RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 SRCAPQ6ZRS2 3230 aa21.65■■□□□ 1.06
CPSF1-201ENST00000526271 RPGRIP1LQ68CZ1 1315 aa21.65■■□□□ 1.06
CPSF1-201ENST00000526271 MYOM2P54296 1465 aa21.64■■□□□ 1.06
CPSF1-201ENST00000526271 RBM6P78332 1123 aaKnown RBP21.64■■□□□ 1.05
CPSF1-201ENST00000526271 SLC4A1APQ9BWU0 796 aaKnown RBP21.64■■□□□ 1.05
CPSF1-201ENST00000526271 EP400Q96L91 3159 aa21.64■■□□□ 1.05
CPSF1-201ENST00000526271 MARF1Q9Y4F3 1742 aaKnown RBP21.63■■□□□ 1.05
CPSF1-201ENST00000526271 PLEKHH1Q9ULM0 1364 aa21.62■■□□□ 1.05
CPSF1-201ENST00000526271 TECPR2O15040 1411 aa21.62■■□□□ 1.05
CPSF1-201ENST00000526271 KNDC1Q76NI1 1749 aa21.61■■□□□ 1.05
CPSF1-201ENST00000526271 ATRNO75882 1429 aa21.6■■□□□ 1.05
CPSF1-201ENST00000526271 WAPLQ7Z5K2 1190 aa21.59■■□□□ 1.05
CPSF1-201ENST00000526271 FNBP4Q8N3X1 1017 aaPredicted RBP21.59■■□□□ 1.05
CPSF1-201ENST00000526271 NGLY1Q96IV0 654 aa21.59■■□□□ 1.05
CPSF1-201ENST00000526271 BCL9LQ86UU0 1499 aa21.58■■□□□ 1.05
CPSF1-201ENST00000526271 FMN2Q9NZ56 1722 aa21.58■■□□□ 1.05
CPSF1-201ENST00000526271 XPCQ01831 940 aaPredicted RBP21.57■■□□□ 1.04
CPSF1-201ENST00000526271 RGPD8O14715 1765 aaPredicted RBP21.56■■□□□ 1.04
CPSF1-201ENST00000526271 PIK3C2GO75747 1445 aa21.56■■□□□ 1.04
CPSF1-201ENST00000526271 LRPPRCP42704 1394 aaKnown RBP21.56■■□□□ 1.04
CPSF1-201ENST00000526271 TMEM132EQ6IEE7 984 aa21.55■■□□□ 1.04
CPSF1-201ENST00000526271 USP21Q9UK80 565 aa21.55■■□□□ 1.04
CPSF1-201ENST00000526271 RGL3Q3MIN7 710 aa21.54■■□□□ 1.04
CPSF1-201ENST00000526271 ABCC11Q96J66 1382 aa21.53■■□□□ 1.04
CPSF1-201ENST00000526271 FOXO3O43524 673 aa21.53■■□□□ 1.04
CPSF1-201ENST00000526271 ESCO1Q5FWF5 840 aa21.53■■□□□ 1.04
CPSF1-201ENST00000526271 STK26Q9P289 416 aa21.53■■□□□ 1.04
CPSF1-201ENST00000526271 NUTM2FA1L443 756 aa21.52■■□□□ 1.04
CPSF1-201ENST00000526271 CCDC144AA2RUR9 1427 aa21.52■■□□□ 1.04
CPSF1-201ENST00000526271 MPHOSPH9Q99550 1183 aa21.51■■□□□ 1.03
CPSF1-201ENST00000526271 NPHP3Q7Z494 1330 aa21.51■■□□□ 1.03
CPSF1-201ENST00000526271 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.5■■□□□ 1.03
CPSF1-201ENST00000526271 GLI3P10071 1580 aa21.5■■□□□ 1.03
CPSF1-201ENST00000526271 TRPC5Q9UL62 973 aaPredicted RBP21.5■■□□□ 1.03
CPSF1-201ENST00000526271 YTHDC2Q9H6S0 1430 aaKnown RBP21.49■■□□□ 1.03
CPSF1-201ENST00000526271 NRXN1Q9ULB1 1477 aa21.49■■□□□ 1.03
CPSF1-201ENST00000526271 ANKRD30BQ9BXX2 1392 aa21.48■■□□□ 1.03
CPSF1-201ENST00000526271 SLIT2O94813 1529 aa21.47■■□□□ 1.03
CPSF1-201ENST00000526271 BRWD3Q6RI45 1802 aa21.46■■□□□ 1.03
CPSF1-201ENST00000526271 USP32Q8NFA0 1604 aa21.46■■□□□ 1.03
CPSF1-201ENST00000526271 KIF1AQ12756 1690 aa21.46■■□□□ 1.03
CPSF1-201ENST00000526271 ATAD2Q6PL18 1390 aa21.46■■□□□ 1.03
CPSF1-201ENST00000526271 ABCA3Q99758 1704 aa21.46■■□□□ 1.03
CPSF1-201ENST00000526271 SPATA31A3Q5VYP0 1347 aa21.45■■□□□ 1.02
CPSF1-201ENST00000526271 C14orf93Q9H972 538 aaKnown RBP21.42■■□□□ 1.02
CPSF1-201ENST00000526271 RALGAPBQ86X10 1494 aa21.41■■□□□ 1.02
CPSF1-201ENST00000526271 CFAP70Q5T0N1 1121 aa21.4■■□□□ 1.02
CPSF1-201ENST00000526271 GJD4Q96KN9 370 aaPredicted RBP21.4■■□□□ 1.02
CPSF1-201ENST00000526271 PLCH1Q4KWH8 1693 aa21.39■■□□□ 1.01
CPSF1-201ENST00000526271 ADGRB1O14514 1584 aa21.39■■□□□ 1.01
CPSF1-201ENST00000526271 SIRT1Q96EB6 747 aa21.38■■□□□ 1.01
CPSF1-201ENST00000526271 KRT28Q7Z3Y7 464 aa21.37■■□□□ 1.01
CPSF1-201ENST00000526271 CABLES1Q8TDN4 633 aa21.37■■□□□ 1.01
CPSF1-201ENST00000526271 TRPM3Q9HCF6 1732 aaPredicted RBP21.37■■□□□ 1.01
CPSF1-201ENST00000526271 TNS3Q68CZ2 1445 aa21.36■■□□□ 1.01
CPSF1-201ENST00000526271 UNC5CLQ8IV45 518 aa21.35■■□□□ 1.01
CPSF1-201ENST00000526271 DLC1Q96QB1 1528 aa21.34■■□□□ 1.01
CPSF1-201ENST00000526271 ADGRB2O60241 1585 aa21.34■■□□□ 1.01
CPSF1-201ENST00000526271 NRAPQ86VF7 1730 aa21.34■■□□□ 1.01
CPSF1-201ENST00000526271 NWD2Q9ULI1 1742 aa21.33■■□□□ 1.01
CPSF1-201ENST00000526271 PHF8Q9UPP1 1060 aa21.33■■□□□ 1.01
CPSF1-201ENST00000526271 SAFB2Q14151 953 aaKnown RBP eCLIP21.32■■□□□ 1
CPSF1-201ENST00000526271 PRAM1Q96QH2 718 aa21.32■■□□□ 1
CPSF1-201ENST00000526271 CRYBG1Q9Y4K1 1723 aa21.32■■□□□ 1
CPSF1-201ENST00000526271 ALS2Q96Q42 1657 aa21.31■■□□□ 1
CPSF1-201ENST00000526271 SBNO1A3KN83 1393 aa21.3■■□□□ 1
CPSF1-201ENST00000526271 PRR36Q9H6K5 1346 aa21.29■■□□□ 1
CPSF1-201ENST00000526271 DHX57Q6P158 1386 aaKnown RBP21.28■■□□□ 1
CPSF1-201ENST00000526271 RAB3GAP2Q9H2M9 1393 aa21.27■■□□□ 1
CPSF1-201ENST00000526271 ONECUT3O60422 494 aaPredicted RBP21.26■□□□□ 0.99
CPSF1-201ENST00000526271 PLEKHG5O94827 1062 aa21.26■□□□□ 0.99
CPSF1-201ENST00000526271 DEFB132Q7Z7B7 95 aa21.26■□□□□ 0.99
CPSF1-201ENST00000526271 PMFBP1Q8TBY8 1022 aa21.26■□□□□ 0.99
CPSF1-201ENST00000526271 ANKARQ7Z5J8 1434 aa21.26■□□□□ 0.99
CPSF1-201ENST00000526271 FAM83GA6ND36 823 aa21.25■□□□□ 0.99
CPSF1-201ENST00000526271 BLMP54132 1417 aaPredicted RBP21.25■□□□□ 0.99
CPSF1-201ENST00000526271 VPS72Q15906 364 aa21.25■□□□□ 0.99
CPSF1-201ENST00000526271 SEPT12Q8IYM1 358 aa21.25■□□□□ 0.99
CPSF1-201ENST00000526271 CCDC125Q86Z20 511 aa21.24■□□□□ 0.99
CPSF1-201ENST00000526271 HIRIP3Q9BW71 556 aaPredicted RBP21.22■□□□□ 0.99
CPSF1-201ENST00000526271 ZRANB1Q9UGI0 708 aa21.22■□□□□ 0.99
CPSF1-201ENST00000526271 ARHGEF28Q8N1W1 1705 aaKnown RBP21.21■□□□□ 0.99
CPSF1-201ENST00000526271 TULP4Q9NRJ4 1543 aa21.2■□□□□ 0.98
CPSF1-201ENST00000526271 PSME1Q06323 249 aa21.2■□□□□ 0.98
CPSF1-201ENST00000526271 TRAK1Q9UPV9 953 aa21.2■□□□□ 0.98
CPSF1-201ENST00000526271 ARHGEF10O15013 1369 aa21.2■□□□□ 0.98
CPSF1-201ENST00000526271 COL14A1Q05707 1796 aaKnown RBP21.18■□□□□ 0.98
CPSF1-201ENST00000526271 MINK1Q8N4C8 1332 aaPredicted RBP21.18■□□□□ 0.98
CPSF1-201ENST00000526271 LMOD2Q6P5Q4 547 aa21.17■□□□□ 0.98
CPSF1-201ENST00000526271 POGKQ9P215 609 aa21.17■□□□□ 0.98
CPSF1-201ENST00000526271 THSD7AQ9UPZ6 1657 aa21.16■□□□□ 0.98
CPSF1-201ENST00000526271 ACIN1Q9UKV3 1341 aaKnown RBP21.16■□□□□ 0.98
CPSF1-201ENST00000526271 ATP7BP35670 1465 aa21.15■□□□□ 0.98
CPSF1-201ENST00000526271 KRT27Q7Z3Y8 459 aa21.14■□□□□ 0.97
CPSF1-201ENST00000526271 WASLO00401 505 aaPredicted RBP21.13■□□□□ 0.97
CPSF1-201ENST00000526271 HAP1P54257 671 aaPredicted RBP21.13■□□□□ 0.97
CPSF1-201ENST00000526271 BTG4Q9NY30 223 aa21.13■□□□□ 0.97
CPSF1-201ENST00000526271 KDM2AQ9Y2K7 1162 aa21.13■□□□□ 0.97
CPSF1-201ENST00000526271 PHRF1Q9P1Y6 1649 aaKnown RBP21.13■□□□□ 0.97
CPSF1-201ENST00000526271 TOPAZ1Q8N9V7 1692 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms