RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	NUTM2E	B1AL46	878 aa	Predicted RBP	14	□□□□□ -0.17
CHD7-208	ENST00000528280	NUTM2A	Q8IVF1	878 aa	Predicted RBP	14	□□□□□ -0.17
CHD7-208	ENST00000528280	QTRT2	Q9H974	415 aa	Known RBP	14	□□□□□ -0.17
CHD7-208	ENST00000528280	TMEM132E	Q6IEE7	984 aa		13.99	□□□□□ -0.17
CHD7-208	ENST00000528280	PIK3C2G	O75747	1445 aa		13.98	□□□□□ -0.17
CHD7-208	ENST00000528280	MST1R	Q04912	1400 aa		13.98	□□□□□ -0.17
CHD7-208	ENST00000528280	DCAF11	Q8TEB1	546 aa		13.98	□□□□□ -0.17
CHD7-208	ENST00000528280	ATAD2	Q6PL18	1390 aa		13.97	□□□□□ -0.17
CHD7-208	ENST00000528280	CFAP70	Q5T0N1	1121 aa		13.97	□□□□□ -0.17
CHD7-208	ENST00000528280	MYOM2	P54296	1465 aa		13.96	□□□□□ -0.17
CHD7-208	ENST00000528280	KDM2A	Q9Y2K7	1162 aa		13.96	□□□□□ -0.17
CHD7-208	ENST00000528280	TECPR2	O15040	1411 aa		13.96	□□□□□ -0.18
CHD7-208	ENST00000528280	IFT172	Q9UG01	1749 aa		13.95	□□□□□ -0.18
CHD7-208	ENST00000528280	NRXN1	Q9ULB1	1477 aa		13.95	□□□□□ -0.18
CHD7-208	ENST00000528280	WAPL	Q7Z5K2	1190 aa		13.95	□□□□□ -0.18
CHD7-208	ENST00000528280	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.95	□□□□□ -0.18
CHD7-208	ENST00000528280	C1orf167	Q5SNV9	1468 aa		13.94	□□□□□ -0.18
CHD7-208	ENST00000528280	ESCO1	Q5FWF5	840 aa		13.93	□□□□□ -0.18
CHD7-208	ENST00000528280	NGLY1	Q96IV0	654 aa		13.93	□□□□□ -0.18
CHD7-208	ENST00000528280	POGK	Q9P215	609 aa		13.93	□□□□□ -0.18
CHD7-208	ENST00000528280	ASXL1	Q8IXJ9	1541 aa		13.93	□□□□□ -0.18
CHD7-208	ENST00000528280	EP400	Q96L91	3159 aa		13.93	□□□□□ -0.18
CHD7-208	ENST00000528280	ORAI2	Q96SN7	254 aa		13.92	□□□□□ -0.18
CHD7-208	ENST00000528280	NHSL1	Q5SYE7	1610 aa		13.92	□□□□□ -0.18
CHD7-208	ENST00000528280	LAMC1	P11047	1609 aa		13.91	□□□□□ -0.18
CHD7-208	ENST00000528280	CCDC125	Q86Z20	511 aa		13.91	□□□□□ -0.18
CHD7-208	ENST00000528280	C8orf37	Q96NL8	207 aa		13.91	□□□□□ -0.18
CHD7-208	ENST00000528280	NPHP3	Q7Z494	1330 aa		13.9	□□□□□ -0.18
CHD7-208	ENST00000528280	NALCN	Q8IZF0	1738 aa		13.9	□□□□□ -0.18
CHD7-208	ENST00000528280	LRP5	O75197	1615 aa		13.9	□□□□□ -0.19
CHD7-208	ENST00000528280	SOS2	Q07890	1332 aa	Predicted RBP	13.9	□□□□□ -0.19
CHD7-208	ENST00000528280	PRAM1	Q96QH2	718 aa		13.89	□□□□□ -0.19
CHD7-208	ENST00000528280	TRAK1	Q9UPV9	953 aa		13.88	□□□□□ -0.19
CHD7-208	ENST00000528280	CDC42BPG	Q6DT37	1551 aa		13.88	□□□□□ -0.19
CHD7-208	ENST00000528280	KNDC1	Q76NI1	1749 aa		13.87	□□□□□ -0.19
CHD7-208	ENST00000528280	FOXO3	O43524	673 aa		13.87	□□□□□ -0.19
CHD7-208	ENST00000528280	DDX17	Q92841	729 aa	Known RBP	13.87	□□□□□ -0.19
CHD7-208	ENST00000528280	PLEKHH1	Q9ULM0	1364 aa		13.86	□□□□□ -0.19
CHD7-208	ENST00000528280	PSME1	Q06323	249 aa		13.86	□□□□□ -0.19
CHD7-208	ENST00000528280	DLC1	Q96QB1	1528 aa		13.85	□□□□□ -0.19
CHD7-208	ENST00000528280	NUTM2F	A1L443	756 aa		13.85	□□□□□ -0.19
CHD7-208	ENST00000528280	EIF3A	Q14152	1382 aa	Known RBP	13.84	□□□□□ -0.19
CHD7-208	ENST00000528280	PNPLA6	Q8IY17	1366 aa		13.84	□□□□□ -0.19
CHD7-208	ENST00000528280	TRIM26	Q12899	539 aa	Predicted RBP	13.84	□□□□□ -0.19
CHD7-208	ENST00000528280	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
CHD7-208	ENST00000528280	PHF8	Q9UPP1	1060 aa		13.84	□□□□□ -0.19
CHD7-208	ENST00000528280	TRPC5	Q9UL62	973 aa	Predicted RBP	13.83	□□□□□ -0.2
CHD7-208	ENST00000528280	KRT28	Q7Z3Y7	464 aa		13.82	□□□□□ -0.2
CHD7-208	ENST00000528280	USP21	Q9UK80	565 aa		13.82	□□□□□ -0.2
CHD7-208	ENST00000528280	ADGRB1	O14514	1584 aa		13.81	□□□□□ -0.2
CHD7-208	ENST00000528280	WASL	O00401	505 aa	Predicted RBP	13.81	□□□□□ -0.2
CHD7-208	ENST00000528280	ADAMTS2	O95450	1211 aa		13.8	□□□□□ -0.2
CHD7-208	ENST00000528280	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.8	□□□□□ -0.2
CHD7-208	ENST00000528280	ATRN	O75882	1429 aa		13.8	□□□□□ -0.2
CHD7-208	ENST00000528280	ANKAR	Q7Z5J8	1434 aa		13.8	□□□□□ -0.2
CHD7-208	ENST00000528280	L3MBTL2	Q969R5	705 aa		13.79	□□□□□ -0.2
CHD7-208	ENST00000528280	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.79	□□□□□ -0.2
CHD7-208	ENST00000528280	NEUROD1	Q13562	356 aa		13.78	□□□□□ -0.2
CHD7-208	ENST00000528280	SPATA31A3	Q5VYP0	1347 aa		13.78	□□□□□ -0.2
CHD7-208	ENST00000528280	FMN2	Q9NZ56	1722 aa		13.78	□□□□□ -0.2
CHD7-208	ENST00000528280	XPC	Q01831	940 aa	Predicted RBP	13.77	□□□□□ -0.21
CHD7-208	ENST00000528280	BRWD3	Q6RI45	1802 aa		13.77	□□□□□ -0.21
CHD7-208	ENST00000528280	SIN3A	Q96ST3	1273 aa		13.77	□□□□□ -0.21
CHD7-208	ENST00000528280	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.77	□□□□□ -0.21
CHD7-208	ENST00000528280	MARF1	Q9Y4F3	1742 aa	Known RBP	13.77	□□□□□ -0.21
CHD7-208	ENST00000528280	KIAA1210	Q9ULL0	1709 aa		13.76	□□□□□ -0.21
CHD7-208	ENST00000528280	KIF1A	Q12756	1690 aa		13.76	□□□□□ -0.21
CHD7-208	ENST00000528280	PXDN	Q92626	1479 aa		13.76	□□□□□ -0.21
CHD7-208	ENST00000528280	BLM	P54132	1417 aa	Predicted RBP	13.76	□□□□□ -0.21
CHD7-208	ENST00000528280	GPRASP1	Q5JY77	1395 aa		13.76	□□□□□ -0.21
CHD7-208	ENST00000528280	SBNO1	A3KN83	1393 aa		13.75	□□□□□ -0.21
CHD7-208	ENST00000528280	NBPF1	Q3BBV0	1214 aa		13.75	□□□□□ -0.21
CHD7-208	ENST00000528280	NGDN	Q8NEJ9	315 aa	Known RBP	13.75	□□□□□ -0.21
CHD7-208	ENST00000528280	PMFBP1	Q8TBY8	1022 aa		13.75	□□□□□ -0.21
CHD7-208	ENST00000528280	HAP1	P54257	671 aa	Predicted RBP	13.74	□□□□□ -0.21
CHD7-208	ENST00000528280	NUDT16	Q96DE0	195 aa	Known RBP	13.74	□□□□□ -0.21
CHD7-208	ENST00000528280	CDK19	Q9BWU1	502 aa		13.74	□□□□□ -0.21
CHD7-208	ENST00000528280	ADGRB2	O60241	1585 aa		13.74	□□□□□ -0.21
CHD7-208	ENST00000528280	ARHGEF10	O15013	1369 aa		13.73	□□□□□ -0.21
CHD7-208	ENST00000528280	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.73	□□□□□ -0.21
CHD7-208	ENST00000528280	LMOD2	Q6P5Q4	547 aa		13.73	□□□□□ -0.21
CHD7-208	ENST00000528280	DEFB132	Q7Z7B7	95 aa		13.73	□□□□□ -0.21
CHD7-208	ENST00000528280	CCDC61	Q9Y6R9	512 aa		13.73	□□□□□ -0.21
CHD7-208	ENST00000528280	BCL9L	Q86UU0	1499 aa		13.72	□□□□□ -0.21
CHD7-208	ENST00000528280	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.71	□□□□□ -0.21
CHD7-208	ENST00000528280	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.7	□□□□□ -0.22
CHD7-208	ENST00000528280	TULP4	Q9NRJ4	1543 aa		13.7	□□□□□ -0.22
CHD7-208	ENST00000528280	GJD4	Q96KN9	370 aa	Predicted RBP	13.7	□□□□□ -0.22
CHD7-208	ENST00000528280	TNS3	Q68CZ2	1445 aa		13.7	□□□□□ -0.22
CHD7-208	ENST00000528280	RGPD8	O14715	1765 aa	Predicted RBP	13.7	□□□□□ -0.22
CHD7-208	ENST00000528280	PRR36	Q9H6K5	1346 aa		13.69	□□□□□ -0.22
CHD7-208	ENST00000528280	PLEKHG3	A1L390	1219 aa		13.69	□□□□□ -0.22
CHD7-208	ENST00000528280	SRPK2	P78362	688 aa	Known RBP	13.69	□□□□□ -0.22
CHD7-208	ENST00000528280	PAK3	O75914	559 aa	Predicted RBP	13.68	□□□□□ -0.22
CHD7-208	ENST00000528280	SF3B2	Q13435	895 aa	Known RBP	13.67	□□□□□ -0.22
CHD7-208	ENST00000528280	NBPF8	Q3BBV2	869 aa		13.67	□□□□□ -0.22
CHD7-208	ENST00000528280	UNC5CL	Q8IV45	518 aa		13.67	□□□□□ -0.22
CHD7-208	ENST00000528280	ROCK2	O75116	1388 aa	Known RBP	13.67	□□□□□ -0.22
CHD7-208	ENST00000528280	TONSL	Q96HA7	1378 aa		13.67	□□□□□ -0.22
CHD7-208	ENST00000528280	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms