RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 PRAM1Q96QH2 718 aa13.29□□□□□ -0.28
SNHG1-215ENST00000540904 ADGRB1O14514 1584 aa13.28□□□□□ -0.28
SNHG1-215ENST00000540904 NALCNQ8IZF0 1738 aa13.28□□□□□ -0.28
SNHG1-215ENST00000540904 BRINP3Q76B58 766 aa13.28□□□□□ -0.28
SNHG1-215ENST00000540904 POGKQ9P215 609 aa13.28□□□□□ -0.28
SNHG1-215ENST00000540904 MST1RQ04912 1400 aa13.28□□□□□ -0.28
SNHG1-215ENST00000540904 NBPF1Q3BBV0 1214 aa13.26□□□□□ -0.29
SNHG1-215ENST00000540904 KNDC1Q76NI1 1749 aa13.25□□□□□ -0.29
SNHG1-215ENST00000540904 C1orf167Q5SNV9 1468 aa13.25□□□□□ -0.29
SNHG1-215ENST00000540904 TONSLQ96HA7 1378 aa13.25□□□□□ -0.29
SNHG1-215ENST00000540904 NUTM2FA1L443 756 aa13.25□□□□□ -0.29
SNHG1-215ENST00000540904 CACNB1Q02641 598 aaPredicted RBP13.25□□□□□ -0.29
SNHG1-215ENST00000540904 DLC1Q96QB1 1528 aa13.23□□□□□ -0.29
SNHG1-215ENST00000540904 ORAI2Q96SN7 254 aa13.23□□□□□ -0.29
SNHG1-215ENST00000540904 HIRIP3Q9BW71 556 aaPredicted RBP13.23□□□□□ -0.29
SNHG1-215ENST00000540904 CDC42BPGQ6DT37 1551 aa13.23□□□□□ -0.29
SNHG1-215ENST00000540904 MINK1Q8N4C8 1332 aaPredicted RBP13.22□□□□□ -0.29
SNHG1-215ENST00000540904 DCAF8L1A6NGE4 600 aa13.22□□□□□ -0.29
SNHG1-215ENST00000540904 ESCO1Q5FWF5 840 aa13.22□□□□□ -0.29
SNHG1-215ENST00000540904 DDX17Q92841 729 aaKnown RBP13.22□□□□□ -0.29
SNHG1-215ENST00000540904 NBPF8Q3BBV2 869 aa13.21□□□□□ -0.29
SNHG1-215ENST00000540904 ROCK2O75116 1388 aaKnown RBP13.2□□□□□ -0.3
SNHG1-215ENST00000540904 DISP3Q9P2K9 1392 aa13.2□□□□□ -0.3
SNHG1-215ENST00000540904 PHLPP1O60346 1717 aa13.19□□□□□ -0.3
SNHG1-215ENST00000540904 KIAA1210Q9ULL0 1709 aa13.19□□□□□ -0.3
SNHG1-215ENST00000540904 CCER1Q8TC90 406 aaPredicted RBP13.19□□□□□ -0.3
SNHG1-215ENST00000540904 AHDC1Q5TGY3 1603 aaPredicted RBP13.19□□□□□ -0.3
SNHG1-215ENST00000540904 JCADQ9P266 1359 aa13.18□□□□□ -0.3
SNHG1-215ENST00000540904 CLSPNQ9HAW4 1339 aa13.17□□□□□ -0.3
SNHG1-215ENST00000540904 WASLO00401 505 aaPredicted RBP13.17□□□□□ -0.3
SNHG1-215ENST00000540904 FOXO3O43524 673 aa13.17□□□□□ -0.3
SNHG1-215ENST00000540904 PPP4R3CPQ6ZMV5 832 aa13.17□□□□□ -0.3
SNHG1-215ENST00000540904 COL16A1Q07092 1604 aaPredicted RBP13.17□□□□□ -0.3
SNHG1-215ENST00000540904 LRRC59Q96AG4 307 aaKnown RBP13.16□□□□□ -0.3
SNHG1-215ENST00000540904 NPHP3Q7Z494 1330 aa13.15□□□□□ -0.3
SNHG1-215ENST00000540904 CENPJQ9HC77 1338 aaPredicted RBP13.15□□□□□ -0.3
SNHG1-215ENST00000540904 TRPM1Q7Z4N2 1603 aa13.15□□□□□ -0.3
SNHG1-215ENST00000540904 XPCQ01831 940 aaPredicted RBP13.15□□□□□ -0.3
SNHG1-215ENST00000540904 ARHGEF28Q8N1W1 1705 aaKnown RBP13.15□□□□□ -0.3
SNHG1-215ENST00000540904 ADGRB2O60241 1585 aa13.15□□□□□ -0.3
SNHG1-215ENST00000540904 MED1Q15648 1581 aaPredicted RBP13.15□□□□□ -0.3
SNHG1-215ENST00000540904 FMN2Q9NZ56 1722 aa13.14□□□□□ -0.31
SNHG1-215ENST00000540904 CARD11Q9BXL7 1154 aa13.14□□□□□ -0.31
SNHG1-215ENST00000540904 PHF8Q9UPP1 1060 aa13.14□□□□□ -0.31
SNHG1-215ENST00000540904 EIF3AQ14152 1382 aaKnown RBP13.14□□□□□ -0.31
SNHG1-215ENST00000540904 SOS2Q07890 1332 aaPredicted RBP13.13□□□□□ -0.31
SNHG1-215ENST00000540904 ANKARQ7Z5J8 1434 aa13.13□□□□□ -0.31
SNHG1-215ENST00000540904 NHSL1Q5SYE7 1610 aa13.13□□□□□ -0.31
SNHG1-215ENST00000540904 PMFBP1Q8TBY8 1022 aa13.13□□□□□ -0.31
SNHG1-215ENST00000540904 CDK19Q9BWU1 502 aa13.13□□□□□ -0.31
SNHG1-215ENST00000540904 PRR36Q9H6K5 1346 aa13.13□□□□□ -0.31
SNHG1-215ENST00000540904 GPRASP1Q5JY77 1395 aa13.12□□□□□ -0.31
SNHG1-215ENST00000540904 SPATA31A6Q5VVP1 1343 aa13.12□□□□□ -0.31
SNHG1-215ENST00000540904 RALGAPBQ86X10 1494 aa13.11□□□□□ -0.31
SNHG1-215ENST00000540904 NUTM2BA6NNL0 878 aaPredicted RBP13.11□□□□□ -0.31
SNHG1-215ENST00000540904 NUTM2EB1AL46 878 aaPredicted RBP13.11□□□□□ -0.31
SNHG1-215ENST00000540904 NUTM2AQ8IVF1 878 aaPredicted RBP13.11□□□□□ -0.31
SNHG1-215ENST00000540904 NUDT16Q96DE0 195 aaKnown RBP13.11□□□□□ -0.31
SNHG1-215ENST00000540904 TULP4Q9NRJ4 1543 aa13.11□□□□□ -0.31
SNHG1-215ENST00000540904 PNPLA6Q8IY17 1366 aa13.1□□□□□ -0.31
SNHG1-215ENST00000540904 SRPK2P78362 688 aaKnown RBP13.1□□□□□ -0.31
SNHG1-215ENST00000540904 PSME1Q06323 249 aa13.1□□□□□ -0.31
SNHG1-215ENST00000540904 MEX3CQ5U5Q3 659 aaKnown RBP13.1□□□□□ -0.31
SNHG1-215ENST00000540904 KRT28Q7Z3Y7 464 aa13.1□□□□□ -0.31
SNHG1-215ENST00000540904 TIMELESSQ9UNS1 1208 aa13.1□□□□□ -0.31
SNHG1-215ENST00000540904 PXDNQ92626 1479 aa13.1□□□□□ -0.31
SNHG1-215ENST00000540904 USP32Q8NFA0 1604 aa13.09□□□□□ -0.31
SNHG1-215ENST00000540904 NGDNQ8NEJ9 315 aaKnown RBP13.08□□□□□ -0.32
SNHG1-215ENST00000540904 CABP2Q9NPB3 220 aa13.08□□□□□ -0.32
SNHG1-215ENST00000540904 KIF1AQ12756 1690 aa13.08□□□□□ -0.32
SNHG1-215ENST00000540904 LRP6O75581 1613 aa13.07□□□□□ -0.32
SNHG1-215ENST00000540904 CCDC61Q9Y6R9 512 aa13.07□□□□□ -0.32
SNHG1-215ENST00000540904 ATP7BP35670 1465 aa13.07□□□□□ -0.32
SNHG1-215ENST00000540904 SHPRHQ149N8 1683 aa13.07□□□□□ -0.32
SNHG1-215ENST00000540904 EVC2Q86UK5 1308 aa13.07□□□□□ -0.32
SNHG1-215ENST00000540904 QRICH2Q9H0J4 1663 aa13.06□□□□□ -0.32
SNHG1-215ENST00000540904 LMOD2Q6P5Q4 547 aa13.06□□□□□ -0.32
SNHG1-215ENST00000540904 RGPD8O14715 1765 aaPredicted RBP13.06□□□□□ -0.32
SNHG1-215ENST00000540904 SPATA31A3Q5VYP0 1347 aa13.06□□□□□ -0.32
SNHG1-215ENST00000540904 ADAMTS2O95450 1211 aa13.05□□□□□ -0.32
SNHG1-215ENST00000540904 PLEKHG5O94827 1062 aa13.04□□□□□ -0.32
SNHG1-215ENST00000540904 ILDR2Q71H61 639 aa13.04□□□□□ -0.32
SNHG1-215ENST00000540904 RGS17Q9UGC6 210 aaPredicted RBP13.04□□□□□ -0.32
SNHG1-215ENST00000540904 SBNO1A3KN83 1393 aa13.04□□□□□ -0.32
SNHG1-215ENST00000540904 ST20-MTHFSA0A0A6YYL1 179 aa13.03□□□□□ -0.32
SNHG1-215ENST00000540904 PAK3O75914 559 aaPredicted RBP13.03□□□□□ -0.32
SNHG1-215ENST00000540904 ACEP12821 1306 aa13.03□□□□□ -0.32
SNHG1-215ENST00000540904 TNS3Q68CZ2 1445 aa13.03□□□□□ -0.32
SNHG1-215ENST00000540904 PPIP5K1Q6PFW1 1433 aa13.03□□□□□ -0.32
SNHG1-215ENST00000540904 PLEKHG3A1L390 1219 aa13.02□□□□□ -0.33
SNHG1-215ENST00000540904 HOXD11P31277 338 aaPredicted RBP13.02□□□□□ -0.33
SNHG1-215ENST00000540904 C8orf37Q96NL8 207 aa13.02□□□□□ -0.33
SNHG1-215ENST00000540904 CABP1Q9NZU7 370 aa13.02□□□□□ -0.33
SNHG1-215ENST00000540904 SBNO2Q9Y2G9 1366 aa13.02□□□□□ -0.33
SNHG1-215ENST00000540904 HAP1P54257 671 aaPredicted RBP13.01□□□□□ -0.33
SNHG1-215ENST00000540904 POLR3AO14802 1390 aaPredicted RBP13.01□□□□□ -0.33
SNHG1-215ENST00000540904 ARHGEF10O15013 1369 aa13.01□□□□□ -0.33
SNHG1-215ENST00000540904 USP47Q96K76 1375 aa13.01□□□□□ -0.33
SNHG1-215ENST00000540904 CABLES1Q8TDN4 633 aa13□□□□□ -0.33
SNHG1-215ENST00000540904 NGLY1Q96IV0 654 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms