RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TONSLQ96HA7 1378 aa21.25■□□□□ 0.99
USP4-212ENST00000486549 DLC1Q96QB1 1528 aa21.24■□□□□ 0.99
USP4-212ENST00000486549 MST1RQ04912 1400 aa21.24■□□□□ 0.99
USP4-212ENST00000486549 TRAK1Q9UPV9 953 aa21.24■□□□□ 0.99
USP4-212ENST00000486549 SAFB2Q14151 953 aaKnown RBP eCLIP21.23■□□□□ 0.99
USP4-212ENST00000486549 PRAM1Q96QH2 718 aa21.23■□□□□ 0.99
USP4-212ENST00000486549 CDC42BPGQ6DT37 1551 aa21.23■□□□□ 0.99
USP4-212ENST00000486549 POGKQ9P215 609 aa21.22■□□□□ 0.99
USP4-212ENST00000486549 ARHGEF28Q8N1W1 1705 aaKnown RBP21.21■□□□□ 0.99
USP4-212ENST00000486549 PHLPP1O60346 1717 aa21.21■□□□□ 0.99
USP4-212ENST00000486549 TRPM1Q7Z4N2 1603 aa21.2■□□□□ 0.98
USP4-212ENST00000486549 NBPF1Q3BBV0 1214 aa21.2■□□□□ 0.98
USP4-212ENST00000486549 SIRT1Q96EB6 747 aa21.2■□□□□ 0.98
USP4-212ENST00000486549 JCADQ9P266 1359 aa21.2■□□□□ 0.98
USP4-212ENST00000486549 C1orf167Q5SNV9 1468 aa21.18■□□□□ 0.98
USP4-212ENST00000486549 BRINP3Q76B58 766 aa21.17■□□□□ 0.98
USP4-212ENST00000486549 FMN2Q9NZ56 1722 aa21.17■□□□□ 0.98
USP4-212ENST00000486549 NUTM2FA1L443 756 aa21.16■□□□□ 0.98
USP4-212ENST00000486549 AHDC1Q5TGY3 1603 aaPredicted RBP21.15■□□□□ 0.98
USP4-212ENST00000486549 SPATA31A6Q5VVP1 1343 aa21.13■□□□□ 0.97
USP4-212ENST00000486549 MINK1Q8N4C8 1332 aaPredicted RBP21.13■□□□□ 0.97
USP4-212ENST00000486549 NBPF8Q3BBV2 869 aa21.13■□□□□ 0.97
USP4-212ENST00000486549 CCER1Q8TC90 406 aaPredicted RBP21.13■□□□□ 0.97
USP4-212ENST00000486549 HIRIP3Q9BW71 556 aaPredicted RBP21.13■□□□□ 0.97
USP4-212ENST00000486549 COL16A1Q07092 1604 aaPredicted RBP21.13■□□□□ 0.97
USP4-212ENST00000486549 NHSL1Q5SYE7 1610 aa21.13■□□□□ 0.97
USP4-212ENST00000486549 ADGRB2O60241 1585 aa21.13■□□□□ 0.97
USP4-212ENST00000486549 ROCK2O75116 1388 aaKnown RBP21.12■□□□□ 0.97
USP4-212ENST00000486549 ORAI2Q96SN7 254 aa21.12■□□□□ 0.97
USP4-212ENST00000486549 RGPD8O14715 1765 aaPredicted RBP21.1■□□□□ 0.97
USP4-212ENST00000486549 CLSPNQ9HAW4 1339 aa21.1■□□□□ 0.97
USP4-212ENST00000486549 ESCO1Q5FWF5 840 aa21.09■□□□□ 0.97
USP4-212ENST00000486549 DDX17Q92841 729 aaKnown RBP21.09■□□□□ 0.97
USP4-212ENST00000486549 LRRC59Q96AG4 307 aaKnown RBP21.07■□□□□ 0.96
USP4-212ENST00000486549 QRICH2Q9H0J4 1663 aa21.07■□□□□ 0.96
USP4-212ENST00000486549 RALGAPBQ86X10 1494 aa21.06■□□□□ 0.96
USP4-212ENST00000486549 USP32Q8NFA0 1604 aa21.05■□□□□ 0.96
USP4-212ENST00000486549 CENPJQ9HC77 1338 aaPredicted RBP21.04■□□□□ 0.96
USP4-212ENST00000486549 MEX3CQ5U5Q3 659 aaKnown RBP21.04■□□□□ 0.96
USP4-212ENST00000486549 KIF1AQ12756 1690 aa21.04■□□□□ 0.96
USP4-212ENST00000486549 WASLO00401 505 aaPredicted RBP21.03■□□□□ 0.96
USP4-212ENST00000486549 RGS17Q9UGC6 210 aaPredicted RBP21.03■□□□□ 0.96
USP4-212ENST00000486549 GPRASP1Q5JY77 1395 aa21.02■□□□□ 0.96
USP4-212ENST00000486549 TULP4Q9NRJ4 1543 aa21.02■□□□□ 0.96
USP4-212ENST00000486549 EIF3AQ14152 1382 aaKnown RBP21.01■□□□□ 0.95
USP4-212ENST00000486549 CARD11Q9BXL7 1154 aa21.01■□□□□ 0.95
USP4-212ENST00000486549 SHPRHQ149N8 1683 aa21.01■□□□□ 0.95
USP4-212ENST00000486549 ANKARQ7Z5J8 1434 aa21.01■□□□□ 0.95
USP4-212ENST00000486549 FOXO3O43524 673 aa20.99■□□□□ 0.95
USP4-212ENST00000486549 XPCQ01831 940 aaPredicted RBP20.99■□□□□ 0.95
USP4-212ENST00000486549 ZNF772Q68DY9 489 aaPredicted RBP20.99■□□□□ 0.95
USP4-212ENST00000486549 NPHP3Q7Z494 1330 aa20.99■□□□□ 0.95
USP4-212ENST00000486549 PHF8Q9UPP1 1060 aa20.98■□□□□ 0.95
USP4-212ENST00000486549 PRR36Q9H6K5 1346 aa20.98■□□□□ 0.95
USP4-212ENST00000486549 ITSN1Q15811 1721 aa20.98■□□□□ 0.95
USP4-212ENST00000486549 CDK19Q9BWU1 502 aa20.97■□□□□ 0.95
USP4-212ENST00000486549 SOS2Q07890 1332 aaPredicted RBP20.97■□□□□ 0.95
USP4-212ENST00000486549 ATP7BP35670 1465 aa20.96■□□□□ 0.95
USP4-212ENST00000486549 PXDNQ92626 1479 aa20.96■□□□□ 0.95
USP4-212ENST00000486549 PMFBP1Q8TBY8 1022 aa20.96■□□□□ 0.95
USP4-212ENST00000486549 TIMELESSQ9UNS1 1208 aa20.96■□□□□ 0.95
USP4-212ENST00000486549 TOPAZ1Q8N9V7 1692 aa20.93■□□□□ 0.94
USP4-212ENST00000486549 NUTM2BA6NNL0 878 aaPredicted RBP20.93■□□□□ 0.94
USP4-212ENST00000486549 NUTM2EB1AL46 878 aaPredicted RBP20.93■□□□□ 0.94
USP4-212ENST00000486549 SRPK2P78362 688 aaKnown RBP20.93■□□□□ 0.94
USP4-212ENST00000486549 POTEAQ6S8J7 498 aa20.93■□□□□ 0.94
USP4-212ENST00000486549 NUTM2AQ8IVF1 878 aaPredicted RBP20.93■□□□□ 0.94
USP4-212ENST00000486549 NUDT16Q96DE0 195 aaKnown RBP20.93■□□□□ 0.94
USP4-212ENST00000486549 PNPLA6Q8IY17 1366 aa20.93■□□□□ 0.94
USP4-212ENST00000486549 LRP6O75581 1613 aa20.92■□□□□ 0.94
USP4-212ENST00000486549 CABP2Q9NPB3 220 aa20.91■□□□□ 0.94
USP4-212ENST00000486549 KRT28Q7Z3Y7 464 aa20.9■□□□□ 0.94
USP4-212ENST00000486549 EVC2Q86UK5 1308 aa20.88■□□□□ 0.93
USP4-212ENST00000486549 PSME1Q06323 249 aa20.88■□□□□ 0.93
USP4-212ENST00000486549 NGDNQ8NEJ9 315 aaKnown RBP20.88■□□□□ 0.93
USP4-212ENST00000486549 COL22A1Q8NFW1 1626 aaPredicted RBP20.86■□□□□ 0.93
USP4-212ENST00000486549 TRPM3Q9HCF6 1732 aaPredicted RBP20.85■□□□□ 0.93
USP4-212ENST00000486549 CCDC61Q9Y6R9 512 aa20.85■□□□□ 0.93
USP4-212ENST00000486549 TNS3Q68CZ2 1445 aa20.85■□□□□ 0.93
USP4-212ENST00000486549 PPIP5K1Q6PFW1 1433 aa20.85■□□□□ 0.93
USP4-212ENST00000486549 SBNO2Q9Y2G9 1366 aa20.85■□□□□ 0.93
USP4-212ENST00000486549 SPATA31A3Q5VYP0 1347 aa20.84■□□□□ 0.93
USP4-212ENST00000486549 LMOD2Q6P5Q4 547 aa20.84■□□□□ 0.93
USP4-212ENST00000486549 USP47Q96K76 1375 aa20.84■□□□□ 0.93
USP4-212ENST00000486549 RXRBP28702 533 aa20.83■□□□□ 0.93
USP4-212ENST00000486549 C8orf37Q96NL8 207 aa20.83■□□□□ 0.93
USP4-212ENST00000486549 AFF2P51816 1311 aa20.82■□□□□ 0.92
USP4-212ENST00000486549 ST20-MTHFSA0A0A6YYL1 179 aa20.82■□□□□ 0.92
USP4-212ENST00000486549 PLEKHG5O94827 1062 aa20.82■□□□□ 0.92
USP4-212ENST00000486549 SBNO1A3KN83 1393 aa20.82■□□□□ 0.92
USP4-212ENST00000486549 ACEP12821 1306 aa20.81■□□□□ 0.92
USP4-212ENST00000486549 NGLY1Q96IV0 654 aa20.81■□□□□ 0.92
USP4-212ENST00000486549 ALS2Q96Q42 1657 aa20.8■□□□□ 0.92
USP4-212ENST00000486549 PLEKHG3A1L390 1219 aa20.79■□□□□ 0.92
USP4-212ENST00000486549 PAK3O75914 559 aaPredicted RBP20.79■□□□□ 0.92
USP4-212ENST00000486549 ADAMTS2O95450 1211 aa20.79■□□□□ 0.92
USP4-212ENST00000486549 CABP1Q9NZU7 370 aa20.79■□□□□ 0.92
USP4-212ENST00000486549 POLR3AO14802 1390 aaPredicted RBP20.79■□□□□ 0.92
USP4-212ENST00000486549 ARHGEF10O15013 1369 aa20.77■□□□□ 0.92
USP4-212ENST00000486549 ATAD2Q6PL18 1390 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 180.4 ms