RNA–Protein interactions for RNA: ENST00000540683.1

CDCA3-208, Transcript of cell division cycle associated 3, humanhuman

TSL 2 BASIC

Gene CDCA3, Length 985 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-208ENST00000540683 C1orf167Q5SNV9 1468 aa15.15■□□□□ 0.02
CDCA3-208ENST00000540683 YTHDC2Q9H6S0 1430 aaKnown RBP15.14■□□□□ 0.01
CDCA3-208ENST00000540683 NRXN1Q9ULB1 1477 aa15.14■□□□□ 0.01
CDCA3-208ENST00000540683 STK26Q9P289 416 aa15.13■□□□□ 0.01
CDCA3-208ENST00000540683 NPHP3Q7Z494 1330 aa15.13■□□□□ 0.01
CDCA3-208ENST00000540683 PPP4R3CPQ6ZMV5 832 aa15.12■□□□□ 0.01
CDCA3-208ENST00000540683 EIF3AQ14152 1382 aaKnown RBP15.11■□□□□ 0.01
CDCA3-208ENST00000540683 ESCO1Q5FWF5 840 aa15.09■□□□□ 0.01
CDCA3-208ENST00000540683 TMEM132EQ6IEE7 984 aa15.09■□□□□ 0.01
CDCA3-208ENST00000540683 POGKQ9P215 609 aa15.09■□□□□ 0.01
CDCA3-208ENST00000540683 SOS2Q07890 1332 aaPredicted RBP15.08■□□□□ 0
CDCA3-208ENST00000540683 DLC1Q96QB1 1528 aa15.07■□□□□ 0
CDCA3-208ENST00000540683 DCAF11Q8TEB1 546 aa15.07■□□□□ 0
CDCA3-208ENST00000540683 KIF1AQ12756 1690 aa15.06■□□□□ 0
CDCA3-208ENST00000540683 NUTM2BA6NNL0 878 aaPredicted RBP15.06■□□□□ 0
CDCA3-208ENST00000540683 NUTM2EB1AL46 878 aaPredicted RBP15.06■□□□□ 0
CDCA3-208ENST00000540683 CFAP70Q5T0N1 1121 aa15.06■□□□□ 0
CDCA3-208ENST00000540683 WAPLQ7Z5K2 1190 aa15.06■□□□□ 0
CDCA3-208ENST00000540683 NUTM2AQ8IVF1 878 aaPredicted RBP15.06■□□□□ 0
CDCA3-208ENST00000540683 RGS17Q9UGC6 210 aaPredicted RBP15.06■□□□□ 0
CDCA3-208ENST00000540683 ORAI2Q96SN7 254 aa15.05■□□□□ -0
CDCA3-208ENST00000540683 PNPLA6Q8IY17 1366 aa15.05■□□□□ -0
CDCA3-208ENST00000540683 PSME1Q06323 249 aa15.04■□□□□ -0
CDCA3-208ENST00000540683 KDM2AQ9Y2K7 1162 aa15.04■□□□□ -0
CDCA3-208ENST00000540683 FMN2Q9NZ56 1722 aa15.03■□□□□ -0
CDCA3-208ENST00000540683 PRAM1Q96QH2 718 aa15.03■□□□□ -0
CDCA3-208ENST00000540683 LRP6O75581 1613 aa15.03■□□□□ -0
CDCA3-208ENST00000540683 ANKARQ7Z5J8 1434 aa15.01□□□□□ -0.01
CDCA3-208ENST00000540683 RXRBP28702 533 aa15.01□□□□□ -0.01
CDCA3-208ENST00000540683 POTEAQ6S8J7 498 aa15.01□□□□□ -0.01
CDCA3-208ENST00000540683 COL22A1Q8NFW1 1626 aaPredicted RBP15□□□□□ -0.01
CDCA3-208ENST00000540683 ADGRB2O60241 1585 aa15□□□□□ -0.01
CDCA3-208ENST00000540683 FOXO3O43524 673 aa15□□□□□ -0.01
CDCA3-208ENST00000540683 NGLY1Q96IV0 654 aa15□□□□□ -0.01
CDCA3-208ENST00000540683 CDK12Q9NYV4 1490 aaPredicted RBP15□□□□□ -0.01
CDCA3-208ENST00000540683 KIAA1210Q9ULL0 1709 aa15□□□□□ -0.01
CDCA3-208ENST00000540683 ADGRB1O14514 1584 aa14.99□□□□□ -0.01
CDCA3-208ENST00000540683 AFF2P51816 1311 aa14.99□□□□□ -0.01
CDCA3-208ENST00000540683 C8orf37Q96NL8 207 aa14.99□□□□□ -0.01
CDCA3-208ENST00000540683 PHF8Q9UPP1 1060 aa14.99□□□□□ -0.01
CDCA3-208ENST00000540683 PLEKHH1Q9ULM0 1364 aa14.98□□□□□ -0.01
CDCA3-208ENST00000540683 DDX17Q92841 729 aaKnown RBP14.98□□□□□ -0.01
CDCA3-208ENST00000540683 TRAK1Q9UPV9 953 aa14.98□□□□□ -0.01
CDCA3-208ENST00000540683 PXDNQ92626 1479 aa14.97□□□□□ -0.01
CDCA3-208ENST00000540683 ARHGEF10O15013 1369 aa14.97□□□□□ -0.01
CDCA3-208ENST00000540683 NUTM2FA1L443 756 aa14.96□□□□□ -0.01
CDCA3-208ENST00000540683 HAP1P54257 671 aaPredicted RBP14.96□□□□□ -0.01
CDCA3-208ENST00000540683 RBM6P78332 1123 aaKnown RBP14.96□□□□□ -0.01
CDCA3-208ENST00000540683 SAFB2Q14151 953 aaKnown RBP eCLIP14.96□□□□□ -0.01
CDCA3-208ENST00000540683 NCBP3Q53F19 620 aaKnown RBP14.96□□□□□ -0.01
CDCA3-208ENST00000540683 KRT28Q7Z3Y7 464 aa14.96□□□□□ -0.01
CDCA3-208ENST00000540683 PIAS4Q8N2W9 510 aaPredicted RBP14.96□□□□□ -0.01
CDCA3-208ENST00000540683 GPRASP1Q5JY77 1395 aa14.96□□□□□ -0.02
CDCA3-208ENST00000540683 ADAMTS2O95450 1211 aa14.95□□□□□ -0.02
CDCA3-208ENST00000540683 TRPC5Q9UL62 973 aaPredicted RBP14.95□□□□□ -0.02
CDCA3-208ENST00000540683 SBNO1A3KN83 1393 aa14.95□□□□□ -0.02
CDCA3-208ENST00000540683 SPATA31A3Q5VYP0 1347 aa14.94□□□□□ -0.02
CDCA3-208ENST00000540683 QTRT2Q9H974 415 aaKnown RBP14.94□□□□□ -0.02
CDCA3-208ENST00000540683 USP21Q9UK80 565 aa14.94□□□□□ -0.02
CDCA3-208ENST00000540683 WASLO00401 505 aaPredicted RBP14.93□□□□□ -0.02
CDCA3-208ENST00000540683 FNBP4Q8N3X1 1017 aaPredicted RBP14.93□□□□□ -0.02
CDCA3-208ENST00000540683 TNS3Q68CZ2 1445 aa14.92□□□□□ -0.02
CDCA3-208ENST00000540683 TULP4Q9NRJ4 1543 aa14.92□□□□□ -0.02
CDCA3-208ENST00000540683 ITSN1Q15811 1721 aa14.92□□□□□ -0.02
CDCA3-208ENST00000540683 MINK1Q8N4C8 1332 aaPredicted RBP14.92□□□□□ -0.02
CDCA3-208ENST00000540683 MARF1Q9Y4F3 1742 aaKnown RBP14.91□□□□□ -0.02
CDCA3-208ENST00000540683 ARHGEF28Q8N1W1 1705 aaKnown RBP14.9□□□□□ -0.02
CDCA3-208ENST00000540683 XPCQ01831 940 aaPredicted RBP14.9□□□□□ -0.02
CDCA3-208ENST00000540683 NGDNQ8NEJ9 315 aaKnown RBP14.9□□□□□ -0.02
CDCA3-208ENST00000540683 RGPD8O14715 1765 aaPredicted RBP14.9□□□□□ -0.02
CDCA3-208ENST00000540683 LMOD2Q6P5Q4 547 aa14.89□□□□□ -0.03
CDCA3-208ENST00000540683 HIRIP3Q9BW71 556 aaPredicted RBP14.88□□□□□ -0.03
CDCA3-208ENST00000540683 PMFBP1Q8TBY8 1022 aa14.86□□□□□ -0.03
CDCA3-208ENST00000540683 CCDC61Q9Y6R9 512 aa14.86□□□□□ -0.03
CDCA3-208ENST00000540683 CENPJQ9HC77 1338 aaPredicted RBP14.86□□□□□ -0.03
CDCA3-208ENST00000540683 TRIM26Q12899 539 aaPredicted RBP14.85□□□□□ -0.03
CDCA3-208ENST00000540683 NUDT16Q96DE0 195 aaKnown RBP14.85□□□□□ -0.03
CDCA3-208ENST00000540683 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.85□□□□□ -0.03
CDCA3-208ENST00000540683 USP32Q8NFA0 1604 aa14.84□□□□□ -0.03
CDCA3-208ENST00000540683 ATRNO75882 1429 aa14.84□□□□□ -0.03
CDCA3-208ENST00000540683 UNC5CLQ8IV45 518 aa14.84□□□□□ -0.03
CDCA3-208ENST00000540683 L3MBTL2Q969R5 705 aa14.84□□□□□ -0.03
CDCA3-208ENST00000540683 CDK19Q9BWU1 502 aa14.84□□□□□ -0.03
CDCA3-208ENST00000540683 BRD4O60885 1362 aaPredicted RBP14.84□□□□□ -0.03
CDCA3-208ENST00000540683 ATAD2Q6PL18 1390 aa14.84□□□□□ -0.03
CDCA3-208ENST00000540683 ATP7BP35670 1465 aa14.83□□□□□ -0.03
CDCA3-208ENST00000540683 PAK3O75914 559 aaPredicted RBP14.82□□□□□ -0.04
CDCA3-208ENST00000540683 SRPK2P78362 688 aaKnown RBP14.82□□□□□ -0.04
CDCA3-208ENST00000540683 NEUROD1Q13562 356 aa14.82□□□□□ -0.04
CDCA3-208ENST00000540683 ROCK2O75116 1388 aaKnown RBP14.82□□□□□ -0.04
CDCA3-208ENST00000540683 NWD2Q9ULI1 1742 aa14.81□□□□□ -0.04
CDCA3-208ENST00000540683 SLC24A1O60721 1099 aa14.81□□□□□ -0.04
CDCA3-208ENST00000540683 GJD4Q96KN9 370 aaPredicted RBP14.81□□□□□ -0.04
CDCA3-208ENST00000540683 EVC2Q86UK5 1308 aa14.81□□□□□ -0.04
CDCA3-208ENST00000540683 BCL9LQ86UU0 1499 aa14.81□□□□□ -0.04
CDCA3-208ENST00000540683 SLIT2O94813 1529 aa14.81□□□□□ -0.04
CDCA3-208ENST00000540683 PLEKHG3A1L390 1219 aa14.8□□□□□ -0.04
CDCA3-208ENST00000540683 NBPF1Q3BBV0 1214 aa14.8□□□□□ -0.04
CDCA3-208ENST00000540683 CCDC125Q86Z20 511 aa14.8□□□□□ -0.04
CDCA3-208ENST00000540683 UPF1Q92900 1129 aaKnown RBP eCLIP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms