RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 SAFB2Q14151 953 aaKnown RBP eCLIP17.67■□□□□ 0.42
PTPRF-213ENST00000481019 BRINP3Q76B58 766 aa17.67■□□□□ 0.42
PTPRF-213ENST00000481019 SIRT1Q96EB6 747 aa17.67■□□□□ 0.42
PTPRF-213ENST00000481019 CDC42BPGQ6DT37 1551 aa17.66■□□□□ 0.42
PTPRF-213ENST00000481019 NBPF8Q3BBV2 869 aa17.66■□□□□ 0.42
PTPRF-213ENST00000481019 C1orf167Q5SNV9 1468 aa17.66■□□□□ 0.42
PTPRF-213ENST00000481019 ARHGEF28Q8N1W1 1705 aaKnown RBP17.65■□□□□ 0.42
PTPRF-213ENST00000481019 PHLPP1O60346 1717 aa17.64■□□□□ 0.41
PTPRF-213ENST00000481019 DDX17Q92841 729 aaKnown RBP17.64■□□□□ 0.41
PTPRF-213ENST00000481019 TRPM1Q7Z4N2 1603 aa17.64■□□□□ 0.41
PTPRF-213ENST00000481019 ORAI2Q96SN7 254 aa17.63■□□□□ 0.41
PTPRF-213ENST00000481019 COL16A1Q07092 1604 aaPredicted RBP17.62■□□□□ 0.41
PTPRF-213ENST00000481019 AHDC1Q5TGY3 1603 aaPredicted RBP17.62■□□□□ 0.41
PTPRF-213ENST00000481019 FMN2Q9NZ56 1722 aa17.62■□□□□ 0.41
PTPRF-213ENST00000481019 NUTM2FA1L443 756 aa17.62■□□□□ 0.41
PTPRF-213ENST00000481019 POGKQ9P215 609 aa17.61■□□□□ 0.41
PTPRF-213ENST00000481019 HIRIP3Q9BW71 556 aaPredicted RBP17.6■□□□□ 0.41
PTPRF-213ENST00000481019 NHSL1Q5SYE7 1610 aa17.6■□□□□ 0.41
PTPRF-213ENST00000481019 TONSLQ96HA7 1378 aa17.59■□□□□ 0.41
PTPRF-213ENST00000481019 MINK1Q8N4C8 1332 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-213ENST00000481019 RGPD8O14715 1765 aaPredicted RBP17.58■□□□□ 0.41
PTPRF-213ENST00000481019 ADGRB2O60241 1585 aa17.58■□□□□ 0.41
PTPRF-213ENST00000481019 USP32Q8NFA0 1604 aa17.58■□□□□ 0.4
PTPRF-213ENST00000481019 MED1Q15648 1581 aaPredicted RBP17.56■□□□□ 0.4
PTPRF-213ENST00000481019 ESCO1Q5FWF5 840 aa17.55■□□□□ 0.4
PTPRF-213ENST00000481019 ROCK2O75116 1388 aaKnown RBP17.53■□□□□ 0.4
PTPRF-213ENST00000481019 PRR36Q9H6K5 1346 aa17.53■□□□□ 0.4
PTPRF-213ENST00000481019 GPRASP1Q5JY77 1395 aa17.52■□□□□ 0.39
PTPRF-213ENST00000481019 RALGAPBQ86X10 1494 aa17.51■□□□□ 0.39
PTPRF-213ENST00000481019 WASLO00401 505 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-213ENST00000481019 XPCQ01831 940 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-213ENST00000481019 PXDNQ92626 1479 aa17.5■□□□□ 0.39
PTPRF-213ENST00000481019 CCER1Q8TC90 406 aaPredicted RBP17.5■□□□□ 0.39
PTPRF-213ENST00000481019 QRICH2Q9H0J4 1663 aa17.5■□□□□ 0.39
PTPRF-213ENST00000481019 JCADQ9P266 1359 aa17.5■□□□□ 0.39
PTPRF-213ENST00000481019 SHPRHQ149N8 1683 aa17.49■□□□□ 0.39
PTPRF-213ENST00000481019 TULP4Q9NRJ4 1543 aa17.49■□□□□ 0.39
PTPRF-213ENST00000481019 FOXO3O43524 673 aa17.49■□□□□ 0.39
PTPRF-213ENST00000481019 DISP3Q9P2K9 1392 aa17.49■□□□□ 0.39
PTPRF-213ENST00000481019 SOS2Q07890 1332 aaPredicted RBP17.48■□□□□ 0.39
PTPRF-213ENST00000481019 CLSPNQ9HAW4 1339 aa17.48■□□□□ 0.39
PTPRF-213ENST00000481019 CENPJQ9HC77 1338 aaPredicted RBP17.48■□□□□ 0.39
PTPRF-213ENST00000481019 LRP6O75581 1613 aa17.48■□□□□ 0.39
PTPRF-213ENST00000481019 ANKARQ7Z5J8 1434 aa17.47■□□□□ 0.39
PTPRF-213ENST00000481019 CDK19Q9BWU1 502 aa17.47■□□□□ 0.39
PTPRF-213ENST00000481019 KIF1AQ12756 1690 aa17.47■□□□□ 0.39
PTPRF-213ENST00000481019 ATP7BP35670 1465 aa17.46■□□□□ 0.39
PTPRF-213ENST00000481019 PMFBP1Q8TBY8 1022 aa17.46■□□□□ 0.39
PTPRF-213ENST00000481019 PHF8Q9UPP1 1060 aa17.46■□□□□ 0.39
PTPRF-213ENST00000481019 PNPLA6Q8IY17 1366 aa17.45■□□□□ 0.38
PTPRF-213ENST00000481019 CARD11Q9BXL7 1154 aa17.45■□□□□ 0.38
PTPRF-213ENST00000481019 NUDT16Q96DE0 195 aaKnown RBP17.44■□□□□ 0.38
PTPRF-213ENST00000481019 NPHP3Q7Z494 1330 aa17.44■□□□□ 0.38
PTPRF-213ENST00000481019 TOPAZ1Q8N9V7 1692 aa17.43■□□□□ 0.38
PTPRF-213ENST00000481019 LRRC59Q96AG4 307 aaKnown RBP17.43■□□□□ 0.38
PTPRF-213ENST00000481019 CABP2Q9NPB3 220 aa17.42■□□□□ 0.38
PTPRF-213ENST00000481019 RGS17Q9UGC6 210 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-213ENST00000481019 ZEB1P37275 1124 aaPredicted RBP17.41■□□□□ 0.38
PTPRF-213ENST00000481019 KRT28Q7Z3Y7 464 aa17.41■□□□□ 0.38
PTPRF-213ENST00000481019 NUTM2BA6NNL0 878 aaPredicted RBP17.4■□□□□ 0.38
PTPRF-213ENST00000481019 NUTM2EB1AL46 878 aaPredicted RBP17.4■□□□□ 0.38
PTPRF-213ENST00000481019 ILDR2Q71H61 639 aa17.4■□□□□ 0.38
PTPRF-213ENST00000481019 NUTM2AQ8IVF1 878 aaPredicted RBP17.4■□□□□ 0.38
PTPRF-213ENST00000481019 SPATA31A6Q5VVP1 1343 aa17.4■□□□□ 0.38
PTPRF-213ENST00000481019 EIF3AQ14152 1382 aaKnown RBP17.4■□□□□ 0.38
PTPRF-213ENST00000481019 TRPM3Q9HCF6 1732 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-213ENST00000481019 COL22A1Q8NFW1 1626 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-213ENST00000481019 ITSN1Q15811 1721 aa17.38■□□□□ 0.37
PTPRF-213ENST00000481019 TIMELESSQ9UNS1 1208 aa17.38■□□□□ 0.37
PTPRF-213ENST00000481019 SRPK2P78362 688 aaKnown RBP17.37■□□□□ 0.37
PTPRF-213ENST00000481019 SPATA31A3Q5VYP0 1347 aa17.37■□□□□ 0.37
PTPRF-213ENST00000481019 PSME1Q06323 249 aa17.36■□□□□ 0.37
PTPRF-213ENST00000481019 ST20-MTHFSA0A0A6YYL1 179 aa17.34■□□□□ 0.37
PTPRF-213ENST00000481019 PLEKHG3A1L390 1219 aa17.34■□□□□ 0.37
PTPRF-213ENST00000481019 SBNO1A3KN83 1393 aa17.34■□□□□ 0.37
PTPRF-213ENST00000481019 ACEP12821 1306 aa17.34■□□□□ 0.37
PTPRF-213ENST00000481019 TNS3Q68CZ2 1445 aa17.34■□□□□ 0.37
PTPRF-213ENST00000481019 PPIP5K1Q6PFW1 1433 aa17.34■□□□□ 0.37
PTPRF-213ENST00000481019 EVC2Q86UK5 1308 aa17.34■□□□□ 0.37
PTPRF-213ENST00000481019 NGDNQ8NEJ9 315 aaKnown RBP17.34■□□□□ 0.37
PTPRF-213ENST00000481019 PHF23Q9BUL5 403 aaPredicted RBP17.34■□□□□ 0.37
PTPRF-213ENST00000481019 CCDC61Q9Y6R9 512 aa17.34■□□□□ 0.37
PTPRF-213ENST00000481019 ALS2Q96Q42 1657 aa17.33■□□□□ 0.37
PTPRF-213ENST00000481019 POLR3AO14802 1390 aaPredicted RBP17.33■□□□□ 0.36
PTPRF-213ENST00000481019 TESK2Q96S53 571 aa17.33■□□□□ 0.36
PTPRF-213ENST00000481019 SBNO2Q9Y2G9 1366 aa17.32■□□□□ 0.36
PTPRF-213ENST00000481019 PLEKHG5O94827 1062 aa17.32■□□□□ 0.36
PTPRF-213ENST00000481019 ADAMTS2O95450 1211 aa17.32■□□□□ 0.36
PTPRF-213ENST00000481019 POTEAQ6S8J7 498 aa17.32■□□□□ 0.36
PTPRF-213ENST00000481019 CABLES1Q8TDN4 633 aa17.32■□□□□ 0.36
PTPRF-213ENST00000481019 CABP1Q9NZU7 370 aa17.32■□□□□ 0.36
PTPRF-213ENST00000481019 USP47Q96K76 1375 aa17.31■□□□□ 0.36
PTPRF-213ENST00000481019 MEX3CQ5U5Q3 659 aaKnown RBP17.31■□□□□ 0.36
PTPRF-213ENST00000481019 ABCA3Q99758 1704 aa17.3■□□□□ 0.36
PTPRF-213ENST00000481019 LMOD2Q6P5Q4 547 aa17.3■□□□□ 0.36
PTPRF-213ENST00000481019 C8orf37Q96NL8 207 aa17.28■□□□□ 0.36
PTPRF-213ENST00000481019 CRYBG1Q9Y4K1 1723 aa17.27■□□□□ 0.36
PTPRF-213ENST00000481019 PAK3O75914 559 aaPredicted RBP17.27■□□□□ 0.36
PTPRF-213ENST00000481019 MARF1Q9Y4F3 1742 aaKnown RBP17.27■□□□□ 0.35
PTPRF-213ENST00000481019 AFF2P51816 1311 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms