RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 FECHP22830 423 aa10.18□□□□□ -0.78
PRKDC-210ENST00000541488 NXF1Q9UBU9 619 aaKnown RBP10.18□□□□□ -0.78
PRKDC-210ENST00000541488 GPIHBP1Q8IV16 184 aa10.17□□□□□ -0.78
PRKDC-210ENST00000541488 HPS1Q92902 700 aa10.16□□□□□ -0.78
PRKDC-210ENST00000541488 FAM160A2Q8N612 972 aaPredicted RBP10.15□□□□□ -0.78
PRKDC-210ENST00000541488 IRF7Q92985 503 aa10.15□□□□□ -0.78
PRKDC-210ENST00000541488 THAP11Q96EK4 314 aa10.15□□□□□ -0.78
PRKDC-210ENST00000541488 PRDM9Q9NQV7 894 aa10.15□□□□□ -0.78
PRKDC-210ENST00000541488 GPR37O15354 613 aa10.14□□□□□ -0.79
PRKDC-210ENST00000541488 ZBTB24O43167 697 aaPredicted RBP10.14□□□□□ -0.79
PRKDC-210ENST00000541488 HIC1Q14526 733 aa10.14□□□□□ -0.79
PRKDC-210ENST00000541488 MRGPRX2Q96LB1 330 aa10.14□□□□□ -0.79
PRKDC-210ENST00000541488 TULP1O00294 542 aaPredicted RBP10.13□□□□□ -0.79
PRKDC-210ENST00000541488 GNPATO15228 680 aa10.13□□□□□ -0.79
PRKDC-210ENST00000541488 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.12□□□□□ -0.79
PRKDC-210ENST00000541488 VEGFBP49765 207 aa10.12□□□□□ -0.79
PRKDC-210ENST00000541488 MORN1Q5T089 497 aa10.11□□□□□ -0.79
PRKDC-210ENST00000541488 NPAS3Q8IXF0 933 aa10.1□□□□□ -0.79
PRKDC-210ENST00000541488 NLRP7Q8WX94 980 aa10.1□□□□□ -0.79
PRKDC-210ENST00000541488 ERBB4Q15303 1308 aa10.09□□□□□ -0.79
PRKDC-210ENST00000541488 TRIM32Q13049 653 aa10.09□□□□□ -0.79
PRKDC-210ENST00000541488 H3BM21 787 aa10.08□□□□□ -0.8
PRKDC-210ENST00000541488 FMNL1O95466 1100 aaPredicted RBP10.08□□□□□ -0.8
PRKDC-210ENST00000541488 KCTD17Q8N5Z5 321 aa10.08□□□□□ -0.8
PRKDC-210ENST00000541488 RSPH4AQ5TD94 716 aa10.06□□□□□ -0.8
PRKDC-210ENST00000541488 PXYLP1Q8TE99 480 aa10.06□□□□□ -0.8
PRKDC-210ENST00000541488 FUT2Q10981 343 aa10.05□□□□□ -0.8
PRKDC-210ENST00000541488 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.05□□□□□ -0.8
PRKDC-210ENST00000541488 METTL3Q86U44 580 aaKnown RBP10.05□□□□□ -0.8
PRKDC-210ENST00000541488 SLC27A5Q9Y2P5 690 aa10.05□□□□□ -0.8
PRKDC-210ENST00000541488 OATP04181 439 aa10.04□□□□□ -0.8
PRKDC-210ENST00000541488 BMP1P13497 986 aa10.03□□□□□ -0.8
PRKDC-210ENST00000541488 REPIN1Q9BWE0 567 aaKnown RBP10.03□□□□□ -0.8
PRKDC-210ENST00000541488 MSS51Q4VC12 460 aa10.02□□□□□ -0.81
PRKDC-210ENST00000541488 BRICD5Q6PL45 260 aa10.02□□□□□ -0.81
PRKDC-210ENST00000541488 ATP6V1AP38606 617 aa10.01□□□□□ -0.81
PRKDC-210ENST00000541488 GSK3AP49840 483 aa10.01□□□□□ -0.81
PRKDC-210ENST00000541488 KCNMA1Q12791 1236 aa10.01□□□□□ -0.81
PRKDC-210ENST00000541488 TRIM46Q7Z4K8 759 aa10.01□□□□□ -0.81
PRKDC-210ENST00000541488 PHOX2BQ99453 314 aa10.01□□□□□ -0.81
PRKDC-210ENST00000541488 SLC24A1O60721 1099 aa10□□□□□ -0.81
PRKDC-210ENST00000541488 SALL2Q9Y467 1007 aaPredicted RBP10□□□□□ -0.81
PRKDC-210ENST00000541488 RDH13Q8NBN7 331 aa9.99□□□□□ -0.81
PRKDC-210ENST00000541488 RNF19BQ6ZMZ0 732 aa9.98□□□□□ -0.81
PRKDC-210ENST00000541488 MAP2K5Q13163 448 aa9.97□□□□□ -0.81
PRKDC-210ENST00000541488 RC3H1Q5TC82 1133 aaKnown RBP9.97□□□□□ -0.81
PRKDC-210ENST00000541488 DDX11L8A8MPP1 907 aa9.95□□□□□ -0.82
PRKDC-210ENST00000541488 ALDH1A1P00352 501 aa9.95□□□□□ -0.82
PRKDC-210ENST00000541488 SKOR1P84550 965 aa9.94□□□□□ -0.82
PRKDC-210ENST00000541488 CCDC102AQ96A19 550 aa9.94□□□□□ -0.82
PRKDC-210ENST00000541488 IRF6O14896 467 aa9.93□□□□□ -0.82
PRKDC-210ENST00000541488 MMP16P51512 607 aa9.93□□□□□ -0.82
PRKDC-210ENST00000541488 KRI1Q8N9T8 703 aaKnown RBP9.93□□□□□ -0.82
PRKDC-210ENST00000541488 CAPN5O15484 640 aaPredicted RBP9.92□□□□□ -0.82
PRKDC-210ENST00000541488 ZC3H15Q8WU90 426 aaKnown RBP9.92□□□□□ -0.82
PRKDC-210ENST00000541488 DAXXQ9UER7 740 aaPredicted RBP9.92□□□□□ -0.82
PRKDC-210ENST00000541488 MDM2Q00987 491 aaPredicted RBP9.91□□□□□ -0.82
PRKDC-210ENST00000541488 TMEM151AQ8N4L1 468 aa9.91□□□□□ -0.82
PRKDC-210ENST00000541488 MINK1Q8N4C8 1332 aaPredicted RBP9.9□□□□□ -0.82
PRKDC-210ENST00000541488 GCGRP47871 477 aa9.9□□□□□ -0.82
PRKDC-210ENST00000541488 WNT7BP56706 349 aa9.9□□□□□ -0.82
PRKDC-210ENST00000541488 VSIG8P0DPA2 414 aa9.89□□□□□ -0.83
PRKDC-210ENST00000541488 GDF11O95390 407 aa9.88□□□□□ -0.83
PRKDC-210ENST00000541488 ZFP42Q96MM3 310 aa9.88□□□□□ -0.83
PRKDC-210ENST00000541488 DXOO77932 396 aaKnown RBP9.87□□□□□ -0.83
PRKDC-210ENST00000541488 RASSF7Q02833 373 aa9.87□□□□□ -0.83
PRKDC-210ENST00000541488 ZMYND10O75800 440 aa9.86□□□□□ -0.83
PRKDC-210ENST00000541488 CCDC24Q8N4L8 307 aa9.86□□□□□ -0.83
PRKDC-210ENST00000541488 BARGINQ6ZT62 677 aa9.85□□□□□ -0.83
PRKDC-210ENST00000541488 SIAH2O43255 324 aa9.84□□□□□ -0.83
PRKDC-210ENST00000541488 SULF1Q8IWU6 871 aa9.84□□□□□ -0.83
PRKDC-210ENST00000541488 Q3C1V9 767 aa9.83□□□□□ -0.84
PRKDC-210ENST00000541488 WASF2Q9Y6W5 498 aa9.83□□□□□ -0.84
PRKDC-210ENST00000541488 SOBPA7XYQ1 873 aa9.81□□□□□ -0.84
PRKDC-210ENST00000541488 XP32Q5T750 250 aa9.81□□□□□ -0.84
PRKDC-210ENST00000541488 GRIPAP1Q4V328 841 aa9.8□□□□□ -0.84
PRKDC-210ENST00000541488 USB1Q9BQ65 265 aaKnown RBP9.8□□□□□ -0.84
PRKDC-210ENST00000541488 GPCPD1Q9NPB8 672 aa9.8□□□□□ -0.84
PRKDC-210ENST00000541488 TTLL12Q14166 644 aaPredicted RBP9.79□□□□□ -0.84
PRKDC-210ENST00000541488 EHBP1Q8NDI1 1231 aa9.79□□□□□ -0.84
PRKDC-210ENST00000541488 BCANQ96GW7 911 aa9.79□□□□□ -0.84
PRKDC-210ENST00000541488 CD46P15529 392 aa9.78□□□□□ -0.84
PRKDC-210ENST00000541488 CLCN1P35523 988 aa9.78□□□□□ -0.84
PRKDC-210ENST00000541488 RNF225M0QZC1 329 aaPredicted RBP9.77□□□□□ -0.85
PRKDC-210ENST00000541488 SLC24A3Q9HC58 644 aa9.76□□□□□ -0.85
PRKDC-210ENST00000541488 GPAT2Q6NUI2 795 aa9.75□□□□□ -0.85
PRKDC-210ENST00000541488 MRPL14Q6P1L8 145 aaKnown RBP9.75□□□□□ -0.85
PRKDC-210ENST00000541488 HLA-CQ95604 372 aa9.75□□□□□ -0.85
PRKDC-210ENST00000541488 PURBQ96QR8 312 aaKnown RBP9.75□□□□□ -0.85
PRKDC-210ENST00000541488 FAM217BQ9NTX9 383 aaPredicted RBP9.75□□□□□ -0.85
PRKDC-210ENST00000541488 ADAMTS8Q9UP79 889 aa9.75□□□□□ -0.85
PRKDC-210ENST00000541488 KDM4AO75164 1064 aa9.73□□□□□ -0.85
PRKDC-210ENST00000541488 SSTR3P32745 418 aaPredicted RBP9.73□□□□□ -0.85
PRKDC-210ENST00000541488 SCARF1Q14162 830 aa9.73□□□□□ -0.85
PRKDC-210ENST00000541488 TRIM66O15016 1216 aa9.72□□□□□ -0.85
PRKDC-210ENST00000541488 GUCA2AQ02747 115 aa9.72□□□□□ -0.85
PRKDC-210ENST00000541488 GIGYF2Q6Y7W6 1299 aaKnown RBP9.71□□□□□ -0.86
PRKDC-210ENST00000541488 AK7Q96M32 723 aa9.71□□□□□ -0.86
PRKDC-210ENST00000541488 AMHR2Q16671 573 aa9.7□□□□□ -0.86
PRKDC-210ENST00000541488 PTCRAQ6ISU1 281 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms