RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 PHF23Q9BUL5 403 aaPredicted RBP35.52■■■■□ 3.28
USP48-214ENST00000532737 ADGRL3Q9HAR2 1447 aa35.49■■■■□ 3.27
USP48-214ENST00000532737 PRAM1Q96QH2 718 aa35.49■■■■□ 3.27
USP48-214ENST00000532737 DLC1Q96QB1 1528 aa35.48■■■■□ 3.27
USP48-214ENST00000532737 TRPM1Q7Z4N2 1603 aa35.48■■■■□ 3.27
USP48-214ENST00000532737 ATF3P18847 181 aa35.45■■■■□ 3.27
USP48-214ENST00000532737 SIPA1L2Q9P2F8 1722 aaPredicted RBP35.45■■■■□ 3.27
USP48-214ENST00000532737 ROCK2O75116 1388 aaKnown RBP35.44■■■■□ 3.26
USP48-214ENST00000532737 CADPS2Q86UW7 1296 aa35.44■■■■□ 3.26
USP48-214ENST00000532737 POGKQ9P215 609 aa35.44■■■■□ 3.26
USP48-214ENST00000532737 SAFB2Q14151 953 aaKnown RBP eCLIP35.43■■■■□ 3.26
USP48-214ENST00000532737 NALCNQ8IZF0 1738 aa35.43■■■■□ 3.26
USP48-214ENST00000532737 DCCP43146 1447 aa35.4■■■■□ 3.26
USP48-214ENST00000532737 SLAIN2Q9P270 581 aa35.4■■■■□ 3.26
USP48-214ENST00000532737 GPRASP1Q5JY77 1395 aa35.38■■■■□ 3.26
USP48-214ENST00000532737 RALGAPBQ86X10 1494 aa35.38■■■■□ 3.25
USP48-214ENST00000532737 RGS17Q9UGC6 210 aaPredicted RBP35.35■■■■□ 3.25
USP48-214ENST00000532737 PHLPP1O60346 1717 aa35.33■■■■□ 3.25
USP48-214ENST00000532737 ARHGEF28Q8N1W1 1705 aaKnown RBP35.33■■■■□ 3.25
USP48-214ENST00000532737 CARD11Q9BXL7 1154 aa35.33■■■■□ 3.25
USP48-214ENST00000532737 MST1RQ04912 1400 aa35.31■■■■□ 3.24
USP48-214ENST00000532737 MINK1Q8N4C8 1332 aaPredicted RBP35.31■■■■□ 3.24
USP48-214ENST00000532737 CDC42BPGQ6DT37 1551 aa35.29■■■■□ 3.24
USP48-214ENST00000532737 HIRIP3Q9BW71 556 aaPredicted RBP35.28■■■■□ 3.24
USP48-214ENST00000532737 CENPJQ9HC77 1338 aaPredicted RBP35.26■■■■□ 3.23
USP48-214ENST00000532737 C1orf167Q5SNV9 1468 aa35.23■■■■□ 3.23
USP48-214ENST00000532737 COL16A1Q07092 1604 aaPredicted RBP35.23■■■■□ 3.23
USP48-214ENST00000532737 NUTM2FA1L443 756 aa35.22■■■■□ 3.23
USP48-214ENST00000532737 BRINP3Q76B58 766 aa35.21■■■■□ 3.23
USP48-214ENST00000532737 ADGRB2O60241 1585 aa35.2■■■■□ 3.23
USP48-214ENST00000532737 EIF3AQ14152 1382 aaKnown RBP35.18■■■■□ 3.22
USP48-214ENST00000532737 WASLO00401 505 aaPredicted RBP35.18■■■■□ 3.22
USP48-214ENST00000532737 ORAI2Q96SN7 254 aa35.18■■■■□ 3.22
USP48-214ENST00000532737 FMN2Q9NZ56 1722 aa35.15■■■■□ 3.22
USP48-214ENST00000532737 JCADQ9P266 1359 aa35.13■■■■□ 3.21
USP48-214ENST00000532737 ESCO1Q5FWF5 840 aa35.12■■■■□ 3.21
USP48-214ENST00000532737 POTEAQ6S8J7 498 aa35.12■■■■□ 3.21
USP48-214ENST00000532737 AHDC1Q5TGY3 1603 aaPredicted RBP35.12■■■■□ 3.21
USP48-214ENST00000532737 CDK19Q9BWU1 502 aa35.11■■■■□ 3.21
USP48-214ENST00000532737 QRICH2Q9H0J4 1663 aa35.1■■■■□ 3.21
USP48-214ENST00000532737 PRR36Q9H6K5 1346 aa35.08■■■■□ 3.21
USP48-214ENST00000532737 ANKARQ7Z5J8 1434 aa35.06■■■■□ 3.2
USP48-214ENST00000532737 SHPRHQ149N8 1683 aa35.05■■■■□ 3.2
USP48-214ENST00000532737 USP47Q96K76 1375 aa35.05■■■■□ 3.2
USP48-214ENST00000532737 ST20-MTHFSA0A0A6YYL1 179 aa35.05■■■■□ 3.2
USP48-214ENST00000532737 DDX17Q92841 729 aaKnown RBP35.05■■■■□ 3.2
USP48-214ENST00000532737 TULP4Q9NRJ4 1543 aa35.04■■■■□ 3.2
USP48-214ENST00000532737 USP32Q8NFA0 1604 aa35.03■■■■□ 3.2
USP48-214ENST00000532737 NUDT16Q96DE0 195 aaKnown RBP35.02■■■■□ 3.2
USP48-214ENST00000532737 SBNO2Q9Y2G9 1366 aa35.01■■■■□ 3.2
USP48-214ENST00000532737 LRP6O75581 1613 aa35.01■■■■□ 3.19
USP48-214ENST00000532737 CABP2Q9NPB3 220 aa35■■■■□ 3.19
USP48-214ENST00000532737 PHF8Q9UPP1 1060 aa35■■■■□ 3.19
USP48-214ENST00000532737 EVC2Q86UK5 1308 aa35■■■■□ 3.19
USP48-214ENST00000532737 SRPK2P78362 688 aaKnown RBP34.99■■■■□ 3.19
USP48-214ENST00000532737 RGPD8O14715 1765 aaPredicted RBP34.98■■■■□ 3.19
USP48-214ENST00000532737 TESK2Q96S53 571 aa34.98■■■■□ 3.19
USP48-214ENST00000532737 ATP7BP35670 1465 aa34.97■■■■□ 3.19
USP48-214ENST00000532737 FOXO3O43524 673 aa34.97■■■■□ 3.19
USP48-214ENST00000532737 PMFBP1Q8TBY8 1022 aa34.95■■■■□ 3.19
USP48-214ENST00000532737 SPATA31A6Q5VVP1 1343 aa34.95■■■■□ 3.19
USP48-214ENST00000532737 NHSL1Q5SYE7 1610 aa34.95■■■■□ 3.18
USP48-214ENST00000532737 CCDC61Q9Y6R9 512 aa34.93■■■■□ 3.18
USP48-214ENST00000532737 NPHP3Q7Z494 1330 aa34.92■■■■□ 3.18
USP48-214ENST00000532737 SOS2Q07890 1332 aaPredicted RBP34.91■■■■□ 3.18
USP48-214ENST00000532737 XPCQ01831 940 aaPredicted RBP34.9■■■■□ 3.18
USP48-214ENST00000532737 KIF1AQ12756 1690 aa34.89■■■■□ 3.18
USP48-214ENST00000532737 EIF4G2P78344 907 aaKnown RBP eCLIP34.87■■■■□ 3.17
USP48-214ENST00000532737 PLEKHG3A1L390 1219 aa34.85■■■■□ 3.17
USP48-214ENST00000532737 HSPA5P11021 654 aaKnown RBP34.85■■■■□ 3.17
USP48-214ENST00000532737 KRT28Q7Z3Y7 464 aa34.85■■■■□ 3.17
USP48-214ENST00000532737 PXDNQ92626 1479 aa34.84■■■■□ 3.17
USP48-214ENST00000532737 LRRC59Q96AG4 307 aaKnown RBP34.84■■■■□ 3.17
USP48-214ENST00000532737 SLC24A1O60721 1099 aa34.83■■■■□ 3.17
USP48-214ENST00000532737 NGDNQ8NEJ9 315 aaKnown RBP34.83■■■■□ 3.17
USP48-214ENST00000532737 PPIP5K1Q6PFW1 1433 aa34.82■■■■□ 3.17
USP48-214ENST00000532737 PSME1Q06323 249 aa34.82■■■■□ 3.16
USP48-214ENST00000532737 CABP1Q9NZU7 370 aa34.82■■■■□ 3.16
USP48-214ENST00000532737 TOPAZ1Q8N9V7 1692 aa34.82■■■■□ 3.16
USP48-214ENST00000532737 ITSN1Q15811 1721 aa34.8■■■■□ 3.16
USP48-214ENST00000532737 ACEP12821 1306 aa34.8■■■■□ 3.16
USP48-214ENST00000532737 TMF1P82094 1093 aa34.79■■■■□ 3.16
USP48-214ENST00000532737 ATAD2Q6PL18 1390 aa34.78■■■■□ 3.16
USP48-214ENST00000532737 MEX3CQ5U5Q3 659 aaKnown RBP34.78■■■■□ 3.16
USP48-214ENST00000532737 PUS7Q96PZ0 661 aaKnown RBP34.78■■■■□ 3.16
USP48-214ENST00000532737 POLR3AO14802 1390 aaPredicted RBP34.76■■■■□ 3.16
USP48-214ENST00000532737 ZNF772Q68DY9 489 aaPredicted RBP34.74■■■■□ 3.15
USP48-214ENST00000532737 SPATA31A3Q5VYP0 1347 aa34.73■■■■□ 3.15
USP48-214ENST00000532737 PNPLA6Q8IY17 1366 aa34.73■■■■□ 3.15
USP48-214ENST00000532737 SBNO1A3KN83 1393 aa34.71■■■■□ 3.15
USP48-214ENST00000532737 TMC1Q8TDI8 760 aa34.69■■■■□ 3.14
USP48-214ENST00000532737 NUTM2BA6NNL0 878 aaPredicted RBP34.68■■■■□ 3.14
USP48-214ENST00000532737 NUTM2EB1AL46 878 aaPredicted RBP34.68■■■■□ 3.14
USP48-214ENST00000532737 NUTM2AQ8IVF1 878 aaPredicted RBP34.68■■■■□ 3.14
USP48-214ENST00000532737 SLC12A5Q9H2X9 1139 aa34.68■■■■□ 3.14
USP48-214ENST00000532737 CDCA8Q53HL2 280 aa34.66■■■■□ 3.14
USP48-214ENST00000532737 TNS3Q68CZ2 1445 aa34.65■■■■□ 3.14
USP48-214ENST00000532737 PAK3O75914 559 aaPredicted RBP34.63■■■■□ 3.13
USP48-214ENST00000532737 TRPM3Q9HCF6 1732 aaPredicted RBP34.63■■■■□ 3.13
USP48-214ENST00000532737 LMOD2Q6P5Q4 547 aa34.62■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms