RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 NCLP19338 710 aaKnown RBP17.72■□□□□ 0.43
TCOF1-207ENST00000504761 FBLN1P23142 703 aa17.72■□□□□ 0.43
TCOF1-207ENST00000504761 AMOTL2Q9Y2J4 779 aa17.72■□□□□ 0.43
TCOF1-207ENST00000504761 GNAI1P63096 354 aa17.71■□□□□ 0.43
TCOF1-207ENST00000504761 CENPQQ7L2Z9 268 aaPredicted RBP17.71■□□□□ 0.43
TCOF1-207ENST00000504761 USP35Q9P2H5 1018 aa17.71■□□□□ 0.43
TCOF1-207ENST00000504761 ANKRD45Q5TZF3 282 aa17.71■□□□□ 0.43
TCOF1-207ENST00000504761 NME9Q86XW9 330 aa17.71■□□□□ 0.43
TCOF1-207ENST00000504761 GPRASP1Q5JY77 1395 aa17.7■□□□□ 0.42
TCOF1-207ENST00000504761 SCAF11Q99590 1463 aaKnown RBP17.69■□□□□ 0.42
TCOF1-207ENST00000504761 HMMRO75330 724 aa17.69■□□□□ 0.42
TCOF1-207ENST00000504761 SLKQ9H2G2 1235 aaPredicted RBP17.69■□□□□ 0.42
TCOF1-207ENST00000504761 PDE4AP27815 886 aa17.68■□□□□ 0.42
TCOF1-207ENST00000504761 FKBP5Q13451 457 aaPredicted RBP17.68■□□□□ 0.42
TCOF1-207ENST00000504761 RAPGEF4Q8WZA2 1011 aa17.68■□□□□ 0.42
TCOF1-207ENST00000504761 CHMP4AQ9BY43 222 aa17.68■□□□□ 0.42
TCOF1-207ENST00000504761 DNMT1P26358 1616 aaKnown RBP17.67■□□□□ 0.42
TCOF1-207ENST00000504761 FGD1P98174 961 aa17.67■□□□□ 0.42
TCOF1-207ENST00000504761 PRAG1Q86YV5 1406 aa17.67■□□□□ 0.42
TCOF1-207ENST00000504761 TRIM6-TRIM34B2RNG4 842 aa17.67■□□□□ 0.42
TCOF1-207ENST00000504761 ABCC10Q5T3U5 1492 aa17.67■□□□□ 0.42
TCOF1-207ENST00000504761 SYTL4Q96C24 671 aaPredicted RBP17.66■□□□□ 0.42
TCOF1-207ENST00000504761 THUMPD2Q9BTF0 503 aaKnown RBP17.66■□□□□ 0.42
TCOF1-207ENST00000504761 HSCBQ8IWL3 235 aa17.66■□□□□ 0.42
TCOF1-207ENST00000504761 TESK2Q96S53 571 aa17.66■□□□□ 0.42
TCOF1-207ENST00000504761 WASLO00401 505 aaPredicted RBP17.66■□□□□ 0.42
TCOF1-207ENST00000504761 NAP1L2Q9ULW6 460 aaPredicted RBP17.66■□□□□ 0.42
TCOF1-207ENST00000504761 DDX19BQ9UMR2 479 aa17.66■□□□□ 0.42
TCOF1-207ENST00000504761 EMILIN1Q9Y6C2 1016 aa17.66■□□□□ 0.42
TCOF1-207ENST00000504761 SHANK2Q9UPX8 1470 aa17.65■□□□□ 0.42
TCOF1-207ENST00000504761 TTC5Q8N0Z6 440 aa17.64■□□□□ 0.41
TCOF1-207ENST00000504761 GOLGA6L22H0YM25 854 aa17.64■□□□□ 0.41
TCOF1-207ENST00000504761 FOXO3O43524 673 aa17.63■□□□□ 0.41
TCOF1-207ENST00000504761 SLC4A3P48751 1232 aa17.63■□□□□ 0.41
TCOF1-207ENST00000504761 PPP6R1Q9UPN7 881 aa17.63■□□□□ 0.41
TCOF1-207ENST00000504761 ZC3H6P61129 1189 aaKnown RBP17.62■□□□□ 0.41
TCOF1-207ENST00000504761 WWC1Q8IX03 1113 aa17.62■□□□□ 0.41
TCOF1-207ENST00000504761 API5Q9BZZ5 524 aaKnown RBP17.62■□□□□ 0.41
TCOF1-207ENST00000504761 EIF5BO60841 1220 aaKnown RBP17.61■□□□□ 0.41
TCOF1-207ENST00000504761 RALGAPBQ86X10 1494 aa17.61■□□□□ 0.41
TCOF1-207ENST00000504761 KIF16BQ96L93 1317 aa17.61■□□□□ 0.41
TCOF1-207ENST00000504761 LNPKQ9C0E8 428 aa17.61■□□□□ 0.41
TCOF1-207ENST00000504761 TNRQ92752 1358 aa17.6■□□□□ 0.41
TCOF1-207ENST00000504761 AIMP1Q12904 312 aaKnown RBP17.6■□□□□ 0.41
TCOF1-207ENST00000504761 DCTN1Q14203 1278 aa17.6■□□□□ 0.41
TCOF1-207ENST00000504761 TWISTNBQ3B726 338 aaPredicted RBP17.6■□□□□ 0.41
TCOF1-207ENST00000504761 TMPOP42166 694 aaKnown RBP17.6■□□□□ 0.41
TCOF1-207ENST00000504761 ZNF428Q96B54 188 aa17.59■□□□□ 0.41
TCOF1-207ENST00000504761 STRN4Q9NRL3 753 aa17.59■□□□□ 0.41
TCOF1-207ENST00000504761 KIAA1211Q6ZU35 1233 aa17.59■□□□□ 0.41
TCOF1-207ENST00000504761 C9orf78Q9NZ63 289 aaPredicted RBP17.59■□□□□ 0.41
TCOF1-207ENST00000504761 TAF7LQ5H9L4 462 aa17.59■□□□□ 0.41
TCOF1-207ENST00000504761 AMER1Q5JTC6 1135 aaPredicted RBP17.59■□□□□ 0.41
TCOF1-207ENST00000504761 ADGRL2O95490 1459 aa17.58■□□□□ 0.41
TCOF1-207ENST00000504761 FAM161AQ3B820 660 aa17.58■□□□□ 0.4
TCOF1-207ENST00000504761 IPO9Q96P70 1041 aaKnown RBP17.58■□□□□ 0.4
TCOF1-207ENST00000504761 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.58■□□□□ 0.4
TCOF1-207ENST00000504761 GAS2L2Q8NHY3 880 aa17.57■□□□□ 0.4
TCOF1-207ENST00000504761 MBD5Q9P267 1494 aa17.57■□□□□ 0.4
TCOF1-207ENST00000504761 MCCP23508 829 aa17.57■□□□□ 0.4
TCOF1-207ENST00000504761 GORABQ5T7V8 394 aa17.57■□□□□ 0.4
TCOF1-207ENST00000504761 ERCC6L2Q5T890 1561 aa17.57■□□□□ 0.4
TCOF1-207ENST00000504761 ABCA8O94911 1581 aa17.57■□□□□ 0.4
TCOF1-207ENST00000504761 C1orf115Q9H7X2 142 aa17.57■□□□□ 0.4
TCOF1-207ENST00000504761 MIS18AQ9NYP9 233 aa17.57■□□□□ 0.4
TCOF1-207ENST00000504761 NOB1Q9ULX3 412 aaKnown RBP17.57■□□□□ 0.4
TCOF1-207ENST00000504761 TEX14Q8IWB6 1497 aa17.57■□□□□ 0.4
TCOF1-207ENST00000504761 FCHSD2O94868 740 aa17.57■□□□□ 0.4
TCOF1-207ENST00000504761 SLFN5Q08AF3 891 aa17.57■□□□□ 0.4
TCOF1-207ENST00000504761 FOXD4L1Q9NU39 408 aa17.56■□□□□ 0.4
TCOF1-207ENST00000504761 RILPL2Q969X0 211 aa17.56■□□□□ 0.4
TCOF1-207ENST00000504761 CFAP65Q6ZU64 1925 aaKnown RBP17.55■□□□□ 0.4
TCOF1-207ENST00000504761 NOL8Q76FK4 1167 aaKnown RBP17.55■□□□□ 0.4
TCOF1-207ENST00000504761 SMG6Q86US8 1419 aaKnown RBP17.55■□□□□ 0.4
TCOF1-207ENST00000504761 WDR63Q8IWG1 891 aa17.55■□□□□ 0.4
TCOF1-207ENST00000504761 HDAC5Q9UQL6 1122 aa17.55■□□□□ 0.4
TCOF1-207ENST00000504761 NCKAP5LQ9HCH0 1330 aa17.54■□□□□ 0.4
TCOF1-207ENST00000504761 USHBP1Q8N6Y0 703 aa17.54■□□□□ 0.4
TCOF1-207ENST00000504761 UHRF1BP1LA0JNW5 1464 aa17.54■□□□□ 0.4
TCOF1-207ENST00000504761 C20orf194Q5TEA3 1177 aa17.54■□□□□ 0.4
TCOF1-207ENST00000504761 ZNF530Q6P9A1 599 aaPredicted RBP17.54■□□□□ 0.4
TCOF1-207ENST00000504761 MCM10Q7L590 875 aa17.54■□□□□ 0.4
TCOF1-207ENST00000504761 PHF8Q9UPP1 1060 aa17.54■□□□□ 0.4
TCOF1-207ENST00000504761 NEXNQ0ZGT2 675 aa17.53■□□□□ 0.4
TCOF1-207ENST00000504761 FYB1O15117 783 aa17.53■□□□□ 0.4
TCOF1-207ENST00000504761 CARD14Q9BXL6 1004 aa17.53■□□□□ 0.4
TCOF1-207ENST00000504761 SLC4A2P04920 1241 aa17.53■□□□□ 0.4
TCOF1-207ENST00000504761 ZRANB1Q9UGI0 708 aa17.53■□□□□ 0.4
TCOF1-207ENST00000504761 ATP7AQ04656 1500 aa17.53■□□□□ 0.4
TCOF1-207ENST00000504761 KDM6BO15054 1643 aa17.53■□□□□ 0.4
TCOF1-207ENST00000504761 GTF2E1P29083 439 aaPredicted RBP17.52■□□□□ 0.4
TCOF1-207ENST00000504761 ACEP12821 1306 aa17.52■□□□□ 0.4
TCOF1-207ENST00000504761 ZMYM3Q14202 1370 aa17.52■□□□□ 0.4
TCOF1-207ENST00000504761 PLEKHO1Q53GL0 409 aaPredicted RBP17.52■□□□□ 0.4
TCOF1-207ENST00000504761 NFE2L2Q16236 605 aa17.51■□□□□ 0.39
TCOF1-207ENST00000504761 PRDM11Q9NQV5 511 aa17.51■□□□□ 0.39
TCOF1-207ENST00000504761 RIMS2Q9UQ26 1411 aa17.5■□□□□ 0.39
TCOF1-207ENST00000504761 PER1O15534 1290 aaPredicted RBP17.49■□□□□ 0.39
TCOF1-207ENST00000504761 SKAP1Q86WV1 359 aa17.49■□□□□ 0.39
TCOF1-207ENST00000504761 DDX54Q8TDD1 881 aaKnown RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms