RNA–Protein interactions for RNA: ENST00000543928.5

SP140-213, Transcript of SP140 nuclear body protein, humanhuman

TSL 2

Gene SP140, Length 640 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-213ENST00000543928 MSH6P52701 1360 aa19.34■□□□□ 0.69
SP140-213ENST00000543928 C19orf44Q9H6X5 657 aa19.33■□□□□ 0.68
SP140-213ENST00000543928 NALCNQ8IZF0 1738 aa19.33■□□□□ 0.68
SP140-213ENST00000543928 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.31■□□□□ 0.68
SP140-213ENST00000543928 EIF3AQ14152 1382 aaKnown RBP19.3■□□□□ 0.68
SP140-213ENST00000543928 CENPJQ9HC77 1338 aaPredicted RBP19.29■□□□□ 0.68
SP140-213ENST00000543928 MINK1Q8N4C8 1332 aaPredicted RBP19.28■□□□□ 0.68
SP140-213ENST00000543928 UBAP1LF5GYI3 381 aa19.28■□□□□ 0.68
SP140-213ENST00000543928 ATF3P18847 181 aa19.28■□□□□ 0.68
SP140-213ENST00000543928 DCCP43146 1447 aa19.27■□□□□ 0.68
SP140-213ENST00000543928 CADPS2Q86UW7 1296 aa19.27■□□□□ 0.68
SP140-213ENST00000543928 TOM1O60784 492 aa19.26■□□□□ 0.67
SP140-213ENST00000543928 HIRIP3Q9BW71 556 aaPredicted RBP19.26■□□□□ 0.67
SP140-213ENST00000543928 QRICH2Q9H0J4 1663 aa19.25■□□□□ 0.67
SP140-213ENST00000543928 CDC42BPGQ6DT37 1551 aa19.25■□□□□ 0.67
SP140-213ENST00000543928 USP47Q96K76 1375 aa19.25■□□□□ 0.67
SP140-213ENST00000543928 ADGRB2O60241 1585 aa19.23■□□□□ 0.67
SP140-213ENST00000543928 SLAIN2Q9P270 581 aa19.22■□□□□ 0.67
SP140-213ENST00000543928 ST20-MTHFSA0A0A6YYL1 179 aa19.21■□□□□ 0.67
SP140-213ENST00000543928 MST1RQ04912 1400 aa19.21■□□□□ 0.67
SP140-213ENST00000543928 WASLO00401 505 aaPredicted RBP19.2■□□□□ 0.66
SP140-213ENST00000543928 ZEB1P37275 1124 aaPredicted RBP19.2■□□□□ 0.66
SP140-213ENST00000543928 PIP4K2BP78356 416 aa19.2■□□□□ 0.66
SP140-213ENST00000543928 FMN2Q9NZ56 1722 aa19.2■□□□□ 0.66
SP140-213ENST00000543928 NUTM2FA1L443 756 aa19.19■□□□□ 0.66
SP140-213ENST00000543928 SCAF1Q9H7N4 1312 aaKnown RBP19.19■□□□□ 0.66
SP140-213ENST00000543928 SBNO2Q9Y2G9 1366 aa19.19■□□□□ 0.66
SP140-213ENST00000543928 EIF4G2P78344 907 aaKnown RBP eCLIP19.18■□□□□ 0.66
SP140-213ENST00000543928 CDK19Q9BWU1 502 aa19.18■□□□□ 0.66
SP140-213ENST00000543928 C1orf167Q5SNV9 1468 aa19.17■□□□□ 0.66
SP140-213ENST00000543928 FBXO41Q8TF61 875 aa19.17■□□□□ 0.66
SP140-213ENST00000543928 TULP4Q9NRJ4 1543 aa19.16■□□□□ 0.66
SP140-213ENST00000543928 TESK2Q96S53 571 aa19.16■□□□□ 0.66
SP140-213ENST00000543928 EVC2Q86UK5 1308 aa19.16■□□□□ 0.66
SP140-213ENST00000543928 HSPA5P11021 654 aaKnown RBP19.15■□□□□ 0.66
SP140-213ENST00000543928 SRPK2P78362 688 aaKnown RBP19.14■□□□□ 0.65
SP140-213ENST00000543928 CABP2Q9NPB3 220 aa19.13■□□□□ 0.65
SP140-213ENST00000543928 PRR36Q9H6K5 1346 aa19.13■□□□□ 0.65
SP140-213ENST00000543928 ANKARQ7Z5J8 1434 aa19.13■□□□□ 0.65
SP140-213ENST00000543928 USP32Q8NFA0 1604 aa19.13■□□□□ 0.65
SP140-213ENST00000543928 ROBO1Q9Y6N7 1651 aa19.13■□□□□ 0.65
SP140-213ENST00000543928 ESCO1Q5FWF5 840 aa19.12■□□□□ 0.65
SP140-213ENST00000543928 BRINP3Q76B58 766 aa19.12■□□□□ 0.65
SP140-213ENST00000543928 ORAI2Q96SN7 254 aa19.12■□□□□ 0.65
SP140-213ENST00000543928 RGPD8O14715 1765 aaPredicted RBP19.11■□□□□ 0.65
SP140-213ENST00000543928 ATP7BP35670 1465 aa19.11■□□□□ 0.65
SP140-213ENST00000543928 SLC24A1O60721 1099 aa19.11■□□□□ 0.65
SP140-213ENST00000543928 NUDT16Q96DE0 195 aaKnown RBP19.11■□□□□ 0.65
SP140-213ENST00000543928 MSH5O43196 834 aa19.09■□□□□ 0.65
SP140-213ENST00000543928 TMF1P82094 1093 aa19.09■□□□□ 0.65
SP140-213ENST00000543928 DISP3Q9P2K9 1392 aa19.08■□□□□ 0.65
SP140-213ENST00000543928 PIAS4Q8N2W9 510 aaPredicted RBP19.08■□□□□ 0.64
SP140-213ENST00000543928 PHF8Q9UPP1 1060 aa19.07■□□□□ 0.64
SP140-213ENST00000543928 CCDC61Q9Y6R9 512 aa19.07■□□□□ 0.64
SP140-213ENST00000543928 PMFBP1Q8TBY8 1022 aa19.06■□□□□ 0.64
SP140-213ENST00000543928 ITSN1Q15811 1721 aa19.05■□□□□ 0.64
SP140-213ENST00000543928 ATAD2Q6PL18 1390 aa19.05■□□□□ 0.64
SP140-213ENST00000543928 KIF1AQ12756 1690 aa19.05■□□□□ 0.64
SP140-213ENST00000543928 TOPAZ1Q8N9V7 1692 aa19.05■□□□□ 0.64
SP140-213ENST00000543928 PPIP5K1Q6PFW1 1433 aa19.04■□□□□ 0.64
SP140-213ENST00000543928 DDX17Q92841 729 aaKnown RBP19.04■□□□□ 0.64
SP140-213ENST00000543928 FOXO3O43524 673 aa19.03■□□□□ 0.64
SP140-213ENST00000543928 HSPA1LP34931 641 aa19.03■□□□□ 0.64
SP140-213ENST00000543928 PUS7Q96PZ0 661 aaKnown RBP19.03■□□□□ 0.64
SP140-213ENST00000543928 NHSL1Q5SYE7 1610 aa19.03■□□□□ 0.64
SP140-213ENST00000543928 CDCA8Q53HL2 280 aa19.02■□□□□ 0.64
SP140-213ENST00000543928 CABP1Q9NZU7 370 aa19.02■□□□□ 0.64
SP140-213ENST00000543928 AHDC1Q5TGY3 1603 aaPredicted RBP19.02■□□□□ 0.64
SP140-213ENST00000543928 NPHP3Q7Z494 1330 aa19.01■□□□□ 0.63
SP140-213ENST00000543928 PLEKHG3A1L390 1219 aa19.01■□□□□ 0.63
SP140-213ENST00000543928 ILDR1Q86SU0 546 aaPredicted RBP19.01■□□□□ 0.63
SP140-213ENST00000543928 NGDNQ8NEJ9 315 aaKnown RBP19.01■□□□□ 0.63
SP140-213ENST00000543928 PHLPP1O60346 1717 aa19■□□□□ 0.63
SP140-213ENST00000543928 XPCQ01831 940 aaPredicted RBP18.99■□□□□ 0.63
SP140-213ENST00000543928 TMC1Q8TDI8 760 aa18.99■□□□□ 0.63
SP140-213ENST00000543928 ACEP12821 1306 aa18.99■□□□□ 0.63
SP140-213ENST00000543928 PSME1Q06323 249 aa18.98■□□□□ 0.63
SP140-213ENST00000543928 SOS2Q07890 1332 aaPredicted RBP18.98■□□□□ 0.63
SP140-213ENST00000543928 POLR3AO14802 1390 aaPredicted RBP18.97■□□□□ 0.63
SP140-213ENST00000543928 COL16A1Q07092 1604 aaPredicted RBP18.97■□□□□ 0.63
SP140-213ENST00000543928 C11orf95C9JLR9 678 aaPredicted RBP18.97■□□□□ 0.63
SP140-213ENST00000543928 KRT28Q7Z3Y7 464 aa18.97■□□□□ 0.63
SP140-213ENST00000543928 POLR3GLQ9BT43 218 aa18.97■□□□□ 0.63
SP140-213ENST00000543928 SLC12A5Q9H2X9 1139 aa18.97■□□□□ 0.63
SP140-213ENST00000543928 PXDNQ92626 1479 aa18.97■□□□□ 0.63
SP140-213ENST00000543928 NINLQ9Y2I6 1382 aa18.94■□□□□ 0.62
SP140-213ENST00000543928 LRRC59Q96AG4 307 aaKnown RBP18.93■□□□□ 0.62
SP140-213ENST00000543928 KIF7Q2M1P5 1343 aa18.93■□□□□ 0.62
SP140-213ENST00000543928 CPSF1Q10570 1443 aaKnown RBP18.91■□□□□ 0.62
SP140-213ENST00000543928 CD163L1Q9NR16 1453 aa18.91■□□□□ 0.62
SP140-213ENST00000543928 ZNF692Q9BU19 519 aaPredicted RBP18.91■□□□□ 0.62
SP140-213ENST00000543928 TERF2IPQ9NYB0 399 aa18.91■□□□□ 0.62
SP140-213ENST00000543928 SBNO1A3KN83 1393 aa18.91■□□□□ 0.62
SP140-213ENST00000543928 AKAP12Q02952 1782 aa18.91■□□□□ 0.62
SP140-213ENST00000543928 USP6P35125 1406 aa18.91■□□□□ 0.62
SP140-213ENST00000543928 MYOM1P52179 1685 aa18.9■□□□□ 0.62
SP140-213ENST00000543928 HDGFL2Q7Z4V5 671 aaPredicted RBP18.9■□□□□ 0.62
SP140-213ENST00000543928 TRPM3Q9HCF6 1732 aaPredicted RBP18.9■□□□□ 0.62
SP140-213ENST00000543928 PAK3O75914 559 aaPredicted RBP18.89■□□□□ 0.61
SP140-213ENST00000543928 SPATA31A3Q5VYP0 1347 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms