0.27
RAB5C-204ENST00000547517 MARF1Q9Y4F3 1742 aaKnown RBP16.74■□□□□ 0.27
RAB5C-204ENST00000547517 PAK3O75914 559 aaPredicted RBP16.74■□□□□ 0.27
RAB5C-204ENST00000547517 HAP1P54257 671 aaPredicted RBP16.74■□□□□ 0.27
RAB5C-204ENST00000547517 ZNF772Q68DY9 489 aaPredicted RBP16.74■□□□□ 0.27
RAB5C-204ENST00000547517 PLEKHG3A1L390 1219 aa16.73■□□□□ 0.27
RAB5C-204ENST00000547517 CABLES1Q8TDN4 633 aa16.72■□□□□ 0.27
RAB5C-204ENST00000547517 NGLY1Q96IV0 654 aa16.72■□□□□ 0.27
RAB5C-204ENST00000547517 USP47Q96K76 1375 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms