RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CERKQ8TCT0 537 aa21.12■□□□□ 0.97
NUP54-213ENST00000513352 MSH6P52701 1360 aa21.11■□□□□ 0.97
NUP54-213ENST00000513352 MINK1Q8N4C8 1332 aaPredicted RBP21.11■□□□□ 0.97
NUP54-213ENST00000513352 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.1■□□□□ 0.97
NUP54-213ENST00000513352 ADGRL3Q9HAR2 1447 aa21.1■□□□□ 0.97
NUP54-213ENST00000513352 NCOA3Q9Y6Q9 1424 aa21.1■□□□□ 0.97
NUP54-213ENST00000513352 HIRIP3Q9BW71 556 aaPredicted RBP21.09■□□□□ 0.97
NUP54-213ENST00000513352 ATF3P18847 181 aa21.06■□□□□ 0.96
NUP54-213ENST00000513352 EIF4G2P78344 907 aaKnown RBP eCLIP21.06■□□□□ 0.96
NUP54-213ENST00000513352 C19orf44Q9H6X5 657 aa21.06■□□□□ 0.96
NUP54-213ENST00000513352 ST20-MTHFSA0A0A6YYL1 179 aa21.05■□□□□ 0.96
NUP54-213ENST00000513352 IQSEC2Q5JU85 1478 aa21.05■□□□□ 0.96
NUP54-213ENST00000513352 CDC42BPGQ6DT37 1551 aa21.03■□□□□ 0.96
NUP54-213ENST00000513352 HSPA5P11021 654 aaKnown RBP21.03■□□□□ 0.96
NUP54-213ENST00000513352 ADGRB2O60241 1585 aa21.02■□□□□ 0.96
NUP54-213ENST00000513352 DCCP43146 1447 aa21.02■□□□□ 0.96
NUP54-213ENST00000513352 CADPS2Q86UW7 1296 aa21.01■□□□□ 0.95
NUP54-213ENST00000513352 NUTM2FA1L443 756 aa21■□□□□ 0.95
NUP54-213ENST00000513352 UBAP1LF5GYI3 381 aa21■□□□□ 0.95
NUP54-213ENST00000513352 FMN2Q9NZ56 1722 aa20.99■□□□□ 0.95
NUP54-213ENST00000513352 EVC2Q86UK5 1308 aa20.98■□□□□ 0.95
NUP54-213ENST00000513352 SCAF1Q9H7N4 1312 aaKnown RBP20.98■□□□□ 0.95
NUP54-213ENST00000513352 WASLO00401 505 aaPredicted RBP20.97■□□□□ 0.95
NUP54-213ENST00000513352 TOM1O60784 492 aa20.97■□□□□ 0.95
NUP54-213ENST00000513352 SRPK2P78362 688 aaKnown RBP20.97■□□□□ 0.95
NUP54-213ENST00000513352 TULP4Q9NRJ4 1543 aa20.97■□□□□ 0.95
NUP54-213ENST00000513352 SBNO2Q9Y2G9 1366 aa20.97■□□□□ 0.95
NUP54-213ENST00000513352 CDK19Q9BWU1 502 aa20.96■□□□□ 0.95
NUP54-213ENST00000513352 TESK2Q96S53 571 aa20.95■□□□□ 0.94
NUP54-213ENST00000513352 PIP4K2BP78356 416 aa20.94■□□□□ 0.94
NUP54-213ENST00000513352 TMF1P82094 1093 aa20.94■□□□□ 0.94
NUP54-213ENST00000513352 MST1RQ04912 1400 aa20.94■□□□□ 0.94
NUP54-213ENST00000513352 RGPD8O14715 1765 aaPredicted RBP20.93■□□□□ 0.94
NUP54-213ENST00000513352 CABP2Q9NPB3 220 aa20.93■□□□□ 0.94
NUP54-213ENST00000513352 SLAIN2Q9P270 581 aa20.93■□□□□ 0.94
NUP54-213ENST00000513352 SLC24A1O60721 1099 aa20.92■□□□□ 0.94
NUP54-213ENST00000513352 C1orf167Q5SNV9 1468 aa20.91■□□□□ 0.94
NUP54-213ENST00000513352 ANKARQ7Z5J8 1434 aa20.9■□□□□ 0.94
NUP54-213ENST00000513352 DISP3Q9P2K9 1392 aa20.9■□□□□ 0.94
NUP54-213ENST00000513352 POLR3GLQ9BT43 218 aa20.9■□□□□ 0.94
NUP54-213ENST00000513352 USP32Q8NFA0 1604 aa20.89■□□□□ 0.94
NUP54-213ENST00000513352 ESCO1Q5FWF5 840 aa20.89■□□□□ 0.93
NUP54-213ENST00000513352 ITSN1Q15811 1721 aa20.89■□□□□ 0.93
NUP54-213ENST00000513352 PRR36Q9H6K5 1346 aa20.88■□□□□ 0.93
NUP54-213ENST00000513352 NUDT16Q96DE0 195 aaKnown RBP20.88■□□□□ 0.93
NUP54-213ENST00000513352 ATP7BP35670 1465 aa20.88■□□□□ 0.93
NUP54-213ENST00000513352 ROBO1Q9Y6N7 1651 aa20.87■□□□□ 0.93
NUP54-213ENST00000513352 CDCA8Q53HL2 280 aa20.86■□□□□ 0.93
NUP54-213ENST00000513352 ORAI2Q96SN7 254 aa20.86■□□□□ 0.93
NUP54-213ENST00000513352 ATAD2Q6PL18 1390 aa20.85■□□□□ 0.93
NUP54-213ENST00000513352 TOPAZ1Q8N9V7 1692 aa20.84■□□□□ 0.93
NUP54-213ENST00000513352 BRINP3Q76B58 766 aa20.84■□□□□ 0.93
NUP54-213ENST00000513352 KIF1AQ12756 1690 aa20.83■□□□□ 0.93
NUP54-213ENST00000513352 PMFBP1Q8TBY8 1022 aa20.83■□□□□ 0.93
NUP54-213ENST00000513352 TMC1Q8TDI8 760 aa20.83■□□□□ 0.93
NUP54-213ENST00000513352 PHF8Q9UPP1 1060 aa20.83■□□□□ 0.93
NUP54-213ENST00000513352 CCDC61Q9Y6R9 512 aa20.83■□□□□ 0.93
NUP54-213ENST00000513352 PPIP5K1Q6PFW1 1433 aa20.83■□□□□ 0.93
NUP54-213ENST00000513352 NGDNQ8NEJ9 315 aaKnown RBP20.8■□□□□ 0.92
NUP54-213ENST00000513352 CABP1Q9NZU7 370 aa20.79■□□□□ 0.92
NUP54-213ENST00000513352 C11orf95C9JLR9 678 aaPredicted RBP20.78■□□□□ 0.92
NUP54-213ENST00000513352 FBXO41Q8TF61 875 aa20.78■□□□□ 0.92
NUP54-213ENST00000513352 DDX17Q92841 729 aaKnown RBP20.78■□□□□ 0.92
NUP54-213ENST00000513352 PUS7Q96PZ0 661 aaKnown RBP20.78■□□□□ 0.92
NUP54-213ENST00000513352 FOXO3O43524 673 aa20.77■□□□□ 0.92
NUP54-213ENST00000513352 PHLPP1O60346 1717 aa20.76■□□□□ 0.91
NUP54-213ENST00000513352 XPCQ01831 940 aaPredicted RBP20.76■□□□□ 0.91
NUP54-213ENST00000513352 KIF7Q2M1P5 1343 aa20.76■□□□□ 0.91
NUP54-213ENST00000513352 NPHP3Q7Z494 1330 aa20.76■□□□□ 0.91
NUP54-213ENST00000513352 NHSL1Q5SYE7 1610 aa20.75■□□□□ 0.91
NUP54-213ENST00000513352 SLC12A5Q9H2X9 1139 aa20.75■□□□□ 0.91
NUP54-213ENST00000513352 ACEP12821 1306 aa20.75■□□□□ 0.91
NUP54-213ENST00000513352 MYOM1P52179 1685 aa20.74■□□□□ 0.91
NUP54-213ENST00000513352 PLEKHG3A1L390 1219 aa20.74■□□□□ 0.91
NUP54-213ENST00000513352 PSME1Q06323 249 aa20.74■□□□□ 0.91
NUP54-213ENST00000513352 AHDC1Q5TGY3 1603 aaPredicted RBP20.74■□□□□ 0.91
NUP54-213ENST00000513352 CCDC7Q96M83 1385 aa20.73■□□□□ 0.91
NUP54-213ENST00000513352 NINLQ9Y2I6 1382 aa20.73■□□□□ 0.91
NUP54-213ENST00000513352 HDGFL2Q7Z4V5 671 aaPredicted RBP20.72■□□□□ 0.91
NUP54-213ENST00000513352 AKAP12Q02952 1782 aa20.72■□□□□ 0.91
NUP54-213ENST00000513352 KRT28Q7Z3Y7 464 aa20.71■□□□□ 0.91
NUP54-213ENST00000513352 TERF2IPQ9NYB0 399 aa20.71■□□□□ 0.91
NUP54-213ENST00000513352 WASHC2AQ641Q2 1341 aa20.71■□□□□ 0.91
NUP54-213ENST00000513352 POLR3AO14802 1390 aaPredicted RBP20.71■□□□□ 0.91
NUP54-213ENST00000513352 PAK3O75914 559 aaPredicted RBP20.69■□□□□ 0.9
NUP54-213ENST00000513352 KTN1Q86UP2 1357 aaKnown RBP20.69■□□□□ 0.9
NUP54-213ENST00000513352 HSPA1LP34931 641 aa20.68■□□□□ 0.9
NUP54-213ENST00000513352 A0A1W2PP64 1363 aa20.68■□□□□ 0.9
NUP54-213ENST00000513352 PXDNQ92626 1479 aa20.68■□□□□ 0.9
NUP54-213ENST00000513352 LMOD2Q6P5Q4 547 aa20.67■□□□□ 0.9
NUP54-213ENST00000513352 ZNF692Q9BU19 519 aaPredicted RBP20.67■□□□□ 0.9
NUP54-213ENST00000513352 ANKRD36BQ8N2N9 1353 aa20.67■□□□□ 0.9
NUP54-213ENST00000513352 COL16A1Q07092 1604 aaPredicted RBP20.67■□□□□ 0.9
NUP54-213ENST00000513352 MON2Q7Z3U7 1717 aa20.67■□□□□ 0.9
NUP54-213ENST00000513352 USP6P35125 1406 aa20.66■□□□□ 0.9
NUP54-213ENST00000513352 CD163L1Q9NR16 1453 aa20.66■□□□□ 0.9
NUP54-213ENST00000513352 CPSF1Q10570 1443 aaKnown RBP20.65■□□□□ 0.9
NUP54-213ENST00000513352 SOS2Q07890 1332 aaPredicted RBP20.65■□□□□ 0.9
NUP54-213ENST00000513352 ZNF316A6NFI3 1004 aaPredicted RBP20.65■□□□□ 0.9
NUP54-213ENST00000513352 TRPM3Q9HCF6 1732 aaPredicted RBP20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms