RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 MINK1Q8N4C8 1332 aaPredicted RBP19.35■□□□□ 0.69
CD44-224ENST00000526669 HSPA5P11021 654 aaKnown RBP19.35■□□□□ 0.69
CD44-224ENST00000526669 FMN2Q9NZ56 1722 aa19.34■□□□□ 0.69
CD44-224ENST00000526669 ST20-MTHFSA0A0A6YYL1 179 aa19.34■□□□□ 0.69
CD44-224ENST00000526669 EIF4G2P78344 907 aaKnown RBP eCLIP19.34■□□□□ 0.69
CD44-224ENST00000526669 C14orf37Q86TY3 774 aa19.34■□□□□ 0.69
CD44-224ENST00000526669 ADGRB2O60241 1585 aa19.33■□□□□ 0.69
CD44-224ENST00000526669 SIRT1Q96EB6 747 aa19.33■□□□□ 0.68
CD44-224ENST00000526669 ADGRL3Q9HAR2 1447 aa19.33■□□□□ 0.68
CD44-224ENST00000526669 TULP4Q9NRJ4 1543 aa19.3■□□□□ 0.68
CD44-224ENST00000526669 CDC42BPGQ6DT37 1551 aa19.3■□□□□ 0.68
CD44-224ENST00000526669 USP32Q8NFA0 1604 aa19.27■□□□□ 0.68
CD44-224ENST00000526669 ITSN1Q15811 1721 aa19.27■□□□□ 0.68
CD44-224ENST00000526669 MSH6P52701 1360 aa19.27■□□□□ 0.68
CD44-224ENST00000526669 NCOA3Q9Y6Q9 1424 aa19.26■□□□□ 0.67
CD44-224ENST00000526669 TESK2Q96S53 571 aa19.25■□□□□ 0.67
CD44-224ENST00000526669 DISP3Q9P2K9 1392 aa19.24■□□□□ 0.67
CD44-224ENST00000526669 SBNO2Q9Y2G9 1366 aa19.24■□□□□ 0.67
CD44-224ENST00000526669 NUTM2FA1L443 756 aa19.24■□□□□ 0.67
CD44-224ENST00000526669 TOPAZ1Q8N9V7 1692 aa19.23■□□□□ 0.67
CD44-224ENST00000526669 CERKQ8TCT0 537 aa19.22■□□□□ 0.67
CD44-224ENST00000526669 C19orf44Q9H6X5 657 aa19.22■□□□□ 0.67
CD44-224ENST00000526669 MYOM1P52179 1685 aa19.21■□□□□ 0.67
CD44-224ENST00000526669 WASLO00401 505 aaPredicted RBP19.21■□□□□ 0.67
CD44-224ENST00000526669 CDK19Q9BWU1 502 aa19.21■□□□□ 0.67
CD44-224ENST00000526669 EVC2Q86UK5 1308 aa19.21■□□□□ 0.67
CD44-224ENST00000526669 DCCP43146 1447 aa19.2■□□□□ 0.66
CD44-224ENST00000526669 ATF3P18847 181 aa19.2■□□□□ 0.66
CD44-224ENST00000526669 CABP2Q9NPB3 220 aa19.2■□□□□ 0.66
CD44-224ENST00000526669 SRPK2P78362 688 aaKnown RBP19.19■□□□□ 0.66
CD44-224ENST00000526669 TMF1P82094 1093 aa19.19■□□□□ 0.66
CD44-224ENST00000526669 POLR3GLQ9BT43 218 aa19.19■□□□□ 0.66
CD44-224ENST00000526669 IQSEC2Q5JU85 1478 aa19.19■□□□□ 0.66
CD44-224ENST00000526669 MST1RQ04912 1400 aa19.18■□□□□ 0.66
CD44-224ENST00000526669 ATP7BP35670 1465 aa19.18■□□□□ 0.66
CD44-224ENST00000526669 PRR36Q9H6K5 1346 aa19.17■□□□□ 0.66
CD44-224ENST00000526669 C11orf95C9JLR9 678 aaPredicted RBP19.16■□□□□ 0.66
CD44-224ENST00000526669 CADPS2Q86UW7 1296 aa19.16■□□□□ 0.66
CD44-224ENST00000526669 ROBO1Q9Y6N7 1651 aa19.16■□□□□ 0.66
CD44-224ENST00000526669 AKAP12Q02952 1782 aa19.16■□□□□ 0.66
CD44-224ENST00000526669 C1orf167Q5SNV9 1468 aa19.15■□□□□ 0.66
CD44-224ENST00000526669 KIF1AQ12756 1690 aa19.14■□□□□ 0.66
CD44-224ENST00000526669 NUDT16Q96DE0 195 aaKnown RBP19.13■□□□□ 0.65
CD44-224ENST00000526669 ANKARQ7Z5J8 1434 aa19.13■□□□□ 0.65
CD44-224ENST00000526669 UBAP1LF5GYI3 381 aa19.12■□□□□ 0.65
CD44-224ENST00000526669 KIF7Q2M1P5 1343 aa19.11■□□□□ 0.65
CD44-224ENST00000526669 PPIP5K1Q6PFW1 1433 aa19.1■□□□□ 0.65
CD44-224ENST00000526669 SLC24A1O60721 1099 aa19.1■□□□□ 0.65
CD44-224ENST00000526669 ORAI2Q96SN7 254 aa19.1■□□□□ 0.65
CD44-224ENST00000526669 NHSL1Q5SYE7 1610 aa19.1■□□□□ 0.65
CD44-224ENST00000526669 ATAD2Q6PL18 1390 aa19.09■□□□□ 0.65
CD44-224ENST00000526669 CCDC7Q96M83 1385 aa19.09■□□□□ 0.65
CD44-224ENST00000526669 MON2Q7Z3U7 1717 aa19.09■□□□□ 0.65
CD44-224ENST00000526669 SCAF1Q9H7N4 1312 aaKnown RBP19.09■□□□□ 0.65
CD44-224ENST00000526669 ESCO1Q5FWF5 840 aa19.09■□□□□ 0.65
CD44-224ENST00000526669 PMFBP1Q8TBY8 1022 aa19.09■□□□□ 0.65
CD44-224ENST00000526669 SLAIN2Q9P270 581 aa19.09■□□□□ 0.65
CD44-224ENST00000526669 WASHC2AQ641Q2 1341 aa19.08■□□□□ 0.65
CD44-224ENST00000526669 TOM1O60784 492 aa19.08■□□□□ 0.64
CD44-224ENST00000526669 PIP4K2BP78356 416 aa19.08■□□□□ 0.64
CD44-224ENST00000526669 CDCA8Q53HL2 280 aa19.08■□□□□ 0.64
CD44-224ENST00000526669 TMC1Q8TDI8 760 aa19.08■□□□□ 0.64
CD44-224ENST00000526669 PHLPP1O60346 1717 aa19.07■□□□□ 0.64
CD44-224ENST00000526669 CABP1Q9NZU7 370 aa19.06■□□□□ 0.64
CD44-224ENST00000526669 ZNF316A6NFI3 1004 aaPredicted RBP19.05■□□□□ 0.64
CD44-224ENST00000526669 BRINP3Q76B58 766 aa19.05■□□□□ 0.64
CD44-224ENST00000526669 PHF8Q9UPP1 1060 aa19.05■□□□□ 0.64
CD44-224ENST00000526669 CCDC61Q9Y6R9 512 aa19.05■□□□□ 0.64
CD44-224ENST00000526669 SLC12A5Q9H2X9 1139 aa19.04■□□□□ 0.64
CD44-224ENST00000526669 TRPM3Q9HCF6 1732 aaPredicted RBP19.03■□□□□ 0.64
CD44-224ENST00000526669 DDX17Q92841 729 aaKnown RBP19.03■□□□□ 0.64
CD44-224ENST00000526669 PUS7Q96PZ0 661 aaKnown RBP19.03■□□□□ 0.64
CD44-224ENST00000526669 CD163L1Q9NR16 1453 aa19.03■□□□□ 0.64
CD44-224ENST00000526669 NRKQ7Z2Y5 1582 aa19.02■□□□□ 0.64
CD44-224ENST00000526669 KIF20BQ96Q89 1820 aa19.02■□□□□ 0.64
CD44-224ENST00000526669 ACEP12821 1306 aa19.01■□□□□ 0.63
CD44-224ENST00000526669 NGDNQ8NEJ9 315 aaKnown RBP19.01■□□□□ 0.63
CD44-224ENST00000526669 PLEKHG3A1L390 1219 aa19■□□□□ 0.63
CD44-224ENST00000526669 XPCQ01831 940 aaPredicted RBP19■□□□□ 0.63
CD44-224ENST00000526669 AHDC1Q5TGY3 1603 aaPredicted RBP19■□□□□ 0.63
CD44-224ENST00000526669 A0A1W2PP64 1363 aa18.99■□□□□ 0.63
CD44-224ENST00000526669 FOXO3O43524 673 aa18.99■□□□□ 0.63
CD44-224ENST00000526669 NINLQ9Y2I6 1382 aa18.98■□□□□ 0.63
CD44-224ENST00000526669 POLR3AO14802 1390 aaPredicted RBP18.97■□□□□ 0.63
CD44-224ENST00000526669 PXDNQ92626 1479 aa18.97■□□□□ 0.63
CD44-224ENST00000526669 COL16A1Q07092 1604 aaPredicted RBP18.96■□□□□ 0.63
CD44-224ENST00000526669 KTN1Q86UP2 1357 aaKnown RBP18.96■□□□□ 0.63
CD44-224ENST00000526669 ANKRD36BQ8N2N9 1353 aa18.96■□□□□ 0.63
CD44-224ENST00000526669 ALS2Q96Q42 1657 aa18.96■□□□□ 0.63
CD44-224ENST00000526669 HDGFL2Q7Z4V5 671 aaPredicted RBP18.96■□□□□ 0.63
CD44-224ENST00000526669 CPSF1Q10570 1443 aaKnown RBP18.96■□□□□ 0.63
CD44-224ENST00000526669 USP6P35125 1406 aa18.95■□□□□ 0.62
CD44-224ENST00000526669 NPHP3Q7Z494 1330 aa18.95■□□□□ 0.62
CD44-224ENST00000526669 PIK3C2AO00443 1686 aa18.95■□□□□ 0.62
CD44-224ENST00000526669 PSME1Q06323 249 aa18.94■□□□□ 0.62
CD44-224ENST00000526669 DDX10Q13206 875 aaKnown RBP18.94■□□□□ 0.62
CD44-224ENST00000526669 KRT28Q7Z3Y7 464 aa18.94■□□□□ 0.62
CD44-224ENST00000526669 PANK3Q9H999 370 aa18.94■□□□□ 0.62
CD44-224ENST00000526669 TERF2IPQ9NYB0 399 aa18.94■□□□□ 0.62
CD44-224ENST00000526669 ANKRD26Q9UPS8 1709 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms