RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 MMP16P51512 607 aa6.72□□□□□ -1.33
HMGB1P35-201ENST00000503360 Q3C1V9 767 aa6.72□□□□□ -1.33
HMGB1P35-201ENST00000503360 AMER1Q5JTC6 1135 aaPredicted RBP6.72□□□□□ -1.33
HMGB1P35-201ENST00000503360 NPAS3Q8IXF0 933 aa6.72□□□□□ -1.33
HMGB1P35-201ENST00000503360 FAM181BA6NEQ2 426 aa6.71□□□□□ -1.34
HMGB1P35-201ENST00000503360 RDH13Q8NBN7 331 aa6.71□□□□□ -1.34
HMGB1P35-201ENST00000503360 GNPATO15228 680 aa6.7□□□□□ -1.34
HMGB1P35-201ENST00000503360 TRIM32Q13049 653 aa6.7□□□□□ -1.34
HMGB1P35-201ENST00000503360 SMYD5Q6GMV2 418 aa6.69□□□□□ -1.34
HMGB1P35-201ENST00000503360 DDX11L8A8MPP1 907 aa6.68□□□□□ -1.34
HMGB1P35-201ENST00000503360 SNRPBP14678 240 aaKnown RBP6.68□□□□□ -1.34
HMGB1P35-201ENST00000503360 WNT7BP56706 349 aa6.68□□□□□ -1.34
HMGB1P35-201ENST00000503360 LCE2CQ5TA81 110 aa6.68□□□□□ -1.34
HMGB1P35-201ENST00000503360 DXOO77932 396 aaKnown RBP6.67□□□□□ -1.34
HMGB1P35-201ENST00000503360 SLC16A10Q8TF71 515 aa6.67□□□□□ -1.34
HMGB1P35-201ENST00000503360 MRGPRX2Q96LB1 330 aa6.67□□□□□ -1.34
HMGB1P35-201ENST00000503360 PRDM9Q9NQV7 894 aa6.67□□□□□ -1.34
HMGB1P35-201ENST00000503360 TESPA1A2RU30 521 aaPredicted RBP6.66□□□□□ -1.34
HMGB1P35-201ENST00000503360 SEMA3EO15041 775 aa6.66□□□□□ -1.34
HMGB1P35-201ENST00000503360 GPR37O15354 613 aa6.65□□□□□ -1.34
HMGB1P35-201ENST00000503360 RNF19BQ6ZMZ0 732 aa6.65□□□□□ -1.34
HMGB1P35-201ENST00000503360 TSHZ2Q9NRE2 1034 aa6.65□□□□□ -1.34
HMGB1P35-201ENST00000503360 J3QL48 77 aa6.64□□□□□ -1.35
HMGB1P35-201ENST00000503360 USB1Q9BQ65 265 aaKnown RBP6.64□□□□□ -1.35
HMGB1P35-201ENST00000503360 FECHP22830 423 aa6.63□□□□□ -1.35
HMGB1P35-201ENST00000503360 USP46P62068 366 aa6.63□□□□□ -1.35
HMGB1P35-201ENST00000503360 HPS1Q92902 700 aa6.63□□□□□ -1.35
HMGB1P35-201ENST00000503360 NXF1Q9UBU9 619 aaKnown RBP6.63□□□□□ -1.35
HMGB1P35-201ENST00000503360 RC3H1Q5TC82 1133 aaKnown RBP6.62□□□□□ -1.35
HMGB1P35-201ENST00000503360 CD46P15529 392 aa6.61□□□□□ -1.35
HMGB1P35-201ENST00000503360 IRF7Q92985 503 aa6.61□□□□□ -1.35
HMGB1P35-201ENST00000503360 LORP23490 312 aaPredicted RBP6.6□□□□□ -1.35
HMGB1P35-201ENST00000503360 PHOX2BQ99453 314 aa6.6□□□□□ -1.35
HMGB1P35-201ENST00000503360 LOC100996750A0A140TA64 210 aa6.59□□□□□ -1.35
HMGB1P35-201ENST00000503360 KDM4AO75164 1064 aa6.59□□□□□ -1.35
HMGB1P35-201ENST00000503360 RBM26Q5T8P6 1007 aaKnown RBP6.59□□□□□ -1.35
HMGB1P35-201ENST00000503360 ZSCAN1Q8NBB4 408 aa6.59□□□□□ -1.35
HMGB1P35-201ENST00000503360 KRTAP4-6Q9BYQ5 205 aa6.59□□□□□ -1.35
HMGB1P35-201ENST00000503360 H3BM21 787 aa6.58□□□□□ -1.36
HMGB1P35-201ENST00000503360 SIAH2O43255 324 aa6.58□□□□□ -1.36
HMGB1P35-201ENST00000503360 SKOR1P84550 965 aa6.58□□□□□ -1.36
HMGB1P35-201ENST00000503360 GMPRP36959 345 aa6.56□□□□□ -1.36
HMGB1P35-201ENST00000503360 MPNDQ8N594 471 aa6.56□□□□□ -1.36
HMGB1P35-201ENST00000503360 ALDH1A1P00352 501 aa6.55□□□□□ -1.36
HMGB1P35-201ENST00000503360 JUNDP17535 347 aa6.55□□□□□ -1.36
HMGB1P35-201ENST00000503360 NLRP7Q8WX94 980 aa6.55□□□□□ -1.36
HMGB1P35-201ENST00000503360 CAPN5O15484 640 aaPredicted RBP6.54□□□□□ -1.36
HMGB1P35-201ENST00000503360 VSIG8P0DPA2 414 aa6.54□□□□□ -1.36
HMGB1P35-201ENST00000503360 TRIM46Q7Z4K8 759 aa6.54□□□□□ -1.36
HMGB1P35-201ENST00000503360 CCDC24Q8N4L8 307 aa6.53□□□□□ -1.36
HMGB1P35-201ENST00000503360 RTN4Q9NQC3 1192 aaKnown RBP6.53□□□□□ -1.36
HMGB1P35-201ENST00000503360 HOXA2O43364 376 aa6.52□□□□□ -1.37
HMGB1P35-201ENST00000503360 MAP2K5Q13163 448 aa6.52□□□□□ -1.37
HMGB1P35-201ENST00000503360 RETREG3Q86VR2 466 aa6.52□□□□□ -1.37
HMGB1P35-201ENST00000503360 EHBP1Q8NDI1 1231 aa6.52□□□□□ -1.37
HMGB1P35-201ENST00000503360 GPIHBP1Q8IV16 184 aa6.51□□□□□ -1.37
HMGB1P35-201ENST00000503360 NUDT12Q9BQG2 462 aa6.51□□□□□ -1.37
HMGB1P35-201ENST00000503360 WASF2Q9Y6W5 498 aa6.51□□□□□ -1.37
HMGB1P35-201ENST00000503360 PLEKHG3A1L390 1219 aa6.49□□□□□ -1.37
HMGB1P35-201ENST00000503360 ERBB4Q15303 1308 aa6.48□□□□□ -1.37
HMGB1P35-201ENST00000503360 MINK1Q8N4C8 1332 aaPredicted RBP6.48□□□□□ -1.37
HMGB1P35-201ENST00000503360 IRF6O14896 467 aa6.47□□□□□ -1.37
HMGB1P35-201ENST00000503360 CCNYL3P0C7X3 344 aa6.47□□□□□ -1.37
HMGB1P35-201ENST00000503360 BMP1P13497 986 aa6.47□□□□□ -1.37
HMGB1P35-201ENST00000503360 VARSP26640 1264 aaKnown RBP6.47□□□□□ -1.37
HMGB1P35-201ENST00000503360 SH3BP2P78314 561 aa6.47□□□□□ -1.37
HMGB1P35-201ENST00000503360 KCNMA1Q12791 1236 aa6.47□□□□□ -1.37
HMGB1P35-201ENST00000503360 PTPRNQ16849 979 aa6.47□□□□□ -1.37
HMGB1P35-201ENST00000503360 PTCRAQ6ISU1 281 aaPredicted RBP6.47□□□□□ -1.37
HMGB1P35-201ENST00000503360 ZFP42Q96MM3 310 aa6.47□□□□□ -1.37
HMGB1P35-201ENST00000503360 SCARF1Q14162 830 aa6.46□□□□□ -1.38
HMGB1P35-201ENST00000503360 DESI1Q6ICB0 168 aa6.46□□□□□ -1.38
HMGB1P35-201ENST00000503360 EVA1BQ9NVM1 165 aa6.46□□□□□ -1.38
HMGB1P35-201ENST00000503360 MS4A1P11836 297 aa6.45□□□□□ -1.38
HMGB1P35-201ENST00000503360 CLCN1P35523 988 aa6.45□□□□□ -1.38
HMGB1P35-201ENST00000503360 HLA-CQ95604 372 aa6.45□□□□□ -1.38
HMGB1P35-201ENST00000503360 MRPL14Q6P1L8 145 aaKnown RBP6.44□□□□□ -1.38
HMGB1P35-201ENST00000503360 GPCPD1Q9NPB8 672 aa6.44□□□□□ -1.38
HMGB1P35-201ENST00000503360 FAM217BQ9NTX9 383 aaPredicted RBP6.44□□□□□ -1.38
HMGB1P35-201ENST00000503360 ADH1CP00326 375 aa6.43□□□□□ -1.38
HMGB1P35-201ENST00000503360 MDM2Q00987 491 aaPredicted RBP6.43□□□□□ -1.38
HMGB1P35-201ENST00000503360 SUZ12Q15022 739 aaKnown RBP6.43□□□□□ -1.38
HMGB1P35-201ENST00000503360 KLF16Q9BXK1 252 aaPredicted RBP6.43□□□□□ -1.38
HMGB1P35-201ENST00000503360 SPDYE5A6NIY4 337 aa6.42□□□□□ -1.38
HMGB1P35-201ENST00000503360 TIMP2P16035 220 aa6.42□□□□□ -1.38
HMGB1P35-201ENST00000503360 KCNH2Q12809 1159 aa6.42□□□□□ -1.38
HMGB1P35-201ENST00000503360 NNTQ13423 1086 aa6.42□□□□□ -1.38
HMGB1P35-201ENST00000503360 NUTM1Q86Y26 1132 aa6.42□□□□□ -1.38
HMGB1P35-201ENST00000503360 UNC93B1Q9H1C4 597 aa6.42□□□□□ -1.38
HMGB1P35-201ENST00000503360 FDX1P10109 184 aa6.41□□□□□ -1.38
HMGB1P35-201ENST00000503360 VEGFBP49765 207 aa6.41□□□□□ -1.38
HMGB1P35-201ENST00000503360 ZNF511Q8NB15 262 aa6.41□□□□□ -1.38
HMGB1P35-201ENST00000503360 CDK15Q96Q40 435 aa6.41□□□□□ -1.38
HMGB1P35-201ENST00000503360 GJA5P36382 358 aa6.4□□□□□ -1.38
HMGB1P35-201ENST00000503360 GUCA2AQ02747 115 aa6.4□□□□□ -1.38
HMGB1P35-201ENST00000503360 SYMPKQ92797 1274 aaKnown RBP6.4□□□□□ -1.38
HMGB1P35-201ENST00000503360 PCDHGC3Q9UN70 934 aa6.4□□□□□ -1.38
HMGB1P35-201ENST00000503360 GSK3AP49840 483 aa6.39□□□□□ -1.39
HMGB1P35-201ENST00000503360 FAM174AQ8TBP5 190 aa6.39□□□□□ -1.39
HMGB1P35-201ENST00000503360 RNF225M0QZC1 329 aaPredicted RBP6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms