RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TRAK2O60296 914 aa20.15■□□□□ 0.82
CCDC88B-209ENST00000494080 EXOSC9Q06265 439 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-209ENST00000494080 SLC26A8Q96RN1 970 aa20.15■□□□□ 0.82
CCDC88B-209ENST00000494080 TEFQ10587 303 aa20.15■□□□□ 0.82
CCDC88B-209ENST00000494080 NPHP1O15259 732 aa20.15■□□□□ 0.82
CCDC88B-209ENST00000494080 NLRP6P59044 892 aa20.15■□□□□ 0.82
CCDC88B-209ENST00000494080 CHMP4AQ9BY43 222 aa20.14■□□□□ 0.82
CCDC88B-209ENST00000494080 GNAI1P63096 354 aa20.14■□□□□ 0.81
CCDC88B-209ENST00000494080 LNPKQ9C0E8 428 aa20.13■□□□□ 0.81
CCDC88B-209ENST00000494080 CHMP3Q9Y3E7 222 aa20.13■□□□□ 0.81
CCDC88B-209ENST00000494080 ADAMTS12P58397 1594 aa20.13■□□□□ 0.81
CCDC88B-209ENST00000494080 RPGRIP1LQ68CZ1 1315 aa20.12■□□□□ 0.81
CCDC88B-209ENST00000494080 NOL8Q76FK4 1167 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-209ENST00000494080 IDI1Q13907 227 aa20.12■□□□□ 0.81
CCDC88B-209ENST00000494080 FBXO31Q5XUX0 539 aaPredicted RBP20.12■□□□□ 0.81
CCDC88B-209ENST00000494080 KIF16BQ96L93 1317 aa20.11■□□□□ 0.81
CCDC88B-209ENST00000494080 KIF21AQ7Z4S6 1674 aa20.11■□□□□ 0.81
CCDC88B-209ENST00000494080 C22orf23Q9BZE7 217 aa20.1■□□□□ 0.81
CCDC88B-209ENST00000494080 API5Q9BZZ5 524 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-209ENST00000494080 FANCAO15360 1455 aa20.1■□□□□ 0.81
CCDC88B-209ENST00000494080 FOXD4L5Q5VV16 416 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-209ENST00000494080 FOXD4L4Q8WXT5 416 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-209ENST00000494080 WAPLQ7Z5K2 1190 aa20.1■□□□□ 0.81
CCDC88B-209ENST00000494080 NSD3Q9BZ95 1437 aa20.1■□□□□ 0.81
CCDC88B-209ENST00000494080 C1orf141Q5JVX7 400 aa20.09■□□□□ 0.81
CCDC88B-209ENST00000494080 TSPYL4Q9UJ04 414 aa20.09■□□□□ 0.81
CCDC88B-209ENST00000494080 WDR62O43379 1518 aa20.09■□□□□ 0.81
CCDC88B-209ENST00000494080 KIAA0556O60303 1618 aa20.08■□□□□ 0.81
CCDC88B-209ENST00000494080 FKBP5Q13451 457 aaPredicted RBP20.08■□□□□ 0.81
CCDC88B-209ENST00000494080 DISP3Q9P2K9 1392 aa20.08■□□□□ 0.81
CCDC88B-209ENST00000494080 DRC7Q8IY82 874 aa20.08■□□□□ 0.8
CCDC88B-209ENST00000494080 CFAP43Q8NDM7 1665 aa20.07■□□□□ 0.8
CCDC88B-209ENST00000494080 RILPL2Q969X0 211 aa20.07■□□□□ 0.8
CCDC88B-209ENST00000494080 ZMYND15Q9H091 742 aa20.07■□□□□ 0.8
CCDC88B-209ENST00000494080 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-209ENST00000494080 SYAP1Q96A49 352 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-209ENST00000494080 ZRSR1Q15695 479 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-209ENST00000494080 TCOF1Q13428 1488 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-209ENST00000494080 R3HCC1Q9Y3T6 440 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-209ENST00000494080 GOLGA6L4A6NEF3 574 aa20.05■□□□□ 0.8
CCDC88B-209ENST00000494080 RRS1Q15050 365 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-209ENST00000494080 SULT6B1Q6IMI4 303 aa20.04■□□□□ 0.8
CCDC88B-209ENST00000494080 ABTB2Q8N961 1025 aa20.04■□□□□ 0.8
CCDC88B-209ENST00000494080 WWC1Q8IX03 1113 aa20.04■□□□□ 0.8
CCDC88B-209ENST00000494080 RRP9O43818 475 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-209ENST00000494080 RTEL1-TNFRSF6BF6WH68 1400 aa20.03■□□□□ 0.8
CCDC88B-209ENST00000494080 DISP1Q96F81 1524 aa20.03■□□□□ 0.8
CCDC88B-209ENST00000494080 SYCP2Q9BX26 1530 aa20.03■□□□□ 0.8
CCDC88B-209ENST00000494080 DHX29Q7Z478 1369 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-209ENST00000494080 PLCH2O75038 1416 aa20.03■□□□□ 0.8
CCDC88B-209ENST00000494080 NASPP49321 788 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-209ENST00000494080 PDE3AQ14432 1141 aa20.02■□□□□ 0.8
CCDC88B-209ENST00000494080 C20orf194Q5TEA3 1177 aa20.02■□□□□ 0.8
CCDC88B-209ENST00000494080 HDAC5Q9UQL6 1122 aa20.02■□□□□ 0.8
CCDC88B-209ENST00000494080 ESPNB1AK53 854 aa20.02■□□□□ 0.8
CCDC88B-209ENST00000494080 SLFN5Q08AF3 891 aa20.02■□□□□ 0.8
CCDC88B-209ENST00000494080 RBM10P98175 930 aaKnown RBP20.02■□□□□ 0.79
CCDC88B-209ENST00000494080 NOS1P29475 1434 aa20.01■□□□□ 0.79
CCDC88B-209ENST00000494080 CCDC9Q9Y3X0 531 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-209ENST00000494080 TPM2P07951 284 aa20■□□□□ 0.79
CCDC88B-209ENST00000494080 TRAPPC8Q9Y2L5 1435 aa20■□□□□ 0.79
CCDC88B-209ENST00000494080 ATAD2Q6PL18 1390 aa20■□□□□ 0.79
CCDC88B-209ENST00000494080 MCM4P33991 863 aa20■□□□□ 0.79
CCDC88B-209ENST00000494080 C1orf115Q9H7X2 142 aa20■□□□□ 0.79
CCDC88B-209ENST00000494080 NOB1Q9ULX3 412 aaKnown RBP20■□□□□ 0.79
CCDC88B-209ENST00000494080 EIF4G3O43432 1585 aaKnown RBP19.99■□□□□ 0.79
CCDC88B-209ENST00000494080 TWISTNBQ3B726 338 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-209ENST00000494080 GORABQ5T7V8 394 aa19.99■□□□□ 0.79
CCDC88B-209ENST00000494080 GPATCH3Q96I76 525 aa19.99■□□□□ 0.79
CCDC88B-209ENST00000494080 GRPEL1Q9HAV7 217 aa19.99■□□□□ 0.79
CCDC88B-209ENST00000494080 ST18O60284 1047 aa19.98■□□□□ 0.79
CCDC88B-209ENST00000494080 FOXD4L6Q3SYB3 417 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-209ENST00000494080 ESCO1Q5FWF5 840 aa19.98■□□□□ 0.79
CCDC88B-209ENST00000494080 FOXD4L3Q6VB84 417 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-209ENST00000494080 WDR63Q8IWG1 891 aa19.98■□□□□ 0.79
CCDC88B-209ENST00000494080 C9orf78Q9NZ63 289 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-209ENST00000494080 PDZRN3Q9UPQ7 1066 aa19.98■□□□□ 0.79
CCDC88B-209ENST00000494080 THEMISQ8N1K5 641 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-209ENST00000494080 CCDC61Q9Y6R9 512 aa19.98■□□□□ 0.79
CCDC88B-209ENST00000494080 TAF7LQ5H9L4 462 aa19.97■□□□□ 0.79
CCDC88B-209ENST00000494080 NUDT16Q96DE0 195 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-209ENST00000494080 THUMPD2Q9BTF0 503 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-209ENST00000494080 ZNF692Q9BU19 519 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-209ENST00000494080 SCAF11Q99590 1463 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-209ENST00000494080 TMPOP42166 694 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-209ENST00000494080 ABCA5Q8WWZ7 1642 aa19.95■□□□□ 0.78
CCDC88B-209ENST00000494080 C14orf93Q9H972 538 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-209ENST00000494080 NLRP2Q9NX02 1062 aa19.95■□□□□ 0.78
CCDC88B-209ENST00000494080 MCTP1Q6DN14 999 aa19.94■□□□□ 0.78
CCDC88B-209ENST00000494080 AAMPQ13685 434 aa19.94■□□□□ 0.78
CCDC88B-209ENST00000494080 KDM5BQ9UGL1 1544 aa19.94■□□□□ 0.78
CCDC88B-209ENST00000494080 CSPP1Q1MSJ5 1256 aa19.93■□□□□ 0.78
CCDC88B-209ENST00000494080 TTC5Q8N0Z6 440 aa19.93■□□□□ 0.78
CCDC88B-209ENST00000494080 ASXL2Q76L83 1435 aa19.93■□□□□ 0.78
CCDC88B-209ENST00000494080 ITSN2Q9NZM3 1697 aa19.93■□□□□ 0.78
CCDC88B-209ENST00000494080 CEBPAP49715 358 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-209ENST00000494080 FAM135AQ9P2D6 1515 aa19.92■□□□□ 0.78
CCDC88B-209ENST00000494080 EVA1CP58658 441 aa19.92■□□□□ 0.78
CCDC88B-209ENST00000494080 ATF7IPQ6VMQ6 1270 aa19.92■□□□□ 0.78
CCDC88B-209ENST00000494080 NUP160Q12769 1436 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms