RNA–Protein interactions for RNA: ENST00000484252.5

LIMS2-215, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,099 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-215ENST00000484252 SKAP1Q86WV1 359 aa25.56■■□□□ 1.68
LIMS2-215ENST00000484252 FAM161AQ3B820 660 aa25.55■■□□□ 1.68
LIMS2-215ENST00000484252 WWC1Q8IX03 1113 aa25.55■■□□□ 1.68
LIMS2-215ENST00000484252 PIK3C2BO00750 1634 aa25.54■■□□□ 1.68
LIMS2-215ENST00000484252 CGNL1Q0VF96 1302 aa25.54■■□□□ 1.68
LIMS2-215ENST00000484252 RUNDC1Q96C34 613 aa25.54■■□□□ 1.68
LIMS2-215ENST00000484252 SLC12A5Q9H2X9 1139 aa25.54■■□□□ 1.68
LIMS2-215ENST00000484252 USP35Q9P2H5 1018 aa25.54■■□□□ 1.68
LIMS2-215ENST00000484252 NEO1Q92859 1461 aa25.53■■□□□ 1.68
LIMS2-215ENST00000484252 BCAR3O75815 825 aa25.53■■□□□ 1.68
LIMS2-215ENST00000484252 GLI2P10070 1586 aa25.53■■□□□ 1.68
LIMS2-215ENST00000484252 PPM1GO15355 546 aaPredicted RBP25.52■■□□□ 1.68
LIMS2-215ENST00000484252 NSD2O96028 1365 aa25.52■■□□□ 1.68
LIMS2-215ENST00000484252 IQSEC2Q5JU85 1478 aa25.52■■□□□ 1.68
LIMS2-215ENST00000484252 VGFO15240 615 aaPredicted RBP25.51■■□□□ 1.67
LIMS2-215ENST00000484252 DMRT2Q9Y5R5 561 aa25.51■■□□□ 1.67
LIMS2-215ENST00000484252 EVC2Q86UK5 1308 aa25.5■■□□□ 1.67
LIMS2-215ENST00000484252 NCBP3Q53F19 620 aaKnown RBP25.5■■□□□ 1.67
LIMS2-215ENST00000484252 TMEM132EQ6IEE7 984 aa25.49■■□□□ 1.67
LIMS2-215ENST00000484252 CFAP53Q96M91 514 aa25.49■■□□□ 1.67
LIMS2-215ENST00000484252 NEXMIFQ5QGS0 1516 aa25.49■■□□□ 1.67
LIMS2-215ENST00000484252 ARHGAP31Q2M1Z3 1444 aa25.48■■□□□ 1.67
LIMS2-215ENST00000484252 ARHGEF28Q8N1W1 1705 aaKnown RBP25.48■■□□□ 1.67
LIMS2-215ENST00000484252 CFAP65Q6ZU64 1925 aaKnown RBP25.48■■□□□ 1.67
LIMS2-215ENST00000484252 C8orf34Q49A92 452 aa25.48■■□□□ 1.67
LIMS2-215ENST00000484252 WDR63Q8IWG1 891 aa25.48■■□□□ 1.67
LIMS2-215ENST00000484252 PHF23Q9BUL5 403 aaPredicted RBP25.48■■□□□ 1.67
LIMS2-215ENST00000484252 ANKRD36BQ8N2N9 1353 aa25.47■■□□□ 1.67
LIMS2-215ENST00000484252 SIGLEC1Q9BZZ2 1709 aa25.47■■□□□ 1.67
LIMS2-215ENST00000484252 AAMPQ13685 434 aa25.46■■□□□ 1.67
LIMS2-215ENST00000484252 CCDC27Q2M243 656 aa25.46■■□□□ 1.67
LIMS2-215ENST00000484252 TULP4Q9NRJ4 1543 aa25.45■■□□□ 1.66
LIMS2-215ENST00000484252 ZFYVE9O95405 1425 aa25.44■■□□□ 1.66
LIMS2-215ENST00000484252 DIP2CQ9Y2E4 1556 aa25.44■■□□□ 1.66
LIMS2-215ENST00000484252 CANXP27824 592 aaKnown RBP25.43■■□□□ 1.66
LIMS2-215ENST00000484252 TCP11L2Q8N4U5 519 aa25.43■■□□□ 1.66
LIMS2-215ENST00000484252 MTHFSP49914 203 aa25.43■■□□□ 1.66
LIMS2-215ENST00000484252 TNNT2P45379 298 aaPredicted RBP25.42■■□□□ 1.66
LIMS2-215ENST00000484252 LAS1LQ9Y4W2 734 aaKnown RBP25.41■■□□□ 1.66
LIMS2-215ENST00000484252 CLUAP1Q96AJ1 413 aa25.41■■□□□ 1.66
LIMS2-215ENST00000484252 NEFMP07197 916 aa25.4■■□□□ 1.66
LIMS2-215ENST00000484252 RGS3P49796 1198 aa25.39■■□□□ 1.65
LIMS2-215ENST00000484252 RAPGEF3O95398 923 aa25.38■■□□□ 1.65
LIMS2-215ENST00000484252 RARSP54136 660 aaKnown RBP25.38■■□□□ 1.65
LIMS2-215ENST00000484252 SLC52A1Q9NWF4 448 aa25.38■■□□□ 1.65
LIMS2-215ENST00000484252 DAXXQ9UER7 740 aaPredicted RBP25.38■■□□□ 1.65
LIMS2-215ENST00000484252 MAPK8IP3Q9UPT6 1336 aa25.37■■□□□ 1.65
LIMS2-215ENST00000484252 IGHDP01880 384 aa25.36■■□□□ 1.65
LIMS2-215ENST00000484252 NEUROD2Q15784 382 aa25.35■■□□□ 1.65
LIMS2-215ENST00000484252 RRP7AQ9Y3A4 280 aaKnown RBP25.35■■□□□ 1.65
LIMS2-215ENST00000484252 RICTORQ6R327 1708 aa25.35■■□□□ 1.65
LIMS2-215ENST00000484252 PANK1Q8TE04 598 aa25.35■■□□□ 1.65
LIMS2-215ENST00000484252 MYH16Q9H6N6 1097 aa25.35■■□□□ 1.65
LIMS2-215ENST00000484252 COG6Q9Y2V7 657 aa25.35■■□□□ 1.65
LIMS2-215ENST00000484252 ADGRB2O60241 1585 aa25.34■■□□□ 1.65
LIMS2-215ENST00000484252 ABCC11Q96J66 1382 aa25.33■■□□□ 1.65
LIMS2-215ENST00000484252 VIRMAQ69YN4 1812 aaKnown RBP25.33■■□□□ 1.65
LIMS2-215ENST00000484252 PMFBP1Q8TBY8 1022 aa25.33■■□□□ 1.65
LIMS2-215ENST00000484252 IDI1Q13907 227 aa25.32■■□□□ 1.64
LIMS2-215ENST00000484252 FRAT1Q92837 279 aaPredicted RBP25.31■■□□□ 1.64
LIMS2-215ENST00000484252 CABP2Q9NPB3 220 aa25.31■■□□□ 1.64
LIMS2-215ENST00000484252 NUTM2DQ5VT03 806 aaPredicted RBP25.3■■□□□ 1.64
LIMS2-215ENST00000484252 ZMYM3Q14202 1370 aa25.29■■□□□ 1.64
LIMS2-215ENST00000484252 ATAD2Q6PL18 1390 aa25.29■■□□□ 1.64
LIMS2-215ENST00000484252 CT47B1P0C2W7 299 aaPredicted RBP25.29■■□□□ 1.64
LIMS2-215ENST00000484252 U2AF1L5P0DN76 240 aaPredicted RBP25.29■■□□□ 1.64
LIMS2-215ENST00000484252 U2AF1Q01081 240 aaKnown RBP eCLIP25.29■■□□□ 1.64
LIMS2-215ENST00000484252 MED14O60244 1454 aa25.28■■□□□ 1.64
LIMS2-215ENST00000484252 A0A1W2PP64 1363 aa25.28■■□□□ 1.64
LIMS2-215ENST00000484252 TMEM131LA2VDJ0 1609 aa25.27■■□□□ 1.64
LIMS2-215ENST00000484252 PREX1Q8TCU6 1659 aa25.27■■□□□ 1.64
LIMS2-215ENST00000484252 CLTCQ00610 1675 aaKnown RBP25.26■■□□□ 1.63
LIMS2-215ENST00000484252 PTPRMP28827 1452 aa25.26■■□□□ 1.63
LIMS2-215ENST00000484252 ANKRD26Q9UPS8 1709 aa25.25■■□□□ 1.63
LIMS2-215ENST00000484252 SRPK2P78362 688 aaKnown RBP25.24■■□□□ 1.63
LIMS2-215ENST00000484252 TERF2IPQ9NYB0 399 aa25.24■■□□□ 1.63
LIMS2-215ENST00000484252 COL3A1P02461 1466 aaPredicted RBP25.23■■□□□ 1.63
LIMS2-215ENST00000484252 YEATS2Q9ULM3 1422 aa25.22■■□□□ 1.63
LIMS2-215ENST00000484252 RLBP1P12271 317 aa25.21■■□□□ 1.63
LIMS2-215ENST00000484252 YTHDC2Q9H6S0 1430 aaKnown RBP25.21■■□□□ 1.63
LIMS2-215ENST00000484252 MYO5BQ9ULV0 1848 aa25.21■■□□□ 1.63
LIMS2-215ENST00000484252 SLC4A3P48751 1232 aa25.21■■□□□ 1.63
LIMS2-215ENST00000484252 SAFB2Q14151 953 aaKnown RBP eCLIP25.21■■□□□ 1.63
LIMS2-215ENST00000484252 STK26Q9P289 416 aa25.21■■□□□ 1.63
LIMS2-215ENST00000484252 PLEKHF1Q96S99 279 aa25.2■■□□□ 1.62
LIMS2-215ENST00000484252 RWDD1Q9H446 243 aaPredicted RBP25.2■■□□□ 1.62
LIMS2-215ENST00000484252 NFKBIBQ15653 356 aa25.19■■□□□ 1.62
LIMS2-215ENST00000484252 ZKSCAN2Q63HK3 967 aa25.19■■□□□ 1.62
LIMS2-215ENST00000484252 PCDHB15Q9Y5E8 787 aa25.19■■□□□ 1.62
LIMS2-215ENST00000484252 IL16Q14005 1332 aa25.18■■□□□ 1.62
LIMS2-215ENST00000484252 MVPQ14764 893 aaKnown RBP25.17■■□□□ 1.62
LIMS2-215ENST00000484252 CD163L1Q9NR16 1453 aa25.17■■□□□ 1.62
LIMS2-215ENST00000484252 USP19O94966 1318 aa25.17■■□□□ 1.62
LIMS2-215ENST00000484252 BCL2L13Q9BXK5 485 aa25.17■■□□□ 1.62
LIMS2-215ENST00000484252 PNNQ9H307 717 aaKnown RBP25.17■■□□□ 1.62
LIMS2-215ENST00000484252 POGKQ9P215 609 aa25.17■■□□□ 1.62
LIMS2-215ENST00000484252 NLRP1Q9C000 1473 aa25.17■■□□□ 1.62
LIMS2-215ENST00000484252 TMPOP42166 694 aaKnown RBP25.16■■□□□ 1.62
LIMS2-215ENST00000484252 PRAM1Q96QH2 718 aa25.16■■□□□ 1.62
LIMS2-215ENST00000484252 GGNBP2Q9H3C7 697 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms