RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 KIAA1210Q9ULL0 1709 aa19.39■□□□□ 0.7
COL1A1-208ENST00000494334 POGKQ9P215 609 aa19.39■□□□□ 0.69
COL1A1-208ENST00000494334 TIMELESSQ9UNS1 1208 aa19.39■□□□□ 0.69
COL1A1-208ENST00000494334 SAFB2Q14151 953 aaKnown RBP eCLIP19.38■□□□□ 0.69
COL1A1-208ENST00000494334 NALCNQ8IZF0 1738 aa19.37■□□□□ 0.69
COL1A1-208ENST00000494334 ROCK2O75116 1388 aaKnown RBP19.35■□□□□ 0.69
COL1A1-208ENST00000494334 MST1RQ04912 1400 aa19.34■□□□□ 0.69
COL1A1-208ENST00000494334 TRPM1Q7Z4N2 1603 aa19.34■□□□□ 0.69
COL1A1-208ENST00000494334 HSPA1LP34931 641 aa19.33■□□□□ 0.68
COL1A1-208ENST00000494334 GPRASP1Q5JY77 1395 aa19.32■□□□□ 0.68
COL1A1-208ENST00000494334 BRINP3Q76B58 766 aa19.31■□□□□ 0.68
COL1A1-208ENST00000494334 MINK1Q8N4C8 1332 aaPredicted RBP19.3■□□□□ 0.68
COL1A1-208ENST00000494334 C1orf167Q5SNV9 1468 aa19.3■□□□□ 0.68
COL1A1-208ENST00000494334 HIRIP3Q9BW71 556 aaPredicted RBP19.3■□□□□ 0.68
COL1A1-208ENST00000494334 CDC42BPGQ6DT37 1551 aa19.29■□□□□ 0.68
COL1A1-208ENST00000494334 CARD11Q9BXL7 1154 aa19.29■□□□□ 0.68
COL1A1-208ENST00000494334 ROBO1Q9Y6N7 1651 aa19.29■□□□□ 0.68
COL1A1-208ENST00000494334 RALGAPBQ86X10 1494 aa19.28■□□□□ 0.68
COL1A1-208ENST00000494334 ARHGEF28Q8N1W1 1705 aaKnown RBP19.28■□□□□ 0.68
COL1A1-208ENST00000494334 NUTM2FA1L443 756 aa19.28■□□□□ 0.68
COL1A1-208ENST00000494334 ORAI2Q96SN7 254 aa19.27■□□□□ 0.68
COL1A1-208ENST00000494334 CENPJQ9HC77 1338 aaPredicted RBP19.26■□□□□ 0.67
COL1A1-208ENST00000494334 WASLO00401 505 aaPredicted RBP19.25■□□□□ 0.67
COL1A1-208ENST00000494334 ESCO1Q5FWF5 840 aa19.24■□□□□ 0.67
COL1A1-208ENST00000494334 ADGRB2O60241 1585 aa19.23■□□□□ 0.67
COL1A1-208ENST00000494334 EIF3AQ14152 1382 aaKnown RBP19.21■□□□□ 0.67
COL1A1-208ENST00000494334 DDX17Q92841 729 aaKnown RBP19.21■□□□□ 0.67
COL1A1-208ENST00000494334 CDK19Q9BWU1 502 aa19.21■□□□□ 0.67
COL1A1-208ENST00000494334 FMN2Q9NZ56 1722 aa19.2■□□□□ 0.66
COL1A1-208ENST00000494334 PRR36Q9H6K5 1346 aa19.19■□□□□ 0.66
COL1A1-208ENST00000494334 AHDC1Q5TGY3 1603 aaPredicted RBP19.18■□□□□ 0.66
COL1A1-208ENST00000494334 ANKARQ7Z5J8 1434 aa19.17■□□□□ 0.66
COL1A1-208ENST00000494334 FOXO3O43524 673 aa19.16■□□□□ 0.66
COL1A1-208ENST00000494334 NUDT16Q96DE0 195 aaKnown RBP19.16■□□□□ 0.66
COL1A1-208ENST00000494334 PHF8Q9UPP1 1060 aa19.16■□□□□ 0.66
COL1A1-208ENST00000494334 TULP4Q9NRJ4 1543 aa19.15■□□□□ 0.66
COL1A1-208ENST00000494334 PHLPP1O60346 1717 aa19.14■□□□□ 0.66
COL1A1-208ENST00000494334 ST20-MTHFSA0A0A6YYL1 179 aa19.14■□□□□ 0.65
COL1A1-208ENST00000494334 SRPK2P78362 688 aaKnown RBP19.14■□□□□ 0.65
COL1A1-208ENST00000494334 PMFBP1Q8TBY8 1022 aa19.14■□□□□ 0.65
COL1A1-208ENST00000494334 CABP2Q9NPB3 220 aa19.14■□□□□ 0.65
COL1A1-208ENST00000494334 SOS2Q07890 1332 aaPredicted RBP19.14■□□□□ 0.65
COL1A1-208ENST00000494334 NPHP3Q7Z494 1330 aa19.14■□□□□ 0.65
COL1A1-208ENST00000494334 USP32Q8NFA0 1604 aa19.14■□□□□ 0.65
COL1A1-208ENST00000494334 QRICH2Q9H0J4 1663 aa19.14■□□□□ 0.65
COL1A1-208ENST00000494334 EVC2Q86UK5 1308 aa19.13■□□□□ 0.65
COL1A1-208ENST00000494334 COL16A1Q07092 1604 aaPredicted RBP19.13■□□□□ 0.65
COL1A1-208ENST00000494334 NHSL1Q5SYE7 1610 aa19.13■□□□□ 0.65
COL1A1-208ENST00000494334 ATP7BP35670 1465 aa19.12■□□□□ 0.65
COL1A1-208ENST00000494334 SBNO2Q9Y2G9 1366 aa19.12■□□□□ 0.65
COL1A1-208ENST00000494334 LRRC59Q96AG4 307 aaKnown RBP19.12■□□□□ 0.65
COL1A1-208ENST00000494334 CCDC61Q9Y6R9 512 aa19.12■□□□□ 0.65
COL1A1-208ENST00000494334 USP47Q96K76 1375 aa19.11■□□□□ 0.65
COL1A1-208ENST00000494334 JCADQ9P266 1359 aa19.11■□□□□ 0.65
COL1A1-208ENST00000494334 XPCQ01831 940 aaPredicted RBP19.11■□□□□ 0.65
COL1A1-208ENST00000494334 RGPD8O14715 1765 aaPredicted RBP19.11■□□□□ 0.65
COL1A1-208ENST00000494334 TESK2Q96S53 571 aa19.1■□□□□ 0.65
COL1A1-208ENST00000494334 KRT28Q7Z3Y7 464 aa19.09■□□□□ 0.65
COL1A1-208ENST00000494334 PXDNQ92626 1479 aa19.08■□□□□ 0.64
COL1A1-208ENST00000494334 KIF1AQ12756 1690 aa19.08■□□□□ 0.64
COL1A1-208ENST00000494334 PLEKHG3A1L390 1219 aa19.07■□□□□ 0.64
COL1A1-208ENST00000494334 PSME1Q06323 249 aa19.07■□□□□ 0.64
COL1A1-208ENST00000494334 NGDNQ8NEJ9 315 aaKnown RBP19.07■□□□□ 0.64
COL1A1-208ENST00000494334 SLC24A1O60721 1099 aa19.05■□□□□ 0.64
COL1A1-208ENST00000494334 CABP1Q9NZU7 370 aa19.05■□□□□ 0.64
COL1A1-208ENST00000494334 ACEP12821 1306 aa19.04■□□□□ 0.64
COL1A1-208ENST00000494334 PPIP5K1Q6PFW1 1433 aa19.04■□□□□ 0.64
COL1A1-208ENST00000494334 PNPLA6Q8IY17 1366 aa19.04■□□□□ 0.64
COL1A1-208ENST00000494334 POLR3AO14802 1390 aaPredicted RBP19.03■□□□□ 0.64
COL1A1-208ENST00000494334 SPATA31A6Q5VVP1 1343 aa19.02■□□□□ 0.64
COL1A1-208ENST00000494334 SPATA31A3Q5VYP0 1347 aa19.02■□□□□ 0.64
COL1A1-208ENST00000494334 EIF4G2P78344 907 aaKnown RBP eCLIP19.02■□□□□ 0.64
COL1A1-208ENST00000494334 PUS7Q96PZ0 661 aaKnown RBP19.02■□□□□ 0.64
COL1A1-208ENST00000494334 ATAD2Q6PL18 1390 aa19.02■□□□□ 0.64
COL1A1-208ENST00000494334 SBNO1A3KN83 1393 aa19.01■□□□□ 0.63
COL1A1-208ENST00000494334 TOPAZ1Q8N9V7 1692 aa19.01■□□□□ 0.63
COL1A1-208ENST00000494334 ITSN1Q15811 1721 aa19■□□□□ 0.63
COL1A1-208ENST00000494334 HSPA5P11021 654 aaKnown RBP19■□□□□ 0.63
COL1A1-208ENST00000494334 TMF1P82094 1093 aa19■□□□□ 0.63
COL1A1-208ENST00000494334 SHPRHQ149N8 1683 aa18.99■□□□□ 0.63
COL1A1-208ENST00000494334 DISP3Q9P2K9 1392 aa18.99■□□□□ 0.63
COL1A1-208ENST00000494334 NUTM2BA6NNL0 878 aaPredicted RBP18.98■□□□□ 0.63
COL1A1-208ENST00000494334 NUTM2EB1AL46 878 aaPredicted RBP18.98■□□□□ 0.63
COL1A1-208ENST00000494334 NUTM2AQ8IVF1 878 aaPredicted RBP18.98■□□□□ 0.63
COL1A1-208ENST00000494334 TNS3Q68CZ2 1445 aa18.98■□□□□ 0.63
COL1A1-208ENST00000494334 LMOD2Q6P5Q4 547 aa18.97■□□□□ 0.63
COL1A1-208ENST00000494334 MED1Q15648 1581 aaPredicted RBP18.97■□□□□ 0.63
COL1A1-208ENST00000494334 PAK3O75914 559 aaPredicted RBP18.96■□□□□ 0.63
COL1A1-208ENST00000494334 TMC1Q8TDI8 760 aa18.96■□□□□ 0.63
COL1A1-208ENST00000494334 LRP6O75581 1613 aa18.96■□□□□ 0.63
COL1A1-208ENST00000494334 ZNF692Q9BU19 519 aaPredicted RBP18.95■□□□□ 0.62
COL1A1-208ENST00000494334 SLC12A5Q9H2X9 1139 aa18.95■□□□□ 0.62
COL1A1-208ENST00000494334 ARHGEF10O15013 1369 aa18.93■□□□□ 0.62
COL1A1-208ENST00000494334 CDCA8Q53HL2 280 aa18.93■□□□□ 0.62
COL1A1-208ENST00000494334 TRPM3Q9HCF6 1732 aaPredicted RBP18.93■□□□□ 0.62
COL1A1-208ENST00000494334 CPSF1Q10570 1443 aaKnown RBP18.92■□□□□ 0.62
COL1A1-208ENST00000494334 COL22A1Q8NFW1 1626 aaPredicted RBP18.92■□□□□ 0.62
COL1A1-208ENST00000494334 USP6P35125 1406 aa18.91■□□□□ 0.62
COL1A1-208ENST00000494334 MEX3CQ5U5Q3 659 aaKnown RBP18.91■□□□□ 0.62
COL1A1-208ENST00000494334 CABLES1Q8TDN4 633 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms