RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 KNDC1Q76NI1 1749 aa21.21■□□□□ 0.99
HMGCS1-203ENST00000507004 SOS2Q07890 1332 aaPredicted RBP21.2■□□□□ 0.98
HMGCS1-203ENST00000507004 DHX57Q6P158 1386 aaKnown RBP21.2■□□□□ 0.98
HMGCS1-203ENST00000507004 NRXN1Q9ULB1 1477 aa21.2■□□□□ 0.98
HMGCS1-203ENST00000507004 STK26Q9P289 416 aa21.19■□□□□ 0.98
HMGCS1-203ENST00000507004 NPHP3Q7Z494 1330 aa21.19■□□□□ 0.98
HMGCS1-203ENST00000507004 PNPLA6Q8IY17 1366 aa21.19■□□□□ 0.98
HMGCS1-203ENST00000507004 YTHDC2Q9H6S0 1430 aaKnown RBP21.19■□□□□ 0.98
HMGCS1-203ENST00000507004 NUTM2BA6NNL0 878 aaPredicted RBP21.17■□□□□ 0.98
HMGCS1-203ENST00000507004 NUTM2EB1AL46 878 aaPredicted RBP21.17■□□□□ 0.98
HMGCS1-203ENST00000507004 NUTM2AQ8IVF1 878 aaPredicted RBP21.17■□□□□ 0.98
HMGCS1-203ENST00000507004 ORAI2Q96SN7 254 aa21.17■□□□□ 0.98
HMGCS1-203ENST00000507004 TMEM132EQ6IEE7 984 aa21.16■□□□□ 0.98
HMGCS1-203ENST00000507004 ESCO1Q5FWF5 840 aa21.15■□□□□ 0.98
HMGCS1-203ENST00000507004 WAPLQ7Z5K2 1190 aa21.14■□□□□ 0.97
HMGCS1-203ENST00000507004 DDX17Q92841 729 aaKnown RBP21.13■□□□□ 0.97
HMGCS1-203ENST00000507004 CFAP70Q5T0N1 1121 aa21.12■□□□□ 0.97
HMGCS1-203ENST00000507004 RXRBP28702 533 aa21.11■□□□□ 0.97
HMGCS1-203ENST00000507004 AFF2P51816 1311 aa21.1■□□□□ 0.97
HMGCS1-203ENST00000507004 CDK12Q9NYV4 1490 aaPredicted RBP21.1■□□□□ 0.97
HMGCS1-203ENST00000507004 DLC1Q96QB1 1528 aa21.09■□□□□ 0.97
HMGCS1-203ENST00000507004 PLEKHH1Q9ULM0 1364 aa21.08■□□□□ 0.96
HMGCS1-203ENST00000507004 C8orf37Q96NL8 207 aa21.07■□□□□ 0.96
HMGCS1-203ENST00000507004 KIF1AQ12756 1690 aa21.06■□□□□ 0.96
HMGCS1-203ENST00000507004 FOXO3O43524 673 aa21.06■□□□□ 0.96
HMGCS1-203ENST00000507004 NGLY1Q96IV0 654 aa21.06■□□□□ 0.96
HMGCS1-203ENST00000507004 POGKQ9P215 609 aa21.06■□□□□ 0.96
HMGCS1-203ENST00000507004 FMN2Q9NZ56 1722 aa21.06■□□□□ 0.96
HMGCS1-203ENST00000507004 COL22A1Q8NFW1 1626 aaPredicted RBP21.05■□□□□ 0.96
HMGCS1-203ENST00000507004 DCAF11Q8TEB1 546 aa21.05■□□□□ 0.96
HMGCS1-203ENST00000507004 RBM6P78332 1123 aaKnown RBP21.04■□□□□ 0.96
HMGCS1-203ENST00000507004 PRAM1Q96QH2 718 aa21.04■□□□□ 0.96
HMGCS1-203ENST00000507004 EIF3AQ14152 1382 aaKnown RBP21.04■□□□□ 0.96
HMGCS1-203ENST00000507004 PXDNQ92626 1479 aa21.04■□□□□ 0.96
HMGCS1-203ENST00000507004 ADAMTS2O95450 1211 aa21.03■□□□□ 0.96
HMGCS1-203ENST00000507004 PSME1Q06323 249 aa21.02■□□□□ 0.96
HMGCS1-203ENST00000507004 QTRT2Q9H974 415 aaKnown RBP21.02■□□□□ 0.96
HMGCS1-203ENST00000507004 ANKARQ7Z5J8 1434 aa21.02■□□□□ 0.96
HMGCS1-203ENST00000507004 NUTM2FA1L443 756 aa21.01■□□□□ 0.95
HMGCS1-203ENST00000507004 KDM2AQ9Y2K7 1162 aa21.01■□□□□ 0.95
HMGCS1-203ENST00000507004 ADGRB1O14514 1584 aa21.01■□□□□ 0.95
HMGCS1-203ENST00000507004 FNBP4Q8N3X1 1017 aaPredicted RBP21■□□□□ 0.95
HMGCS1-203ENST00000507004 PHF8Q9UPP1 1060 aa21■□□□□ 0.95
HMGCS1-203ENST00000507004 TRPC5Q9UL62 973 aaPredicted RBP20.99■□□□□ 0.95
HMGCS1-203ENST00000507004 SPATA31A3Q5VYP0 1347 aa20.99■□□□□ 0.95
HMGCS1-203ENST00000507004 ADGRB2O60241 1585 aa20.98■□□□□ 0.95
HMGCS1-203ENST00000507004 KRT28Q7Z3Y7 464 aa20.98■□□□□ 0.95
HMGCS1-203ENST00000507004 USP21Q9UK80 565 aa20.98■□□□□ 0.95
HMGCS1-203ENST00000507004 TRAK1Q9UPV9 953 aa20.97■□□□□ 0.95
HMGCS1-203ENST00000507004 SBNO1A3KN83 1393 aa20.96■□□□□ 0.95
HMGCS1-203ENST00000507004 XPCQ01831 940 aaPredicted RBP20.95■□□□□ 0.94
HMGCS1-203ENST00000507004 SAFB2Q14151 953 aaKnown RBP eCLIP20.95■□□□□ 0.94
HMGCS1-203ENST00000507004 ARHGEF10O15013 1369 aa20.93■□□□□ 0.94
HMGCS1-203ENST00000507004 TNS3Q68CZ2 1445 aa20.93■□□□□ 0.94
HMGCS1-203ENST00000507004 UPF1Q92900 1129 aaKnown RBP eCLIP20.91■□□□□ 0.94
HMGCS1-203ENST00000507004 ATRNO75882 1429 aa20.9■□□□□ 0.94
HMGCS1-203ENST00000507004 GPRASP1Q5JY77 1395 aa20.9■□□□□ 0.94
HMGCS1-203ENST00000507004 WASLO00401 505 aaPredicted RBP20.9■□□□□ 0.94
HMGCS1-203ENST00000507004 RGS12O14924 1447 aa20.89■□□□□ 0.94
HMGCS1-203ENST00000507004 HAP1P54257 671 aaPredicted RBP20.89■□□□□ 0.93
HMGCS1-203ENST00000507004 KIAA1210Q9ULL0 1709 aa20.89■□□□□ 0.93
HMGCS1-203ENST00000507004 MARF1Q9Y4F3 1742 aaKnown RBP20.89■□□□□ 0.93
HMGCS1-203ENST00000507004 TULP4Q9NRJ4 1543 aa20.88■□□□□ 0.93
HMGCS1-203ENST00000507004 MINK1Q8N4C8 1332 aaPredicted RBP20.88■□□□□ 0.93
HMGCS1-203ENST00000507004 RGPD8O14715 1765 aaPredicted RBP20.87■□□□□ 0.93
HMGCS1-203ENST00000507004 HIRIP3Q9BW71 556 aaPredicted RBP20.86■□□□□ 0.93
HMGCS1-203ENST00000507004 UNC5CLQ8IV45 518 aa20.85■□□□□ 0.93
HMGCS1-203ENST00000507004 PMFBP1Q8TBY8 1022 aa20.85■□□□□ 0.93
HMGCS1-203ENST00000507004 BCL9LQ86UU0 1499 aa20.85■□□□□ 0.93
HMGCS1-203ENST00000507004 ATAD2Q6PL18 1390 aa20.85■□□□□ 0.93
HMGCS1-203ENST00000507004 USP32Q8NFA0 1604 aa20.84■□□□□ 0.93
HMGCS1-203ENST00000507004 SLIT2O94813 1529 aa20.83■□□□□ 0.93
HMGCS1-203ENST00000507004 LMOD2Q6P5Q4 547 aa20.83■□□□□ 0.93
HMGCS1-203ENST00000507004 GJD4Q96KN9 370 aaPredicted RBP20.83■□□□□ 0.93
HMGCS1-203ENST00000507004 ARHGEF28Q8N1W1 1705 aaKnown RBP20.83■□□□□ 0.92
HMGCS1-203ENST00000507004 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.83■□□□□ 0.92
HMGCS1-203ENST00000507004 NGDNQ8NEJ9 315 aaKnown RBP20.82■□□□□ 0.92
HMGCS1-203ENST00000507004 PRR36Q9H6K5 1346 aa20.8■□□□□ 0.92
HMGCS1-203ENST00000507004 ITSN1Q15811 1721 aa20.79■□□□□ 0.92
HMGCS1-203ENST00000507004 NUDT16Q96DE0 195 aaKnown RBP20.79■□□□□ 0.92
HMGCS1-203ENST00000507004 CCDC125Q86Z20 511 aa20.77■□□□□ 0.92
HMGCS1-203ENST00000507004 CCDC61Q9Y6R9 512 aa20.77■□□□□ 0.92
HMGCS1-203ENST00000507004 ATP7BP35670 1465 aa20.76■□□□□ 0.91
HMGCS1-203ENST00000507004 NWD2Q9ULI1 1742 aa20.76■□□□□ 0.91
HMGCS1-203ENST00000507004 VPS72Q15906 364 aa20.76■□□□□ 0.91
HMGCS1-203ENST00000507004 CDK19Q9BWU1 502 aa20.76■□□□□ 0.91
HMGCS1-203ENST00000507004 TRPM3Q9HCF6 1732 aaPredicted RBP20.75■□□□□ 0.91
HMGCS1-203ENST00000507004 CABLES1Q8TDN4 633 aa20.75■□□□□ 0.91
HMGCS1-203ENST00000507004 CENPJQ9HC77 1338 aaPredicted RBP20.74■□□□□ 0.91
HMGCS1-203ENST00000507004 NBPF1Q3BBV0 1214 aa20.73■□□□□ 0.91
HMGCS1-203ENST00000507004 RALGAPBQ86X10 1494 aa20.73■□□□□ 0.91
HMGCS1-203ENST00000507004 ALS2Q96Q42 1657 aa20.73■□□□□ 0.91
HMGCS1-203ENST00000507004 PLEKHG3A1L390 1219 aa20.72■□□□□ 0.91
HMGCS1-203ENST00000507004 PAK3O75914 559 aaPredicted RBP20.72■□□□□ 0.91
HMGCS1-203ENST00000507004 L3MBTL2Q969R5 705 aa20.72■□□□□ 0.91
HMGCS1-203ENST00000507004 ABCA3Q99758 1704 aa20.72■□□□□ 0.91
HMGCS1-203ENST00000507004 POLR3AO14802 1390 aaPredicted RBP20.72■□□□□ 0.91
HMGCS1-203ENST00000507004 BRD4O60885 1362 aaPredicted RBP20.71■□□□□ 0.91
HMGCS1-203ENST00000507004 FAM83GA6ND36 823 aa20.69■□□□□ 0.9
HMGCS1-203ENST00000507004 ONECUT3O60422 494 aaPredicted RBP20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms