RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 IDI1Q13907 227 aa10.11□□□□□ -0.79
HDAC3-216ENST00000523088 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.11□□□□□ -0.79
HDAC3-216ENST00000523088 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.1□□□□□ -0.79
HDAC3-216ENST00000523088 LTKP29376 864 aa10.09□□□□□ -0.79
HDAC3-216ENST00000523088 CNPY4Q8N129 248 aa10.09□□□□□ -0.79
HDAC3-216ENST00000523088 NUP155O75694 1391 aa10.09□□□□□ -0.79
HDAC3-216ENST00000523088 ZFYVE9O95405 1425 aa10.08□□□□□ -0.8
HDAC3-216ENST00000523088 XIRP1Q702N8 1843 aaKnown RBP10.08□□□□□ -0.8
HDAC3-216ENST00000523088 PLEKHG1Q9ULL1 1385 aa10.08□□□□□ -0.8
HDAC3-216ENST00000523088 CHD2O14647 1828 aaKnown RBP10.07□□□□□ -0.8
HDAC3-216ENST00000523088 DISP3Q9P2K9 1392 aa10.07□□□□□ -0.8
HDAC3-216ENST00000523088 C11orf95C9JLR9 678 aaPredicted RBP10.07□□□□□ -0.8
HDAC3-216ENST00000523088 CLGNO14967 610 aa10.07□□□□□ -0.8
HDAC3-216ENST00000523088 RRP9O43818 475 aaKnown RBP10.07□□□□□ -0.8
HDAC3-216ENST00000523088 PPP1R15AO75807 674 aaPredicted RBP10.07□□□□□ -0.8
HDAC3-216ENST00000523088 CANXP27824 592 aaKnown RBP10.07□□□□□ -0.8
HDAC3-216ENST00000523088 CNGB1Q14028 1251 aaPredicted RBP10.07□□□□□ -0.8
HDAC3-216ENST00000523088 RTL5Q5HYW3 569 aaPredicted RBP10.07□□□□□ -0.8
HDAC3-216ENST00000523088 BBXQ8WY36 941 aaPredicted RBP10.07□□□□□ -0.8
HDAC3-216ENST00000523088 CFAP44Q96MT7 982 aa10.07□□□□□ -0.8
HDAC3-216ENST00000523088 PHF23Q9BUL5 403 aaPredicted RBP10.07□□□□□ -0.8
HDAC3-216ENST00000523088 KIF1BO60333 1816 aa10.07□□□□□ -0.8
HDAC3-216ENST00000523088 RIMS2Q9UQ26 1411 aa10.07□□□□□ -0.8
HDAC3-216ENST00000523088 PIK3R4Q99570 1358 aa10.06□□□□□ -0.8
HDAC3-216ENST00000523088 MAFGO15525 162 aa10.06□□□□□ -0.8
HDAC3-216ENST00000523088 KCNA6P17658 529 aa10.06□□□□□ -0.8
HDAC3-216ENST00000523088 HFM1A2PYH4 1435 aa10.06□□□□□ -0.8
HDAC3-216ENST00000523088 FANCIQ9NVI1 1328 aa10.06□□□□□ -0.8
HDAC3-216ENST00000523088 ITGAEP38570 1179 aa10.05□□□□□ -0.8
HDAC3-216ENST00000523088 TRPM2O94759 1503 aa10.05□□□□□ -0.8
HDAC3-216ENST00000523088 NCOA3Q9Y6Q9 1424 aa10.05□□□□□ -0.8
HDAC3-216ENST00000523088 ALKQ9UM73 1620 aa10.04□□□□□ -0.8
HDAC3-216ENST00000523088 PIP4K2BP78356 416 aa10.04□□□□□ -0.8
HDAC3-216ENST00000523088 CERS3Q8IU89 383 aa10.04□□□□□ -0.8
HDAC3-216ENST00000523088 NAIPQ13075 1403 aa10.04□□□□□ -0.8
HDAC3-216ENST00000523088 PHF14O94880 888 aa10.03□□□□□ -0.8
HDAC3-216ENST00000523088 DNAJC2Q99543 621 aaKnown RBP10.03□□□□□ -0.8
HDAC3-216ENST00000523088 MSH6P52701 1360 aa10.02□□□□□ -0.8
HDAC3-216ENST00000523088 SETBP1Q9Y6X0 1596 aa10.02□□□□□ -0.81
HDAC3-216ENST00000523088 GTF2E1P29083 439 aaPredicted RBP10.02□□□□□ -0.81
HDAC3-216ENST00000523088 PCGF6Q9BYE7 350 aa10.02□□□□□ -0.81
HDAC3-216ENST00000523088 TBX22Q9Y458 520 aa10.02□□□□□ -0.81
HDAC3-216ENST00000523088 TMEM94Q12767 1356 aa10.01□□□□□ -0.81
HDAC3-216ENST00000523088 FAM135BQ49AJ0 1406 aa10.01□□□□□ -0.81
HDAC3-216ENST00000523088 CHGAP10645 457 aaKnown RBP10.01□□□□□ -0.81
HDAC3-216ENST00000523088 CHMP4BQ9H444 224 aaKnown RBP10.01□□□□□ -0.81
HDAC3-216ENST00000523088 MED1Q15648 1581 aaPredicted RBP10.01□□□□□ -0.81
HDAC3-216ENST00000523088 HSPA1LP34931 641 aa10□□□□□ -0.81
HDAC3-216ENST00000523088 CALD1Q05682 793 aaKnown RBP10□□□□□ -0.81
HDAC3-216ENST00000523088 NBR1Q14596 966 aa10□□□□□ -0.81
HDAC3-216ENST00000523088 ANP32BQ92688 251 aaKnown RBP10□□□□□ -0.81
HDAC3-216ENST00000523088 ZNF622Q969S3 477 aaKnown RBP eCLIP10□□□□□ -0.81
HDAC3-216ENST00000523088 SLC26A8Q96RN1 970 aa10□□□□□ -0.81
HDAC3-216ENST00000523088 CENPJQ9HC77 1338 aaPredicted RBP10□□□□□ -0.81
HDAC3-216ENST00000523088 CLTCL1P53675 1640 aa10□□□□□ -0.81
HDAC3-216ENST00000523088 MMP14P50281 582 aa9.99□□□□□ -0.81
HDAC3-216ENST00000523088 AXDND1Q5T1B0 1012 aaPredicted RBP9.99□□□□□ -0.81
HDAC3-216ENST00000523088 PROSER2Q86WR7 435 aaPredicted RBP9.99□□□□□ -0.81
HDAC3-216ENST00000523088 WWC1Q8IX03 1113 aa9.99□□□□□ -0.81
HDAC3-216ENST00000523088 PRDM10Q9NQV6 1147 aa9.99□□□□□ -0.81
HDAC3-216ENST00000523088 ROBO1Q9Y6N7 1651 aa9.99□□□□□ -0.81
HDAC3-216ENST00000523088 ADAMTS13Q76LX8 1427 aa9.99□□□□□ -0.81
HDAC3-216ENST00000523088 TMED8Q6PL24 325 aaPredicted RBP9.98□□□□□ -0.81
HDAC3-216ENST00000523088 XRN1Q8IZH2 1706 aaKnown RBP9.98□□□□□ -0.81
HDAC3-216ENST00000523088 DCCP43146 1447 aa9.98□□□□□ -0.81
HDAC3-216ENST00000523088 NRXN3Q9Y4C0 1643 aa9.97□□□□□ -0.81
HDAC3-216ENST00000523088 ANAPC15P60006 121 aa9.97□□□□□ -0.81
HDAC3-216ENST00000523088 STAC3Q96MF2 364 aa9.97□□□□□ -0.81
HDAC3-216ENST00000523088 PRDM16Q9HAZ2 1276 aa9.97□□□□□ -0.81
HDAC3-216ENST00000523088 NEXMIFQ5QGS0 1516 aa9.97□□□□□ -0.81
HDAC3-216ENST00000523088 FAM193AP78312 1265 aa9.96□□□□□ -0.82
HDAC3-216ENST00000523088 RPGRIP1LQ68CZ1 1315 aa9.96□□□□□ -0.82
HDAC3-216ENST00000523088 PPLO60437 1756 aa9.96□□□□□ -0.82
HDAC3-216ENST00000523088 CADPS2Q86UW7 1296 aa9.95□□□□□ -0.82
HDAC3-216ENST00000523088 CCER1Q8TC90 406 aaPredicted RBP9.95□□□□□ -0.82
HDAC3-216ENST00000523088 TRIM52Q96A61 297 aa9.95□□□□□ -0.82
HDAC3-216ENST00000523088 ZNF692Q9BU19 519 aaPredicted RBP9.95□□□□□ -0.82
HDAC3-216ENST00000523088 PHLPP1O60346 1717 aa9.95□□□□□ -0.82
HDAC3-216ENST00000523088 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.95□□□□□ -0.82
HDAC3-216ENST00000523088 SOCS7O14512 581 aa9.94□□□□□ -0.82
HDAC3-216ENST00000523088 PPM1GO15355 546 aaPredicted RBP9.94□□□□□ -0.82
HDAC3-216ENST00000523088 GPATCH11Q8N954 259 aa9.94□□□□□ -0.82
HDAC3-216ENST00000523088 CWC22Q9HCG8 908 aaKnown RBP9.94□□□□□ -0.82
HDAC3-216ENST00000523088 CCDC144AA2RUR9 1427 aa9.93□□□□□ -0.82
HDAC3-216ENST00000523088 PRAG1Q86YV5 1406 aa9.93□□□□□ -0.82
HDAC3-216ENST00000523088 ATF3P18847 181 aa9.93□□□□□ -0.82
HDAC3-216ENST00000523088 C19orf44Q9H6X5 657 aa9.93□□□□□ -0.82
HDAC3-216ENST00000523088 PTCH1Q13635 1447 aa9.92□□□□□ -0.82
HDAC3-216ENST00000523088 SLAIN2Q9P270 581 aa9.92□□□□□ -0.82
HDAC3-216ENST00000523088 SETD1AO15047 1707 aaKnown RBP9.92□□□□□ -0.82
HDAC3-216ENST00000523088 AHDC1Q5TGY3 1603 aaPredicted RBP9.92□□□□□ -0.82
HDAC3-216ENST00000523088 TRIM44Q96DX7 344 aaPredicted RBP9.91□□□□□ -0.82
HDAC3-216ENST00000523088 KCNG1Q9UIX4 513 aa9.91□□□□□ -0.82
HDAC3-216ENST00000523088 PRDM4Q9UKN5 801 aa9.91□□□□□ -0.82
HDAC3-216ENST00000523088 AMOTL2Q9Y2J4 779 aa9.91□□□□□ -0.82
HDAC3-216ENST00000523088 IFT172Q9UG01 1749 aa9.9□□□□□ -0.82
HDAC3-216ENST00000523088 JCADQ9P266 1359 aa9.9□□□□□ -0.82
HDAC3-216ENST00000523088 NECTIN2Q92692 538 aa9.9□□□□□ -0.82
HDAC3-216ENST00000523088 ADGRL3Q9HAR2 1447 aa9.9□□□□□ -0.83
HDAC3-216ENST00000523088 SHPRHQ149N8 1683 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms