RNA–Protein interactions for RNA: ENST00000494795.1

SAMM50-206, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

TSL 2

Gene SAMM50, Length 3,248 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-206ENST00000494795 SPINK5Q9NQ38 1064 aaPredicted RBP13.88□□□□□ -0.19
SAMM50-206ENST00000494795 FBLN1P23142 703 aa13.87□□□□□ -0.19
SAMM50-206ENST00000494795 SBNO2Q9Y2G9 1366 aa13.87□□□□□ -0.19
SAMM50-206ENST00000494795 WDR43Q15061 677 aaKnown RBP eCLIP13.87□□□□□ -0.19
SAMM50-206ENST00000494795 PPP4R2Q9NY27 417 aa13.87□□□□□ -0.19
SAMM50-206ENST00000494795 RNF123Q5XPI4 1314 aa13.87□□□□□ -0.19
SAMM50-206ENST00000494795 SRPK2P78362 688 aaKnown RBP13.86□□□□□ -0.19
SAMM50-206ENST00000494795 ZMYM3Q14202 1370 aa13.85□□□□□ -0.19
SAMM50-206ENST00000494795 APAF1O14727 1248 aa13.85□□□□□ -0.19
SAMM50-206ENST00000494795 NCKAP5LQ9HCH0 1330 aa13.85□□□□□ -0.19
SAMM50-206ENST00000494795 A2ML1A8K2U0 1454 aa13.85□□□□□ -0.19
SAMM50-206ENST00000494795 RCAN3Q9UKA8 241 aa13.85□□□□□ -0.19
SAMM50-206ENST00000494795 PTPRMP28827 1452 aa13.84□□□□□ -0.19
SAMM50-206ENST00000494795 MORC1Q86VD1 984 aa13.84□□□□□ -0.19
SAMM50-206ENST00000494795 POGKQ9P215 609 aa13.84□□□□□ -0.19
SAMM50-206ENST00000494795 YTHDC2Q9H6S0 1430 aaKnown RBP13.84□□□□□ -0.19
SAMM50-206ENST00000494795 EXOC6Q8TAG9 804 aa13.84□□□□□ -0.19
SAMM50-206ENST00000494795 EVC2Q86UK5 1308 aa13.84□□□□□ -0.19
SAMM50-206ENST00000494795 GGNBP2Q9H3C7 697 aa13.83□□□□□ -0.19
SAMM50-206ENST00000494795 RRP7AQ9Y3A4 280 aaKnown RBP13.83□□□□□ -0.2
SAMM50-206ENST00000494795 ALKQ9UM73 1620 aa13.83□□□□□ -0.2
SAMM50-206ENST00000494795 AGLP35573 1532 aa13.82□□□□□ -0.2
SAMM50-206ENST00000494795 NEUROD2Q15784 382 aa13.82□□□□□ -0.2
SAMM50-206ENST00000494795 C20orf194Q5TEA3 1177 aa13.82□□□□□ -0.2
SAMM50-206ENST00000494795 MTHFSP49914 203 aa13.82□□□□□ -0.2
SAMM50-206ENST00000494795 RRP1P56182 461 aaKnown RBP13.82□□□□□ -0.2
SAMM50-206ENST00000494795 RBM19Q9Y4C8 960 aaKnown RBP13.82□□□□□ -0.2
SAMM50-206ENST00000494795 A0A1W2PP64 1363 aa13.82□□□□□ -0.2
SAMM50-206ENST00000494795 ARHGEF40Q8TER5 1519 aa13.82□□□□□ -0.2
SAMM50-206ENST00000494795 METP08581 1390 aa13.81□□□□□ -0.2
SAMM50-206ENST00000494795 NPC1L1Q9UHC9 1359 aa13.81□□□□□ -0.2
SAMM50-206ENST00000494795 ZFYVE9O95405 1425 aa13.81□□□□□ -0.2
SAMM50-206ENST00000494795 RIMS2Q9UQ26 1411 aa13.81□□□□□ -0.2
SAMM50-206ENST00000494795 TXNDC2Q86VQ3 553 aa13.81□□□□□ -0.2
SAMM50-206ENST00000494795 SKAP1Q86WV1 359 aa13.81□□□□□ -0.2
SAMM50-206ENST00000494795 CDK19Q9BWU1 502 aa13.81□□□□□ -0.2
SAMM50-206ENST00000494795 ESF1Q9H501 851 aaKnown RBP13.8□□□□□ -0.2
SAMM50-206ENST00000494795 CABP1Q9NZU7 370 aa13.8□□□□□ -0.2
SAMM50-206ENST00000494795 SPATA31D1Q6ZQQ2 1576 aa13.79□□□□□ -0.2
SAMM50-206ENST00000494795 REREQ9P2R6 1566 aa13.79□□□□□ -0.2
SAMM50-206ENST00000494795 ZNF521Q96K83 1311 aa13.79□□□□□ -0.2
SAMM50-206ENST00000494795 DUSP27Q5VZP5 1158 aa13.79□□□□□ -0.2
SAMM50-206ENST00000494795 TRHP20396 242 aaPredicted RBP13.78□□□□□ -0.2
SAMM50-206ENST00000494795 CD163L1Q9NR16 1453 aa13.78□□□□□ -0.2
SAMM50-206ENST00000494795 NUTM2FA1L443 756 aa13.77□□□□□ -0.21
SAMM50-206ENST00000494795 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.77□□□□□ -0.21
SAMM50-206ENST00000494795 LTKP29376 864 aa13.77□□□□□ -0.21
SAMM50-206ENST00000494795 ANKRD36BQ8N2N9 1353 aa13.77□□□□□ -0.21
SAMM50-206ENST00000494795 CCDC136Q96JN2 1154 aa13.76□□□□□ -0.21
SAMM50-206ENST00000494795 ZRANB1Q9UGI0 708 aa13.76□□□□□ -0.21
SAMM50-206ENST00000494795 CGNL1Q0VF96 1302 aa13.76□□□□□ -0.21
SAMM50-206ENST00000494795 FYB1O15117 783 aa13.76□□□□□ -0.21
SAMM50-206ENST00000494795 PDE3BQ13370 1112 aa13.75□□□□□ -0.21
SAMM50-206ENST00000494795 NCBP3Q53F19 620 aaKnown RBP13.75□□□□□ -0.21
SAMM50-206ENST00000494795 NRXN3Q9Y4C0 1643 aa13.74□□□□□ -0.21
SAMM50-206ENST00000494795 SLC26A8Q96RN1 970 aa13.74□□□□□ -0.21
SAMM50-206ENST00000494795 SHPRHQ149N8 1683 aa13.74□□□□□ -0.21
SAMM50-206ENST00000494795 GOLGA2Q08379 1002 aa13.73□□□□□ -0.21
SAMM50-206ENST00000494795 ERICH6BQ5W0A0 696 aa13.73□□□□□ -0.21
SAMM50-206ENST00000494795 CRBNQ96SW2 442 aa13.73□□□□□ -0.21
SAMM50-206ENST00000494795 SETD1AO15047 1707 aaKnown RBP13.73□□□□□ -0.21
SAMM50-206ENST00000494795 SLFN5Q08AF3 891 aa13.73□□□□□ -0.21
SAMM50-206ENST00000494795 TNRQ92752 1358 aa13.73□□□□□ -0.21
SAMM50-206ENST00000494795 BCAR3O75815 825 aa13.72□□□□□ -0.21
SAMM50-206ENST00000494795 POLR3AO14802 1390 aaPredicted RBP13.72□□□□□ -0.21
SAMM50-206ENST00000494795 TCP11L2Q8N4U5 519 aa13.71□□□□□ -0.21
SAMM50-206ENST00000494795 PPM1GO15355 546 aaPredicted RBP13.7□□□□□ -0.22
SAMM50-206ENST00000494795 WWC1Q8IX03 1113 aa13.7□□□□□ -0.22
SAMM50-206ENST00000494795 ABCC11Q96J66 1382 aa13.7□□□□□ -0.22
SAMM50-206ENST00000494795 U2AF1L5P0DN76 240 aaPredicted RBP13.7□□□□□ -0.22
SAMM50-206ENST00000494795 U2AF1Q01081 240 aaKnown RBP eCLIP13.7□□□□□ -0.22
SAMM50-206ENST00000494795 INSRP06213 1382 aa13.7□□□□□ -0.22
SAMM50-206ENST00000494795 NLRP1Q9C000 1473 aa13.69□□□□□ -0.22
SAMM50-206ENST00000494795 U2SURPO15042 1029 aaKnown RBP13.69□□□□□ -0.22
SAMM50-206ENST00000494795 ROBO2Q9HCK4 1378 aa13.69□□□□□ -0.22
SAMM50-206ENST00000494795 NME9Q86XW9 330 aa13.68□□□□□ -0.22
SAMM50-206ENST00000494795 TRMT2AQ8IZ69 625 aaKnown RBP13.68□□□□□ -0.22
SAMM50-206ENST00000494795 TMEM2Q9UHN6 1383 aa13.68□□□□□ -0.22
SAMM50-206ENST00000494795 PRR36Q9H6K5 1346 aa13.67□□□□□ -0.22
SAMM50-206ENST00000494795 PUS7Q96PZ0 661 aaKnown RBP13.67□□□□□ -0.22
SAMM50-206ENST00000494795 ATAD2Q6PL18 1390 aa13.67□□□□□ -0.22
SAMM50-206ENST00000494795 WASLO00401 505 aaPredicted RBP13.66□□□□□ -0.22
SAMM50-206ENST00000494795 TERF2IPQ9NYB0 399 aa13.66□□□□□ -0.22
SAMM50-206ENST00000494795 TNNQ9UQP3 1299 aa13.66□□□□□ -0.22
SAMM50-206ENST00000494795 BCL2L13Q9BXK5 485 aa13.66□□□□□ -0.22
SAMM50-206ENST00000494795 RBM33Q96EV2 1170 aaKnown RBP13.66□□□□□ -0.22
SAMM50-206ENST00000494795 ADAMTS13Q76LX8 1427 aa13.65□□□□□ -0.22
SAMM50-206ENST00000494795 UBR1Q8IWV7 1749 aa13.65□□□□□ -0.22
SAMM50-206ENST00000494795 MSH5O43196 834 aa13.65□□□□□ -0.22
SAMM50-206ENST00000494795 USP32Q8NFA0 1604 aa13.65□□□□□ -0.22
SAMM50-206ENST00000494795 RUNDC1Q96C34 613 aa13.65□□□□□ -0.22
SAMM50-206ENST00000494795 NUDT16Q96DE0 195 aaKnown RBP13.65□□□□□ -0.22
SAMM50-206ENST00000494795 EMILIN1Q9Y6C2 1016 aa13.65□□□□□ -0.22
SAMM50-206ENST00000494795 HDGFL2Q7Z4V5 671 aaPredicted RBP13.64□□□□□ -0.23
SAMM50-206ENST00000494795 PTPRUQ92729 1446 aa13.64□□□□□ -0.23
SAMM50-206ENST00000494795 PPIP5K1Q6PFW1 1433 aa13.63□□□□□ -0.23
SAMM50-206ENST00000494795 RRS1Q15050 365 aaKnown RBP13.63□□□□□ -0.23
SAMM50-206ENST00000494795 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.63□□□□□ -0.23
SAMM50-206ENST00000494795 TSR2Q969E8 191 aaKnown RBP13.62□□□□□ -0.23
SAMM50-206ENST00000494795 POLKQ9UBT6 870 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms