RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	SETD1A	O15047	1707 aa	Known RBP	10.59	□□□□□ -0.71
NR1I3-231	ENST00000512340	KIAA1210	Q9ULL0	1709 aa		10.59	□□□□□ -0.71
NR1I3-231	ENST00000512340	SLC24A1	O60721	1099 aa		10.59	□□□□□ -0.71
NR1I3-231	ENST00000512340	PRAM1	Q96QH2	718 aa		10.59	□□□□□ -0.71
NR1I3-231	ENST00000512340	ROCK2	O75116	1388 aa	Known RBP	10.59	□□□□□ -0.71
NR1I3-231	ENST00000512340	WAPL	Q7Z5K2	1190 aa		10.58	□□□□□ -0.72
NR1I3-231	ENST00000512340	XIRP1	Q702N8	1843 aa	Known RBP	10.58	□□□□□ -0.72
NR1I3-231	ENST00000512340	KNDC1	Q76NI1	1749 aa		10.58	□□□□□ -0.72
NR1I3-231	ENST00000512340	DLC1	Q96QB1	1528 aa		10.58	□□□□□ -0.72
NR1I3-231	ENST00000512340	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	10.56	□□□□□ -0.72
NR1I3-231	ENST00000512340	JCAD	Q9P266	1359 aa		10.56	□□□□□ -0.72
NR1I3-231	ENST00000512340	SAFB2	Q14151	953 aa	Known RBP eCLIP	10.56	□□□□□ -0.72
NR1I3-231	ENST00000512340	CARD11	Q9BXL7	1154 aa		10.56	□□□□□ -0.72
NR1I3-231	ENST00000512340	ROBO1	Q9Y6N7	1651 aa		10.56	□□□□□ -0.72
NR1I3-231	ENST00000512340	ADGRB1	O14514	1584 aa		10.55	□□□□□ -0.72
NR1I3-231	ENST00000512340	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.55	□□□□□ -0.72
NR1I3-231	ENST00000512340	NBPF1	Q3BBV0	1214 aa		10.54	□□□□□ -0.72
NR1I3-231	ENST00000512340	ESCO1	Q5FWF5	840 aa		10.54	□□□□□ -0.72
NR1I3-231	ENST00000512340	POTEA	Q6S8J7	498 aa		10.54	□□□□□ -0.72
NR1I3-231	ENST00000512340	SPATA31A6	Q5VVP1	1343 aa		10.54	□□□□□ -0.72
NR1I3-231	ENST00000512340	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.54	□□□□□ -0.72
NR1I3-231	ENST00000512340	ASXL1	Q8IXJ9	1541 aa		10.53	□□□□□ -0.72
NR1I3-231	ENST00000512340	CDC42BPG	Q6DT37	1551 aa		10.53	□□□□□ -0.72
NR1I3-231	ENST00000512340	ZNF772	Q68DY9	489 aa	Predicted RBP	10.53	□□□□□ -0.72
NR1I3-231	ENST00000512340	MST1R	Q04912	1400 aa		10.52	□□□□□ -0.73
NR1I3-231	ENST00000512340	PSME1	Q06323	249 aa		10.52	□□□□□ -0.73
NR1I3-231	ENST00000512340	BRINP3	Q76B58	766 aa		10.52	□□□□□ -0.73
NR1I3-231	ENST00000512340	C1orf167	Q5SNV9	1468 aa		10.52	□□□□□ -0.73
NR1I3-231	ENST00000512340	NPHP3	Q7Z494	1330 aa		10.52	□□□□□ -0.73
NR1I3-231	ENST00000512340	EVC2	Q86UK5	1308 aa		10.52	□□□□□ -0.73
NR1I3-231	ENST00000512340	PHLPP1	O60346	1717 aa		10.51	□□□□□ -0.73
NR1I3-231	ENST00000512340	NALCN	Q8IZF0	1738 aa		10.51	□□□□□ -0.73
NR1I3-231	ENST00000512340	WASL	O00401	505 aa	Predicted RBP	10.51	□□□□□ -0.73
NR1I3-231	ENST00000512340	LRRC59	Q96AG4	307 aa	Known RBP	10.51	□□□□□ -0.73
NR1I3-231	ENST00000512340	GPRASP1	Q5JY77	1395 aa		10.51	□□□□□ -0.73
NR1I3-231	ENST00000512340	PLEKHH1	Q9ULM0	1364 aa		10.51	□□□□□ -0.73
NR1I3-231	ENST00000512340	ANKAR	Q7Z5J8	1434 aa		10.5	□□□□□ -0.73
NR1I3-231	ENST00000512340	RALGAPB	Q86X10	1494 aa		10.5	□□□□□ -0.73
NR1I3-231	ENST00000512340	SRPK2	P78362	688 aa	Known RBP	10.5	□□□□□ -0.73
NR1I3-231	ENST00000512340	NBPF8	Q3BBV2	869 aa		10.5	□□□□□ -0.73
NR1I3-231	ENST00000512340	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.5	□□□□□ -0.73
NR1I3-231	ENST00000512340	TRPM1	Q7Z4N2	1603 aa		10.5	□□□□□ -0.73
NR1I3-231	ENST00000512340	NUTM2F	A1L443	756 aa		10.49	□□□□□ -0.73
NR1I3-231	ENST00000512340	PHF8	Q9UPP1	1060 aa		10.49	□□□□□ -0.73
NR1I3-231	ENST00000512340	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.49	□□□□□ -0.73
NR1I3-231	ENST00000512340	CDCA8	Q53HL2	280 aa		10.48	□□□□□ -0.73
NR1I3-231	ENST00000512340	NGDN	Q8NEJ9	315 aa	Known RBP	10.48	□□□□□ -0.73
NR1I3-231	ENST00000512340	ORAI2	Q96SN7	254 aa		10.48	□□□□□ -0.73
NR1I3-231	ENST00000512340	CDK19	Q9BWU1	502 aa		10.48	□□□□□ -0.73
NR1I3-231	ENST00000512340	ADGRB2	O60241	1585 aa		10.48	□□□□□ -0.73
NR1I3-231	ENST00000512340	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.47	□□□□□ -0.73
NR1I3-231	ENST00000512340	MEX3C	Q5U5Q3	659 aa	Known RBP	10.47	□□□□□ -0.73
NR1I3-231	ENST00000512340	NUDT16	Q96DE0	195 aa	Known RBP	10.47	□□□□□ -0.73
NR1I3-231	ENST00000512340	CCDC61	Q9Y6R9	512 aa		10.47	□□□□□ -0.73
NR1I3-231	ENST00000512340	COL16A1	Q07092	1604 aa	Predicted RBP	10.47	□□□□□ -0.73
NR1I3-231	ENST00000512340	FOXO3	O43524	673 aa		10.46	□□□□□ -0.73
NR1I3-231	ENST00000512340	AHDC1	Q5TGY3	1603 aa	Predicted RBP	10.46	□□□□□ -0.74
NR1I3-231	ENST00000512340	FMN2	Q9NZ56	1722 aa		10.46	□□□□□ -0.74
NR1I3-231	ENST00000512340	KIF1A	Q12756	1690 aa		10.45	□□□□□ -0.74
NR1I3-231	ENST00000512340	SHPRH	Q149N8	1683 aa		10.45	□□□□□ -0.74
NR1I3-231	ENST00000512340	TULP4	Q9NRJ4	1543 aa		10.45	□□□□□ -0.74
NR1I3-231	ENST00000512340	SBNO2	Q9Y2G9	1366 aa		10.45	□□□□□ -0.74
NR1I3-231	ENST00000512340	UPF1	Q92900	1129 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
NR1I3-231	ENST00000512340	ATAD2	Q6PL18	1390 aa		10.44	□□□□□ -0.74
NR1I3-231	ENST00000512340	HAP1	P54257	671 aa	Predicted RBP	10.44	□□□□□ -0.74
NR1I3-231	ENST00000512340	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.44	□□□□□ -0.74
NR1I3-231	ENST00000512340	TMF1	P82094	1093 aa		10.44	□□□□□ -0.74
NR1I3-231	ENST00000512340	KRT28	Q7Z3Y7	464 aa		10.44	□□□□□ -0.74
NR1I3-231	ENST00000512340	PUS7	Q96PZ0	661 aa	Known RBP	10.44	□□□□□ -0.74
NR1I3-231	ENST00000512340	SOS2	Q07890	1332 aa	Predicted RBP	10.43	□□□□□ -0.74
NR1I3-231	ENST00000512340	RXRB	P28702	533 aa		10.43	□□□□□ -0.74
NR1I3-231	ENST00000512340	PMFBP1	Q8TBY8	1022 aa		10.43	□□□□□ -0.74
NR1I3-231	ENST00000512340	QRICH2	Q9H0J4	1663 aa		10.43	□□□□□ -0.74
NR1I3-231	ENST00000512340	ARHGEF10	O15013	1369 aa		10.42	□□□□□ -0.74
NR1I3-231	ENST00000512340	USP47	Q96K76	1375 aa		10.42	□□□□□ -0.74
NR1I3-231	ENST00000512340	ITSN1	Q15811	1721 aa		10.42	□□□□□ -0.74
NR1I3-231	ENST00000512340	ST20-MTHFS	A0A0A6YYL1	179 aa		10.42	□□□□□ -0.74
NR1I3-231	ENST00000512340	PLEKHG3	A1L390	1219 aa		10.42	□□□□□ -0.74
NR1I3-231	ENST00000512340	LMOD2	Q6P5Q4	547 aa		10.42	□□□□□ -0.74
NR1I3-231	ENST00000512340	ZNF692	Q9BU19	519 aa	Predicted RBP	10.42	□□□□□ -0.74
NR1I3-231	ENST00000512340	BRD4	O60885	1362 aa	Predicted RBP	10.41	□□□□□ -0.74
NR1I3-231	ENST00000512340	PAK3	O75914	559 aa	Predicted RBP	10.41	□□□□□ -0.74
NR1I3-231	ENST00000512340	CABP2	Q9NPB3	220 aa		10.41	□□□□□ -0.74
NR1I3-231	ENST00000512340	SBNO1	A3KN83	1393 aa		10.4	□□□□□ -0.74
NR1I3-231	ENST00000512340	LRP6	O75581	1613 aa		10.4	□□□□□ -0.74
NR1I3-231	ENST00000512340	NHSL1	Q5SYE7	1610 aa		10.4	□□□□□ -0.74
NR1I3-231	ENST00000512340	NINL	Q9Y2I6	1382 aa		10.4	□□□□□ -0.74
NR1I3-231	ENST00000512340	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.4	□□□□□ -0.74
NR1I3-231	ENST00000512340	NUTM2E	B1AL46	878 aa	Predicted RBP	10.4	□□□□□ -0.74
NR1I3-231	ENST00000512340	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.4	□□□□□ -0.74
NR1I3-231	ENST00000512340	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.4	□□□□□ -0.74
NR1I3-231	ENST00000512340	TMC1	Q8TDI8	760 aa		10.4	□□□□□ -0.74
NR1I3-231	ENST00000512340	TERF2IP	Q9NYB0	399 aa		10.4	□□□□□ -0.74
NR1I3-231	ENST00000512340	PPIP5K1	Q6PFW1	1433 aa		10.4	□□□□□ -0.75
NR1I3-231	ENST00000512340	XPC	Q01831	940 aa	Predicted RBP	10.39	□□□□□ -0.75
NR1I3-231	ENST00000512340	DDX17	Q92841	729 aa	Known RBP	10.39	□□□□□ -0.75
NR1I3-231	ENST00000512340	ACE	P12821	1306 aa		10.38	□□□□□ -0.75
NR1I3-231	ENST00000512340	SPATA31A3	Q5VYP0	1347 aa		10.38	□□□□□ -0.75
NR1I3-231	ENST00000512340	PRR36	Q9H6K5	1346 aa		10.38	□□□□□ -0.75
NR1I3-231	ENST00000512340	ATP7B	P35670	1465 aa		10.38	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms