RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 MMP16P51512 607 aa10.89□□□□□ -0.67
SMC4-227ENST00000497984 USP46P62068 366 aa10.89□□□□□ -0.67
SMC4-227ENST00000497984 FOXC1Q12948 553 aa10.89□□□□□ -0.67
SMC4-227ENST00000497984 GPCPD1Q9NPB8 672 aa10.89□□□□□ -0.67
SMC4-227ENST00000497984 CLCN1P35523 988 aa10.88□□□□□ -0.67
SMC4-227ENST00000497984 HOXA2O43364 376 aa10.87□□□□□ -0.67
SMC4-227ENST00000497984 CD2BP2O95400 341 aaKnown RBP10.87□□□□□ -0.67
SMC4-227ENST00000497984 REPIN1Q9BWE0 567 aaKnown RBP10.87□□□□□ -0.67
SMC4-227ENST00000497984 USB1Q9BQ65 265 aaKnown RBP10.86□□□□□ -0.67
SMC4-227ENST00000497984 DXOO77932 396 aaKnown RBP10.85□□□□□ -0.67
SMC4-227ENST00000497984 TOR4AQ9NXH8 423 aa10.85□□□□□ -0.67
SMC4-227ENST00000497984 GUCA2AQ02747 115 aa10.84□□□□□ -0.67
SMC4-227ENST00000497984 ZBTB24O43167 697 aaPredicted RBP10.82□□□□□ -0.68
SMC4-227ENST00000497984 BARGINQ6ZT62 677 aa10.82□□□□□ -0.68
SMC4-227ENST00000497984 POTECB2RU33 542 aa10.81□□□□□ -0.68
SMC4-227ENST00000497984 ST8SIA5O15466 376 aa10.81□□□□□ -0.68
SMC4-227ENST00000497984 ZMYND10O75800 440 aa10.81□□□□□ -0.68
SMC4-227ENST00000497984 TRIM32Q13049 653 aa10.81□□□□□ -0.68
SMC4-227ENST00000497984 AAASQ9NRG9 546 aa10.81□□□□□ -0.68
SMC4-227ENST00000497984 AVPP01185 164 aa10.79□□□□□ -0.68
SMC4-227ENST00000497984 CYP4X1Q8N118 509 aa10.79□□□□□ -0.68
SMC4-227ENST00000497984 SYMPKQ92797 1274 aaKnown RBP10.79□□□□□ -0.68
SMC4-227ENST00000497984 CRIPAKQ8N1N5 446 aa10.78□□□□□ -0.68
SMC4-227ENST00000497984 KRI1Q8N9T8 703 aaKnown RBP10.78□□□□□ -0.68
SMC4-227ENST00000497984 ZC3H15Q8WU90 426 aaKnown RBP10.78□□□□□ -0.68
SMC4-227ENST00000497984 WNT7AO00755 349 aa10.77□□□□□ -0.69
SMC4-227ENST00000497984 SSTR3P32745 418 aaPredicted RBP10.77□□□□□ -0.69
SMC4-227ENST00000497984 NUTM1Q86Y26 1132 aa10.77□□□□□ -0.69
SMC4-227ENST00000497984 AMHR2Q16671 573 aa10.76□□□□□ -0.69
SMC4-227ENST00000497984 PCDHGC3Q9UN70 934 aa10.76□□□□□ -0.69
SMC4-227ENST00000497984 JUNDP17535 347 aa10.75□□□□□ -0.69
SMC4-227ENST00000497984 FDX1P10109 184 aa10.74□□□□□ -0.69
SMC4-227ENST00000497984 RETREG3Q86VR2 466 aa10.74□□□□□ -0.69
SMC4-227ENST00000497984 SPIRE2Q8WWL2 714 aa10.74□□□□□ -0.69
SMC4-227ENST00000497984 CCDC24Q8N4L8 307 aa10.73□□□□□ -0.69
SMC4-227ENST00000497984 DACH1Q9UI36 760 aa10.73□□□□□ -0.69
SMC4-227ENST00000497984 TTC24A2A3L6 582 aaPredicted RBP10.72□□□□□ -0.69
SMC4-227ENST00000497984 SKOR1P84550 965 aa10.72□□□□□ -0.69
SMC4-227ENST00000497984 TTLL12Q14166 644 aaPredicted RBP10.72□□□□□ -0.69
SMC4-227ENST00000497984 LCE2AQ5TA79 106 aaPredicted RBP10.72□□□□□ -0.69
SMC4-227ENST00000497984 MRGPRX2Q96LB1 330 aa10.72□□□□□ -0.69
SMC4-227ENST00000497984 SMPD1P17405 629 aa10.71□□□□□ -0.69
SMC4-227ENST00000497984 SMCPP49901 116 aaPredicted RBP10.71□□□□□ -0.69
SMC4-227ENST00000497984 GIGYF2Q6Y7W6 1299 aaKnown RBP10.71□□□□□ -0.69
SMC4-227ENST00000497984 SNIP1Q8TAD8 396 aaKnown RBP10.71□□□□□ -0.69
SMC4-227ENST00000497984 CTC1Q2NKJ3 1217 aa10.7□□□□□ -0.7
SMC4-227ENST00000497984 MOXD2PA6NHM9 499 aa10.69□□□□□ -0.7
SMC4-227ENST00000497984 AXIN1O15169 862 aa10.69□□□□□ -0.7
SMC4-227ENST00000497984 NDUFV2P19404 249 aa10.69□□□□□ -0.7
SMC4-227ENST00000497984 C6orf229H3BNL8 230 aa10.68□□□□□ -0.7
SMC4-227ENST00000497984 WNT7BP56706 349 aa10.68□□□□□ -0.7
SMC4-227ENST00000497984 RC3H1Q5TC82 1133 aaKnown RBP10.68□□□□□ -0.7
SMC4-227ENST00000497984 NUDT12Q9BQG2 462 aa10.68□□□□□ -0.7
SMC4-227ENST00000497984 J3QL48 77 aa10.67□□□□□ -0.7
SMC4-227ENST00000497984 PTCRAQ6ISU1 281 aaPredicted RBP10.67□□□□□ -0.7
SMC4-227ENST00000497984 PARP9Q8IXQ6 854 aa10.66□□□□□ -0.7
SMC4-227ENST00000497984 TREML4Q6UXN2 200 aa10.65□□□□□ -0.7
SMC4-227ENST00000497984 BEGAINQ9BUH8 593 aa10.65□□□□□ -0.7
SMC4-227ENST00000497984 GMPR2Q9P2T1 348 aaKnown RBP10.65□□□□□ -0.7
SMC4-227ENST00000497984 TRIM66O15016 1216 aa10.64□□□□□ -0.71
SMC4-227ENST00000497984 MS4A1P11836 297 aa10.63□□□□□ -0.71
SMC4-227ENST00000497984 CCNYL3P0C7X3 344 aa10.62□□□□□ -0.71
SMC4-227ENST00000497984 PTPRNQ16849 979 aa10.62□□□□□ -0.71
SMC4-227ENST00000497984 HPS1Q92902 700 aa10.62□□□□□ -0.71
SMC4-227ENST00000497984 MTMR2Q13614 643 aa10.61□□□□□ -0.71
SMC4-227ENST00000497984 PRR7Q8TB68 274 aa10.61□□□□□ -0.71
SMC4-227ENST00000497984 TBC1D2Q9BYX2 928 aa10.61□□□□□ -0.71
SMC4-227ENST00000497984 LOC100996750A0A140TA64 210 aa10.6□□□□□ -0.71
SMC4-227ENST00000497984 SIAH2O43255 324 aa10.6□□□□□ -0.71
SMC4-227ENST00000497984 GJA5P36382 358 aa10.6□□□□□ -0.71
SMC4-227ENST00000497984 AK7Q96M32 723 aa10.6□□□□□ -0.71
SMC4-227ENST00000497984 KRTAP4-6Q9BYQ5 205 aa10.6□□□□□ -0.71
SMC4-227ENST00000497984 EVA1BQ9NVM1 165 aa10.6□□□□□ -0.71
SMC4-227ENST00000497984 SPDYE5A6NIY4 337 aa10.59□□□□□ -0.71
SMC4-227ENST00000497984 DESI1Q6ICB0 168 aa10.59□□□□□ -0.71
SMC4-227ENST00000497984 RSBN1LQ6PCB5 846 aaPredicted RBP10.59□□□□□ -0.71
SMC4-227ENST00000497984 SH3BP2P78314 561 aa10.58□□□□□ -0.72
SMC4-227ENST00000497984 ATP13A2Q9NQ11 1180 aa10.58□□□□□ -0.72
SMC4-227ENST00000497984 C11orf95C9JLR9 678 aaPredicted RBP10.57□□□□□ -0.72
SMC4-227ENST00000497984 UNC93B1Q9H1C4 597 aa10.57□□□□□ -0.72
SMC4-227ENST00000497984 PCDHB15Q9Y5E8 787 aa10.57□□□□□ -0.72
SMC4-227ENST00000497984 SPTLC1O15269 473 aa10.56□□□□□ -0.72
SMC4-227ENST00000497984 ALDH1A1P00352 501 aa10.56□□□□□ -0.72
SMC4-227ENST00000497984 KCNH2Q12809 1159 aa10.56□□□□□ -0.72
SMC4-227ENST00000497984 DIXDC1Q155Q3 683 aa10.56□□□□□ -0.72
SMC4-227ENST00000497984 EHBP1Q8NDI1 1231 aa10.56□□□□□ -0.72
SMC4-227ENST00000497984 CFAP99D6REC4 459 aa10.53□□□□□ -0.72
SMC4-227ENST00000497984 HRCP23327 699 aa10.53□□□□□ -0.72
SMC4-227ENST00000497984 LINC01559Q495D7 138 aa10.53□□□□□ -0.72
SMC4-227ENST00000497984 BAP1Q92560 729 aa10.53□□□□□ -0.72
SMC4-227ENST00000497984 PDE4DQ08499 809 aa10.52□□□□□ -0.73
SMC4-227ENST00000497984 LYPD8Q6UX82 237 aa10.52□□□□□ -0.73
SMC4-227ENST00000497984 SNRPBP14678 240 aaKnown RBP10.51□□□□□ -0.73
SMC4-227ENST00000497984 RIC3Q7Z5B4 369 aa10.51□□□□□ -0.73
SMC4-227ENST00000497984 TRIM47Q96LD4 638 aa10.51□□□□□ -0.73
SMC4-227ENST00000497984 PRPF38BQ5VTL8 546 aaKnown RBP10.5□□□□□ -0.73
SMC4-227ENST00000497984 ZNF511Q8NB15 262 aa10.5□□□□□ -0.73
SMC4-227ENST00000497984 CABLES1Q8TDN4 633 aa10.5□□□□□ -0.73
SMC4-227ENST00000497984 ZBTB3Q9H5J0 574 aa10.5□□□□□ -0.73
SMC4-227ENST00000497984 SENP2Q9HC62 589 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms