RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 ADGRB2O60241 1585 aa15.28■□□□□ 0.04
CSDE1-217ENST00000534699 EIF3AQ14152 1382 aaKnown RBP15.26■□□□□ 0.03
CSDE1-217ENST00000534699 RBM33Q96EV2 1170 aaKnown RBP15.26■□□□□ 0.03
CSDE1-217ENST00000534699 FOXD1Q16676 465 aa15.24■□□□□ 0.03
CSDE1-217ENST00000534699 SOS2Q07890 1332 aaPredicted RBP15.24■□□□□ 0.03
CSDE1-217ENST00000534699 CDK12Q9NYV4 1490 aaPredicted RBP15.24■□□□□ 0.03
CSDE1-217ENST00000534699 ZNF772Q68DY9 489 aaPredicted RBP15.24■□□□□ 0.03
CSDE1-217ENST00000534699 ANKARQ7Z5J8 1434 aa15.23■□□□□ 0.03
CSDE1-217ENST00000534699 RGL3Q3MIN7 710 aa15.22■□□□□ 0.03
CSDE1-217ENST00000534699 ADGRB1O14514 1584 aa15.22■□□□□ 0.03
CSDE1-217ENST00000534699 NPHP3Q7Z494 1330 aa15.21■□□□□ 0.03
CSDE1-217ENST00000534699 PNPLA6Q8IY17 1366 aa15.21■□□□□ 0.03
CSDE1-217ENST00000534699 RGS17Q9UGC6 210 aaPredicted RBP15.2■□□□□ 0.02
CSDE1-217ENST00000534699 MARF1Q9Y4F3 1742 aaKnown RBP15.19■□□□□ 0.02
CSDE1-217ENST00000534699 LRP6O75581 1613 aa15.19■□□□□ 0.02
CSDE1-217ENST00000534699 SENP3Q9H4L4 574 aaPredicted RBP15.18■□□□□ 0.02
CSDE1-217ENST00000534699 PXDNQ92626 1479 aa15.17■□□□□ 0.02
CSDE1-217ENST00000534699 ITSN1Q15811 1721 aa15.16■□□□□ 0.02
CSDE1-217ENST00000534699 MEX3CQ5U5Q3 659 aaKnown RBP15.15■□□□□ 0.02
CSDE1-217ENST00000534699 SBNO1A3KN83 1393 aa15.14■□□□□ 0.01
CSDE1-217ENST00000534699 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.14■□□□□ 0.01
CSDE1-217ENST00000534699 ARHGEF28Q8N1W1 1705 aaKnown RBP15.14■□□□□ 0.01
CSDE1-217ENST00000534699 PSME1Q06323 249 aa15.13■□□□□ 0.01
CSDE1-217ENST00000534699 CFAP70Q5T0N1 1121 aa15.13■□□□□ 0.01
CSDE1-217ENST00000534699 TULP4Q9NRJ4 1543 aa15.12■□□□□ 0.01
CSDE1-217ENST00000534699 TMEM132EQ6IEE7 984 aa15.1■□□□□ 0.01
CSDE1-217ENST00000534699 POTEAQ6S8J7 498 aa15.1■□□□□ 0.01
CSDE1-217ENST00000534699 STK26Q9P289 416 aa15.1■□□□□ 0.01
CSDE1-217ENST00000534699 DCAF11Q8TEB1 546 aa15.1■□□□□ 0.01
CSDE1-217ENST00000534699 ORAI2Q96SN7 254 aa15.1■□□□□ 0.01
CSDE1-217ENST00000534699 PLEKHH1Q9ULM0 1364 aa15.1■□□□□ 0.01
CSDE1-217ENST00000534699 ESCO1Q5FWF5 840 aa15.1■□□□□ 0.01
CSDE1-217ENST00000534699 WAPLQ7Z5K2 1190 aa15.1■□□□□ 0.01
CSDE1-217ENST00000534699 POGKQ9P215 609 aa15.09■□□□□ 0.01
CSDE1-217ENST00000534699 USP32Q8NFA0 1604 aa15.09■□□□□ 0.01
CSDE1-217ENST00000534699 ARHGEF10O15013 1369 aa15.09■□□□□ 0.01
CSDE1-217ENST00000534699 RGPD8O14715 1765 aaPredicted RBP15.08■□□□□ 0.01
CSDE1-217ENST00000534699 BRD4O60885 1362 aaPredicted RBP15.08■□□□□ 0
CSDE1-217ENST00000534699 NWD2Q9ULI1 1742 aa15.07■□□□□ 0
CSDE1-217ENST00000534699 SPATA31A3Q5VYP0 1347 aa15.07■□□□□ 0
CSDE1-217ENST00000534699 PRAM1Q96QH2 718 aa15.07■□□□□ 0
CSDE1-217ENST00000534699 PHF8Q9UPP1 1060 aa15.07■□□□□ 0
CSDE1-217ENST00000534699 TNS3Q68CZ2 1445 aa15.07■□□□□ 0
CSDE1-217ENST00000534699 FNBP4Q8N3X1 1017 aaPredicted RBP15.07■□□□□ 0
CSDE1-217ENST00000534699 TRPM3Q9HCF6 1732 aaPredicted RBP15.06■□□□□ 0
CSDE1-217ENST00000534699 RXRBP28702 533 aa15.06■□□□□ 0
CSDE1-217ENST00000534699 AFF2P51816 1311 aa15.06■□□□□ 0
CSDE1-217ENST00000534699 RBM6P78332 1123 aaKnown RBP15.05■□□□□ 0
CSDE1-217ENST00000534699 NGLY1Q96IV0 654 aa15.05■□□□□ -0
CSDE1-217ENST00000534699 TOPAZ1Q8N9V7 1692 aa15.05■□□□□ -0
CSDE1-217ENST00000534699 ABCA3Q99758 1704 aa15.04■□□□□ -0
CSDE1-217ENST00000534699 ALS2Q96Q42 1657 aa15.04■□□□□ -0
CSDE1-217ENST00000534699 ATRNO75882 1429 aa15.04■□□□□ -0
CSDE1-217ENST00000534699 WASLO00401 505 aaPredicted RBP15.03■□□□□ -0
CSDE1-217ENST00000534699 KRT28Q7Z3Y7 464 aa15.03■□□□□ -0
CSDE1-217ENST00000534699 ATP7BP35670 1465 aa15.03■□□□□ -0
CSDE1-217ENST00000534699 TRPC5Q9UL62 973 aaPredicted RBP15.02■□□□□ -0
CSDE1-217ENST00000534699 GPRASP1Q5JY77 1395 aa15.02■□□□□ -0
CSDE1-217ENST00000534699 NUTM2BA6NNL0 878 aaPredicted RBP15.02□□□□□ -0.01
CSDE1-217ENST00000534699 NUTM2EB1AL46 878 aaPredicted RBP15.02□□□□□ -0.01
CSDE1-217ENST00000534699 NUTM2AQ8IVF1 878 aaPredicted RBP15.02□□□□□ -0.01
CSDE1-217ENST00000534699 TRPM1Q7Z4N2 1603 aa15.02□□□□□ -0.01
CSDE1-217ENST00000534699 FOXO3O43524 673 aa15□□□□□ -0.01
CSDE1-217ENST00000534699 KDM2AQ9Y2K7 1162 aa15□□□□□ -0.01
CSDE1-217ENST00000534699 SLIT2O94813 1529 aa15□□□□□ -0.01
CSDE1-217ENST00000534699 TRAK1Q9UPV9 953 aa15□□□□□ -0.01
CSDE1-217ENST00000534699 CRYBG1Q9Y4K1 1723 aa14.99□□□□□ -0.01
CSDE1-217ENST00000534699 DDX17Q92841 729 aaKnown RBP14.99□□□□□ -0.01
CSDE1-217ENST00000534699 QTRT2Q9H974 415 aaKnown RBP14.99□□□□□ -0.01
CSDE1-217ENST00000534699 COL14A1Q05707 1796 aaKnown RBP14.98□□□□□ -0.01
CSDE1-217ENST00000534699 POLR3AO14802 1390 aaPredicted RBP14.98□□□□□ -0.01
CSDE1-217ENST00000534699 C8orf37Q96NL8 207 aa14.98□□□□□ -0.01
CSDE1-217ENST00000534699 QRICH2Q9H0J4 1663 aa14.97□□□□□ -0.01
CSDE1-217ENST00000534699 USP21Q9UK80 565 aa14.97□□□□□ -0.01
CSDE1-217ENST00000534699 PLCH1Q4KWH8 1693 aa14.96□□□□□ -0.01
CSDE1-217ENST00000534699 PLEKHG3A1L390 1219 aa14.96□□□□□ -0.01
CSDE1-217ENST00000534699 BCL9LQ86UU0 1499 aa14.95□□□□□ -0.02
CSDE1-217ENST00000534699 SBNO2Q9Y2G9 1366 aa14.94□□□□□ -0.02
CSDE1-217ENST00000534699 SLC24A1O60721 1099 aa14.94□□□□□ -0.02
CSDE1-217ENST00000534699 RGS12O14924 1447 aa14.94□□□□□ -0.02
CSDE1-217ENST00000534699 CENPJQ9HC77 1338 aaPredicted RBP14.94□□□□□ -0.02
CSDE1-217ENST00000534699 ATAD2Q6PL18 1390 aa14.93□□□□□ -0.02
CSDE1-217ENST00000534699 MINK1Q8N4C8 1332 aaPredicted RBP14.93□□□□□ -0.02
CSDE1-217ENST00000534699 CCDC125Q86Z20 511 aa14.93□□□□□ -0.02
CSDE1-217ENST00000534699 UNC5CLQ8IV45 518 aa14.93□□□□□ -0.02
CSDE1-217ENST00000534699 CCDC61Q9Y6R9 512 aa14.93□□□□□ -0.02
CSDE1-217ENST00000534699 NRAPQ86VF7 1730 aa14.93□□□□□ -0.02
CSDE1-217ENST00000534699 PRR36Q9H6K5 1346 aa14.93□□□□□ -0.02
CSDE1-217ENST00000534699 NUDT16Q96DE0 195 aaKnown RBP14.93□□□□□ -0.02
CSDE1-217ENST00000534699 ADAMTS2O95450 1211 aa14.92□□□□□ -0.02
CSDE1-217ENST00000534699 PHRF1Q9P1Y6 1649 aaKnown RBP14.91□□□□□ -0.02
CSDE1-217ENST00000534699 L3MBTL2Q969R5 705 aa14.91□□□□□ -0.02
CSDE1-217ENST00000534699 PUS7Q96PZ0 661 aaKnown RBP14.91□□□□□ -0.02
CSDE1-217ENST00000534699 CDK19Q9BWU1 502 aa14.91□□□□□ -0.02
CSDE1-217ENST00000534699 TRIM26Q12899 539 aaPredicted RBP14.9□□□□□ -0.02
CSDE1-217ENST00000534699 VPS72Q15906 364 aa14.9□□□□□ -0.02
CSDE1-217ENST00000534699 NGDNQ8NEJ9 315 aaKnown RBP14.9□□□□□ -0.02
CSDE1-217ENST00000534699 UPF1Q92900 1129 aaKnown RBP eCLIP14.89□□□□□ -0.03
CSDE1-217ENST00000534699 GJD4Q96KN9 370 aaPredicted RBP14.89□□□□□ -0.03
CSDE1-217ENST00000534699 SAFB2Q14151 953 aaKnown RBP eCLIP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms