RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 DLC1Q96QB1 1528 aa27.77■■■□□ 2.04
HDAC4-212ENST00000495497 ROCK2O75116 1388 aaKnown RBP27.77■■■□□ 2.04
HDAC4-212ENST00000495497 TIMELESSQ9UNS1 1208 aa27.77■■■□□ 2.04
HDAC4-212ENST00000495497 NALCNQ8IZF0 1738 aa27.77■■■□□ 2.04
HDAC4-212ENST00000495497 CADPS2Q86UW7 1296 aa27.76■■■□□ 2.03
HDAC4-212ENST00000495497 SLAIN2Q9P270 581 aa27.76■■■□□ 2.03
HDAC4-212ENST00000495497 DCCP43146 1447 aa27.71■■■□□ 2.03
HDAC4-212ENST00000495497 MINK1Q8N4C8 1332 aaPredicted RBP27.69■■■□□ 2.02
HDAC4-212ENST00000495497 HIRIP3Q9BW71 556 aaPredicted RBP27.69■■■□□ 2.02
HDAC4-212ENST00000495497 RALGAPBQ86X10 1494 aa27.69■■■□□ 2.02
HDAC4-212ENST00000495497 ARHGEF28Q8N1W1 1705 aaKnown RBP27.68■■■□□ 2.02
HDAC4-212ENST00000495497 CARD11Q9BXL7 1154 aa27.68■■■□□ 2.02
HDAC4-212ENST00000495497 GPRASP1Q5JY77 1395 aa27.68■■■□□ 2.02
HDAC4-212ENST00000495497 MST1RQ04912 1400 aa27.67■■■□□ 2.02
HDAC4-212ENST00000495497 NUTM2FA1L443 756 aa27.67■■■□□ 2.02
HDAC4-212ENST00000495497 CDC42BPGQ6DT37 1551 aa27.63■■■□□ 2.01
HDAC4-212ENST00000495497 CENPJQ9HC77 1338 aaPredicted RBP27.63■■■□□ 2.01
HDAC4-212ENST00000495497 HSPA1LP34931 641 aa27.62■■■□□ 2.01
HDAC4-212ENST00000495497 C1orf167Q5SNV9 1468 aa27.62■■■□□ 2.01
HDAC4-212ENST00000495497 ROBO1Q9Y6N7 1651 aa27.61■■■□□ 2.01
HDAC4-212ENST00000495497 BRINP3Q76B58 766 aa27.6■■■□□ 2.01
HDAC4-212ENST00000495497 ORAI2Q96SN7 254 aa27.6■■■□□ 2.01
HDAC4-212ENST00000495497 WASLO00401 505 aaPredicted RBP27.57■■■□□ 2
HDAC4-212ENST00000495497 ADGRB2O60241 1585 aa27.55■■■□□ 2
HDAC4-212ENST00000495497 EIF3AQ14152 1382 aaKnown RBP27.54■■■□□ 2
HDAC4-212ENST00000495497 ESCO1Q5FWF5 840 aa27.54■■■□□ 2
HDAC4-212ENST00000495497 DDX17Q92841 729 aaKnown RBP27.54■■■□□ 2
HDAC4-212ENST00000495497 FMN2Q9NZ56 1722 aa27.54■■■□□ 2
HDAC4-212ENST00000495497 CDK19Q9BWU1 502 aa27.53■■■□□ 2
HDAC4-212ENST00000495497 QRICH2Q9H0J4 1663 aa27.5■■□□□ 1.99
HDAC4-212ENST00000495497 PRR36Q9H6K5 1346 aa27.5■■□□□ 1.99
HDAC4-212ENST00000495497 ST20-MTHFSA0A0A6YYL1 179 aa27.47■■□□□ 1.99
HDAC4-212ENST00000495497 CABP2Q9NPB3 220 aa27.46■■□□□ 1.99
HDAC4-212ENST00000495497 USP32Q8NFA0 1604 aa27.45■■□□□ 1.99
HDAC4-212ENST00000495497 SRPK2P78362 688 aaKnown RBP27.45■■□□□ 1.98
HDAC4-212ENST00000495497 NUDT16Q96DE0 195 aaKnown RBP27.45■■□□□ 1.98
HDAC4-212ENST00000495497 TULP4Q9NRJ4 1543 aa27.45■■□□□ 1.98
HDAC4-212ENST00000495497 USP47Q96K76 1375 aa27.45■■□□□ 1.98
HDAC4-212ENST00000495497 ANKARQ7Z5J8 1434 aa27.44■■□□□ 1.98
HDAC4-212ENST00000495497 PMFBP1Q8TBY8 1022 aa27.44■■□□□ 1.98
HDAC4-212ENST00000495497 PHF8Q9UPP1 1060 aa27.43■■□□□ 1.98
HDAC4-212ENST00000495497 FOXO3O43524 673 aa27.42■■□□□ 1.98
HDAC4-212ENST00000495497 RGPD8O14715 1765 aaPredicted RBP27.42■■□□□ 1.98
HDAC4-212ENST00000495497 EVC2Q86UK5 1308 aa27.41■■□□□ 1.98
HDAC4-212ENST00000495497 AHDC1Q5TGY3 1603 aaPredicted RBP27.41■■□□□ 1.98
HDAC4-212ENST00000495497 PHLPP1O60346 1717 aa27.41■■□□□ 1.98
HDAC4-212ENST00000495497 ATP7BP35670 1465 aa27.4■■□□□ 1.98
HDAC4-212ENST00000495497 XPCQ01831 940 aaPredicted RBP27.4■■□□□ 1.98
HDAC4-212ENST00000495497 TESK2Q96S53 571 aa27.39■■□□□ 1.98
HDAC4-212ENST00000495497 SBNO2Q9Y2G9 1366 aa27.38■■□□□ 1.97
HDAC4-212ENST00000495497 NHSL1Q5SYE7 1610 aa27.38■■□□□ 1.97
HDAC4-212ENST00000495497 COL16A1Q07092 1604 aaPredicted RBP27.37■■□□□ 1.97
HDAC4-212ENST00000495497 NPHP3Q7Z494 1330 aa27.36■■□□□ 1.97
HDAC4-212ENST00000495497 CCDC61Q9Y6R9 512 aa27.35■■□□□ 1.97
HDAC4-212ENST00000495497 SOS2Q07890 1332 aaPredicted RBP27.35■■□□□ 1.97
HDAC4-212ENST00000495497 KRT28Q7Z3Y7 464 aa27.33■■□□□ 1.97
HDAC4-212ENST00000495497 HSPA5P11021 654 aaKnown RBP27.32■■□□□ 1.96
HDAC4-212ENST00000495497 KIF1AQ12756 1690 aa27.32■■□□□ 1.96
HDAC4-212ENST00000495497 NGDNQ8NEJ9 315 aaKnown RBP27.31■■□□□ 1.96
HDAC4-212ENST00000495497 LRRC59Q96AG4 307 aaKnown RBP27.31■■□□□ 1.96
HDAC4-212ENST00000495497 PXDNQ92626 1479 aa27.31■■□□□ 1.96
HDAC4-212ENST00000495497 EIF4G2P78344 907 aaKnown RBP eCLIP27.3■■□□□ 1.96
HDAC4-212ENST00000495497 PSME1Q06323 249 aa27.3■■□□□ 1.96
HDAC4-212ENST00000495497 CABP1Q9NZU7 370 aa27.3■■□□□ 1.96
HDAC4-212ENST00000495497 PPIP5K1Q6PFW1 1433 aa27.3■■□□□ 1.96
HDAC4-212ENST00000495497 JCADQ9P266 1359 aa27.28■■□□□ 1.96
HDAC4-212ENST00000495497 PLEKHG3A1L390 1219 aa27.28■■□□□ 1.96
HDAC4-212ENST00000495497 TOPAZ1Q8N9V7 1692 aa27.27■■□□□ 1.96
HDAC4-212ENST00000495497 DISP3Q9P2K9 1392 aa27.27■■□□□ 1.96
HDAC4-212ENST00000495497 ACEP12821 1306 aa27.27■■□□□ 1.96
HDAC4-212ENST00000495497 ITSN1Q15811 1721 aa27.25■■□□□ 1.95
HDAC4-212ENST00000495497 TMF1P82094 1093 aa27.25■■□□□ 1.95
HDAC4-212ENST00000495497 ATAD2Q6PL18 1390 aa27.23■■□□□ 1.95
HDAC4-212ENST00000495497 POLR3AO14802 1390 aaPredicted RBP27.22■■□□□ 1.95
HDAC4-212ENST00000495497 PNPLA6Q8IY17 1366 aa27.22■■□□□ 1.95
HDAC4-212ENST00000495497 SLC24A1O60721 1099 aa27.22■■□□□ 1.95
HDAC4-212ENST00000495497 SPATA31A3Q5VYP0 1347 aa27.21■■□□□ 1.95
HDAC4-212ENST00000495497 TMC1Q8TDI8 760 aa27.21■■□□□ 1.95
HDAC4-212ENST00000495497 LMOD2Q6P5Q4 547 aa27.19■■□□□ 1.94
HDAC4-212ENST00000495497 PUS7Q96PZ0 661 aaKnown RBP27.19■■□□□ 1.94
HDAC4-212ENST00000495497 NUTM2BA6NNL0 878 aaPredicted RBP27.18■■□□□ 1.94
HDAC4-212ENST00000495497 NUTM2EB1AL46 878 aaPredicted RBP27.18■■□□□ 1.94
HDAC4-212ENST00000495497 PAK3O75914 559 aaPredicted RBP27.18■■□□□ 1.94
HDAC4-212ENST00000495497 NUTM2AQ8IVF1 878 aaPredicted RBP27.18■■□□□ 1.94
HDAC4-212ENST00000495497 SLC12A5Q9H2X9 1139 aa27.18■■□□□ 1.94
HDAC4-212ENST00000495497 SBNO1A3KN83 1393 aa27.18■■□□□ 1.94
HDAC4-212ENST00000495497 PLEKHG5O94827 1062 aa27.17■■□□□ 1.94
HDAC4-212ENST00000495497 TNS3Q68CZ2 1445 aa27.16■■□□□ 1.94
HDAC4-212ENST00000495497 SHPRHQ149N8 1683 aa27.16■■□□□ 1.94
HDAC4-212ENST00000495497 SPATA31A6Q5VVP1 1343 aa27.15■■□□□ 1.94
HDAC4-212ENST00000495497 TRPM3Q9HCF6 1732 aaPredicted RBP27.13■■□□□ 1.93
HDAC4-212ENST00000495497 CDCA8Q53HL2 280 aa27.12■■□□□ 1.93
HDAC4-212ENST00000495497 POLR3GLQ9BT43 218 aa27.12■■□□□ 1.93
HDAC4-212ENST00000495497 LRP6O75581 1613 aa27.12■■□□□ 1.93
HDAC4-212ENST00000495497 C11orf95C9JLR9 678 aaPredicted RBP27.11■■□□□ 1.93
HDAC4-212ENST00000495497 MED1Q15648 1581 aaPredicted RBP27.1■■□□□ 1.93
HDAC4-212ENST00000495497 USP6P35125 1406 aa27.1■■□□□ 1.93
HDAC4-212ENST00000495497 CABLES1Q8TDN4 633 aa27.1■■□□□ 1.93
HDAC4-212ENST00000495497 CD163L1Q9NR16 1453 aa27.1■■□□□ 1.93
HDAC4-212ENST00000495497 CPSF1Q10570 1443 aaKnown RBP27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms